Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 0.0e+00 1216.4 642 100.0
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.1e-79 302.0 177 87.0
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.7e-68 262.3 148 87.8
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.3e-58 229.9 445 41.1
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.1e-55 222.2 420 41.7
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 2.2e-35 154.8 431 32.9
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 1.9e-31 141.7 427 31.1
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 7.3e-31 139.8 423 32.4
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.1e-30 138.3 419 32.7
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 1.4e-29 135.6 425 29.4
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 2.0e-28 131.7 428 32.7
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 9.8e-28 129.4 447 28.4
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 1.4e-26 125.6 118 50.8
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 2.4e-26 124.8 443 27.1
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 9.2e-26 122.9 118 51.7
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 9.2e-26 122.9 118 52.5
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 1.2e-25 122.5 99 62.6
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 2.0e-25 121.7 408 30.9
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.5e-25 120.9 70 82.9
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.0e-24 119.4 371 29.9
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 1.0e-24 119.4 429 27.5
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 1.3e-24 119.0 99 60.6
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 1.7e-24 118.6 99 60.6
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.3e-24 118.2 374 29.7
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 1.5e-23 115.5 428 28.3
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 2.5e-23 114.8 100 55.0
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 7.3e-23 113.2 443 26.2
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 7.3e-23 113.2 89 61.8
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 9.5e-23 112.8 116 50.0
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 9.5e-23 112.8 454 27.3
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.2e-22 112.5 450 26.9
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 2.8e-22 111.3 100 54.0
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 3.6e-22 110.9 74 64.9
vmacro22823 Vaccinium macrocarpon HOM05D000256 ORTHO05D000119 4.7e-22 110.5 116 52.6
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 1.1e-21 109.4 122 50.8
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.4e-21 109.0 430 28.4
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.8e-21 108.6 207 34.8
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 1.8e-21 108.6 118 45.8
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 2.3e-21 108.2 97 54.6
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 2.3e-21 108.2 199 36.2
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 3.1e-21 107.8 416 27.9
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 4.0e-21 107.5 146 44.5
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 5.2e-21 107.1 374 28.9
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 6.8e-21 106.7 388 27.8
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 6.8e-21 106.7 99 53.5
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 8.9e-21 106.3 138 43.5
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 1.2e-20 105.9 98 53.1
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.2e-20 105.9 99 54.5
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 2.6e-20 104.8 446 30.0
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 4.4e-20 104.0 448 26.1
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 4.4e-20 104.0 415 28.9
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 5.8e-20 103.6 446 30.9
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 7.5e-20 103.2 449 28.3
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 1.7e-19 102.1 522 26.6
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 2.2e-19 101.7 206 32.5
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 2.2e-19 101.7 209 33.0
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.9e-19 101.3 178 37.1
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 3.7e-19 100.9 99 49.5
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.7e-19 100.9 455 29.5
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 3.7e-19 100.9 378 27.0
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 4.9e-19 100.5 451 27.9
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 4.9e-19 100.5 433 26.1
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 8.3e-19 99.8 122 44.3
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 1.1e-18 99.4 374 28.3
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.1e-18 99.4 99 49.5
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.1e-18 99.4 112 43.8
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 3.2e-18 97.8 118 42.4
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 3.2e-18 97.8 568 25.2
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 5.4e-18 97.1 113 46.0
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.4e-18 97.1 113 46.0
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 5.4e-18 97.1 104 51.9
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 7.0e-18 96.7 388 27.6
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 7.0e-18 96.7 116 44.8
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 7.0e-18 96.7 116 44.8
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 7.0e-18 96.7 113 46.0
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.2e-17 95.9 111 44.1
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.6e-17 95.5 99 49.5
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 2.1e-17 95.1 141 41.1
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 2.1e-17 95.1 382 26.2
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.7e-17 94.7 97 49.5
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 2.7e-17 94.7 431 25.5
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 3.5e-17 94.4 391 25.6
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 3.5e-17 94.4 103 45.6
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 4.6e-17 94.0 95 55.8
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 6.0e-17 93.6 117 41.0
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 7.8e-17 93.2 440 27.0
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.3e-16 92.4 458 28.8
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.3e-16 92.4 397 24.9
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.7e-16 92.0 366 25.4
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.7e-16 92.0 76 53.9
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.3e-16 91.7 445 28.1
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.9e-16 90.9 440 29.1
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 5.1e-16 90.5 136 40.4
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 5.1e-16 90.5 98 46.9
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 6.6e-16 90.1 442 24.9
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.6e-16 90.1 429 25.4
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 6.6e-16 90.1 379 26.6
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 8.6e-16 89.7 99 47.5
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 8.6e-16 89.7 126 42.1
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.5e-15 89.0 422 26.3
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 2.5e-15 88.2 449 24.3
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 7.3e-15 86.7 372 25.0
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 7.3e-15 86.7 73 53.4
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 9.5e-15 86.3 438 25.8
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 9.5e-15 86.3 438 25.8
Rhsim05G0027000 Rhododendron simsii HOM05D000007 ORTHO05D000039 9.5e-15 86.3 49 87.8
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 1.2e-14 85.9 438 25.8
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 1.6e-14 85.5 386 25.9
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 2.8e-14 84.7 105 41.0
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 4.7e-14 84.0 100 45.0
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 6.2e-14 83.6 396 24.5
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 6.2e-14 83.6 395 25.6
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 6.2e-14 83.6 85 50.6
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.1e-13 82.8 104 41.3
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.4e-13 82.4 451 24.4
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 1.8e-13 82.0 400 25.2
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 4.0e-13 80.9 477 26.0
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 5.2e-13 80.5 403 26.1
Rhsim05G0027100 Rhododendron simsii HOM05D000007 ORTHO05D000039 1.2e-12 79.3 54 75.9
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 1.5e-12 79.0 425 24.2
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 4.4e-12 77.4 85 43.5
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 5.8e-12 77.0 394 24.6
Sabra03G0128300 Salix brachista HOM05D008849 ORTHO05D010556 1.3e-11 75.9 118 33.9
Cfa014873 Carpinus fangiana HOM05D008849 ORTHO05D010556 8.3e-11 73.2 123 33.3
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 1.1e-10 72.8 82 48.8
Ciclev10007007m.g Citrus clementina HOM05D008849 ORTHO05D010556 1.9e-10 72.0 108 36.1
Potri.001G053200 Populus trichocarpa HOM05D008849 ORTHO05D010556 1.9e-10 72.0 118 33.9
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 4.1e-10 70.9 71 49.3
Eucgr.H00100 Eucalyptus grandis HOM05D008849 ORTHO05D010556 7.1e-10 70.1 112 32.1
Potri.003G175100 Populus trichocarpa HOM05D008849 ORTHO05D010556 1.6e-09 68.9 135 32.6
CiPaw.02G127100 Carya illinoinensis HOM05D008849 ORTHO05D010556 3.5e-09 67.8 115 33.0
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 4.6e-09 67.4 75 42.7
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 1.7e-08 65.5 109 32.1
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 1.9e-07 62.0 171 28.1
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 2.5e-07 61.6 48 54.2
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.3e-07 61.2 61 55.7
Eucgr.E01057 Eucalyptus grandis HOM05D008849 ORTHO05D010556 4.3e-07 60.8 112 28.6
Actinidia35944 Actinidia chinensis HOM05D008849 ORTHO05D010556 7.3e-07 60.1 99 33.3
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.6e-06 58.9 133 30.8
RhsimUnG0146100 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.6e-06 58.9 63 54.0
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 3.6e-06 57.8 61 52.5
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 3.6e-06 57.8 60 51.7
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 4.7e-06 57.4 79 41.8


User provided reference genes

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