Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 0.0e+00 1325.8 675 100.0
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.2e-305 1052.7 599 89.1
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.4e-305 1051.2 651 84.3
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.7e-299 1030.8 599 88.5
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 6.0e-294 1013.8 599 87.3
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 9.3e-287 989.9 599 85.1
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 9.3e-287 989.9 599 85.1
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.1e-284 983.0 606 84.0
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 4.3e-276 954.5 599 81.6
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.1e-274 949.9 598 81.4
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 4.5e-273 944.5 598 81.1
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 5.8e-273 944.1 598 81.3
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.8e-273 944.1 598 80.9
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 9.9e-273 943.3 598 80.9
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.7e-272 942.6 598 80.8
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.4e-271 939.5 601 81.4
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.9e-271 939.1 598 80.6
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.2e-271 937.9 598 79.8
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 9.3e-271 936.8 598 80.6
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.2e-270 936.4 598 80.3
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 2.3e-269 932.2 600 80.0
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 5.1e-269 931.0 598 79.9
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 4.3e-268 927.9 598 79.9
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 7.4e-268 927.2 600 79.8
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 1.6e-267 926.0 598 80.4
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 3.7e-267 924.9 598 80.6
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.5e-265 919.5 598 78.8
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 3.4e-265 918.3 597 78.9
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.0e-264 916.8 598 79.8
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 3.8e-264 914.8 591 80.4
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 4.9e-264 914.4 598 79.4
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.1e-263 913.3 603 79.4
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.1e-263 913.3 598 79.6
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 4.2e-263 911.4 598 77.9
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.2e-262 909.8 600 78.0
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 7.9e-262 907.1 598 78.1
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 3.0e-261 905.2 598 78.1
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 3.0e-261 905.2 599 77.3
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 5.1e-261 904.4 600 78.7
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 5.1e-261 904.4 598 78.9
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 8.7e-261 903.7 598 77.4
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 8.7e-261 903.7 598 78.6
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.1e-260 903.3 599 76.6
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 2.5e-260 902.1 598 78.1
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 3.1e-258 895.2 601 76.9
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 5.3e-258 894.4 609 74.5
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.3e-258 894.4 601 75.9
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 3.4e-257 891.7 600 77.7
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 7.6e-257 890.6 596 76.7
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.7e-256 889.4 598 77.4
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 2.2e-256 889.0 603 75.5
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.2e-256 889.0 598 77.3
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.8e-256 888.3 603 75.6
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.0e-256 887.9 603 75.3
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 2.5e-255 885.6 599 76.0
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 3.2e-255 885.2 596 76.2
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 4.2e-255 884.8 599 75.6
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 5.5e-255 884.4 600 76.8
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 5.5e-255 884.4 608 75.2
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.6e-254 882.9 599 75.6
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 3.5e-254 881.7 599 78.0
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 3.0e-253 878.6 600 75.8
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.9e-253 878.2 600 75.8
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-252 876.3 600 75.7
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.9e-252 875.9 609 71.6
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.7e-252 874.4 602 75.6
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.3e-251 873.2 609 71.3
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 2.0e-249 865.9 603 76.0
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 2.6e-249 865.5 612 74.0
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 4.5e-249 864.8 600 75.2
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 5.9e-249 864.4 601 73.9
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.3e-248 863.2 600 76.2
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.0e-245 853.6 609 72.1
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.1e-244 850.1 602 73.6
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.3e-243 846.7 598 73.1
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.3e-243 846.7 598 73.1
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.7e-243 846.3 613 73.1
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 6.3e-243 844.3 598 72.4
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 8.2e-243 844.0 598 76.1
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 3.1e-242 842.0 602 72.8
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 5.3e-242 841.3 598 72.9
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 5.3e-242 841.3 598 72.9
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 5.3e-242 841.3 598 72.9
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 5.3e-242 841.3 598 72.9
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.0e-241 839.3 599 72.3
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.6e-241 839.0 606 71.8
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 5.9e-241 837.8 615 69.8
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 8.5e-240 833.9 602 72.9
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 4.2e-239 831.6 602 72.4
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 7.2e-239 830.9 604 71.7
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.7e-238 828.9 603 71.5
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 6.1e-238 827.8 873 54.8
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.0e-237 827.0 605 71.6
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.8e-237 826.2 599 74.1
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 5.1e-237 824.7 609 69.8
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.0e-236 822.8 592 72.8
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.8e-235 818.9 598 70.7
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 3.7e-235 818.5 598 71.4
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 2.4e-234 815.8 607 70.7
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 5.0e-232 808.1 606 69.0
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 8.5e-232 807.4 597 70.2
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 3.6e-230 802.0 598 69.6
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 3.6e-230 802.0 597 69.7
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 3.7e-227 792.0 598 68.6
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.2e-225 786.9 597 69.2
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 7.7e-225 784.3 602 67.9
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 2.9e-224 782.3 644 64.9
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.6e-222 776.5 598 68.2
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 2.1e-222 776.2 609 66.5
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.4e-221 773.5 551 72.6
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.2e-219 766.1 549 70.1
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.9e-217 758.1 600 67.8
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 8.8e-213 744.2 611 65.3
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.2e-212 743.8 611 65.1
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.3e-207 725.7 602 65.0
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.8e-206 722.6 620 63.1
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 4.6e-201 705.3 599 62.8
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.3e-197 693.0 598 63.4
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.2e-194 682.6 569 64.1
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.6e-190 670.2 520 70.8
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-184 651.0 475 71.2
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.9e-171 605.5 600 58.0
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.5e-167 593.2 447 71.6
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.5e-148 530.8 606 49.8
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 8.4e-147 525.0 602 48.3
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 6.3e-142 508.8 603 50.2
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.9e-135 487.3 604 49.8
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.9e-130 470.7 621 44.4
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 5.7e-119 432.6 590 43.9
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.1e-105 386.0 243 79.4
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.7e-91 341.3 209 79.4
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 4.1e-77 293.5 324 52.2
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.0e-75 288.9 272 61.0
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 1.5e-74 285.0 617 32.6
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 2.1e-65 254.6 239 61.1
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 2.5e-58 231.1 587 29.6
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 5.6e-50 203.4 148 70.3
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.9e-45 188.3 151 65.6
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.3e-30 139.0 98 67.3
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.1e-28 131.7 201 40.8
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.5e-26 124.8 78 78.2
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 2.4e-24 118.2 628 21.5
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 9.0e-24 116.3 78 69.2
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 2.6e-23 114.8 215 47.4
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 7.6e-23 113.2 78 67.9
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 7.4e-18 96.7 115 43.5
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.9e-13 82.0 90 44.4
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 2.1e-12 78.6 98 48.0
Rhsim01G0254000 Rhododendron simsii HOM05D002516 ORTHO05D002703 5.1e-11 73.9 67 56.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.1e-10 72.8 59 59.3
Hma1.2p1_0226F.1_g095436 Hydrangea macrophylla HOM05D002516 ORTHO05D002703 3.3e-10 71.2 71 54.9
CSS0033368 Camellia sinensis var. sinensis HOM05D002516 ORTHO05D002703 1.7e-09 68.9 69 52.2
Hma1.2p1_2668F.1_g326570 Hydrangea macrophylla HOM05D002516 ORTHO05D002703 3.7e-09 67.8 72 52.8
CSS0005528 Camellia sinensis var. sinensis HOM05D002516 ORTHO05D002703 4.8e-09 67.4 67 53.7
vmacro14740 Vaccinium macrocarpon HOM05D002516 ORTHO05D002703 6.3e-09 67.0 69 56.5
Rhsim13G0047300 Rhododendron simsii HOM05D002516 ORTHO05D002703 8.2e-09 66.6 74 48.6
Dinv12654 Davidia involucrata HOM05D002516 ORTHO05D002703 1.1e-08 66.2 73 52.1
vmacro02780 Vaccinium macrocarpon HOM05D002516 ORTHO05D002703 9.1e-08 63.2 71 49.3
Actinidia39434 Actinidia chinensis HOM05D002516 ORTHO05D002703 1.2e-07 62.8 73 47.9
Actinidia30057 Actinidia chinensis HOM05D002516 ORTHO05D002703 1.5e-07 62.4 73 50.7
Dinv19179 Davidia involucrata HOM05D002516 ORTHO05D002703 3.4e-07 61.2 73 47.9
CAN.G186.63 Capsicum annuum HOM05D004853 ORTHO05D005865 2.9e-06 58.2 32 90.6


User provided reference genes

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