Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.1e-211 737.3 381 100.0
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.3e-112 410.6 413 61.7
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.2e-104 383.3 413 58.6
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 1.6e-89 334.0 413 53.0
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 1.7e-80 303.9 413 47.7
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.8e-80 302.8 325 59.1
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 7.3e-71 271.9 413 44.1
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.7e-65 253.4 383 42.0
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 8.6e-64 248.4 383 41.3
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 7.3e-63 245.4 413 41.2
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 2.1e-62 243.8 413 40.0
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 1.4e-61 241.1 413 40.2
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 1.8e-61 240.7 413 40.0
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 5.8e-60 235.7 413 39.7
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 5.8e-60 235.7 413 39.7
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 1.7e-59 234.2 413 39.2
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 4.9e-59 232.6 413 39.7
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.9e-58 230.7 413 39.0
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 5.4e-58 229.2 414 39.9
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 7.1e-58 228.8 413 38.7
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 1.3e-56 224.6 410 38.3
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.7e-56 224.2 413 38.5
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 6.6e-56 222.2 413 41.2
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.9e-55 220.7 413 39.2
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 9.5e-55 218.4 413 35.8
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 9.5e-55 218.4 413 38.0
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 1.2e-54 218.0 413 37.8
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 2.1e-54 217.2 413 36.6
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 2.1e-54 217.2 413 36.8
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 2.1e-54 217.2 413 36.8
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 6.2e-54 215.7 413 36.6
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 8.1e-54 215.3 413 37.3
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 2.3e-53 213.8 413 38.3
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 4.0e-53 213.0 422 37.0
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 2.6e-52 210.3 413 37.3
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 3.4e-52 209.9 312 41.0
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 4.4e-52 209.5 410 37.3
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 5.8e-52 209.1 396 36.6
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.7e-51 207.6 413 37.0
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.9e-51 206.8 413 37.3
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 1.9e-50 204.1 413 36.1
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 1.9e-50 204.1 349 38.1
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 3.2e-50 203.4 345 40.6
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 1.6e-49 201.1 413 35.8
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 2.7e-49 200.3 449 34.3
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 3.5e-49 199.9 413 36.6
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.7e-48 197.6 372 38.4
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 2.3e-48 197.2 413 35.1
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 3.9e-48 196.4 413 36.1
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 5.1e-48 196.1 383 36.0
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 5.1e-48 196.1 411 36.0
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 6.6e-48 195.7 413 33.4
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 1.9e-47 194.1 412 36.7
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 2.5e-47 193.7 406 35.5
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 2.5e-47 193.7 419 34.6
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 3.3e-47 193.4 413 36.6
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 7.3e-47 192.2 413 36.8
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 1.6e-46 191.0 413 33.2
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.1e-46 190.7 413 34.9
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 3.6e-46 189.9 413 33.2
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.1e-45 188.3 413 33.9
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 2.4e-45 187.2 410 33.9
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 4.0e-45 186.4 413 32.7
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 5.2e-45 186.0 312 37.2
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 2.0e-44 184.1 416 35.8
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 2.0e-44 184.1 413 33.9
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 5.8e-44 182.6 413 33.2
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 5.8e-44 182.6 410 33.4
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 9.9e-44 181.8 413 32.9
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.3e-43 181.4 291 39.9
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 2.9e-43 180.3 413 32.4
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 6.4e-43 179.1 449 31.6
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.1e-42 178.3 410 32.7
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 2.4e-42 177.2 410 33.7
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.2e-42 176.4 413 33.2
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 1.6e-41 174.5 413 31.7
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 3.5e-41 173.3 413 32.7
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.5e-41 173.3 423 33.3
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 4.6e-41 172.9 413 32.2
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 6.0e-41 172.6 410 32.0
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 7.8e-41 172.2 422 31.8
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.0e-40 171.8 415 34.2
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 1.7e-40 171.0 410 34.6
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 2.3e-40 170.6 410 33.2
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 2.3e-40 170.6 409 31.5
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 2.3e-40 170.6 409 31.5
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 3.9e-40 169.9 415 33.3
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.9e-40 169.9 435 32.0
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 6.6e-40 169.1 409 31.1
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 6.6e-40 169.1 409 31.1
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.3e-39 166.4 435 31.5
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.1e-38 164.1 413 32.4
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.1e-38 164.1 413 32.2
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 4.8e-38 162.9 414 33.8
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 6.2e-38 162.5 413 31.7
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 6.2e-38 162.5 413 32.4
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 9.0e-37 158.7 413 31.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.0e-36 157.5 413 32.9
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 2.6e-36 157.1 415 32.5
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 7.6e-36 155.6 410 32.0
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.7e-35 154.5 418 30.1
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 6.4e-35 152.5 414 31.4
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 1.1e-34 151.8 401 30.7
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.2e-34 150.2 414 31.4
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 5.4e-34 149.4 301 37.2
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 9.3e-34 148.7 410 30.5
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 1.2e-33 148.3 418 31.6
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 2.7e-33 147.1 278 35.3
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 2.7e-33 147.1 358 31.8
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 3.5e-33 146.7 414 32.1
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.0e-32 145.2 414 32.1
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 3.9e-32 143.3 249 39.0
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 4.0e-29 133.3 393 30.5
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 5.8e-28 129.4 344 31.4
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.4e-26 124.8 70 84.3
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 5.4e-26 122.9 388 31.2
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.1e-26 122.5 70 82.9
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 9.3e-26 122.1 301 31.6
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.3e-26 122.1 70 82.9
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 3.5e-25 120.2 382 27.5
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 8.7e-24 115.5 400 28.8
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 7.6e-20 102.4 376 26.6
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 1.0e-19 102.1 217 34.6
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 8.4e-19 99.0 293 29.4
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 7.1e-18 95.9 130 42.3
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 1.3e-14 85.1 410 23.9
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.1e-13 82.0 324 24.7
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 2.9e-11 73.9 221 29.0
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 3.8e-11 73.6 199 31.7
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 3.8e-11 73.6 201 33.3
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 5.0e-11 73.2 182 34.6
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.4e-10 71.6 311 23.8
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 7.2e-10 69.3 56 67.9
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 1.8e-08 64.7 385 23.4
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 6.7e-08 62.8 305 26.9
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 2.8e-06 57.4 45 64.4
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 8.2e-06 55.8 83 34.9


User provided reference genes

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