Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.6e-197 692.6 354 100.0
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.8e-173 612.1 354 88.1
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.0e-172 610.1 354 88.4
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 4.0e-172 608.2 354 87.3
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 2.0e-171 605.9 352 87.8
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 2.6e-171 605.5 353 87.3
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 7.5e-171 604.0 352 88.1
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.7e-170 602.8 353 87.0
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 8.3e-170 600.5 353 86.1
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.4e-169 599.7 354 85.6
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.8e-169 599.4 354 86.4
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 7.0e-169 597.4 354 85.6
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 1.6e-168 596.3 353 85.6
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.6e-168 596.3 353 85.0
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 2.0e-168 595.9 353 86.4
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 2.7e-168 595.5 353 85.6
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 3.5e-168 595.1 352 85.8
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 7.8e-168 594.0 354 84.7
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.0e-167 593.6 354 84.7
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.0e-167 593.6 354 84.7
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.3e-167 593.2 353 85.3
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.7e-167 592.8 352 85.2
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 2.3e-167 592.4 353 84.7
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.3e-167 592.4 354 84.5
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.9e-167 592.0 354 84.5
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 2.9e-167 592.0 353 85.8
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.9e-167 592.0 353 85.8
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 3.8e-167 591.7 354 84.2
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.0e-167 591.3 353 85.3
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 5.0e-167 591.3 354 83.9
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.1e-166 590.1 352 84.4
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 1.5e-166 589.7 352 84.7
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.5e-166 589.0 354 83.9
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 3.3e-166 588.6 353 84.1
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 3.3e-166 588.6 353 84.7
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 3.3e-166 588.6 353 84.7
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.3e-166 588.2 354 83.9
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 5.6e-166 587.8 353 84.4
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 5.6e-166 587.8 354 83.6
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 5.6e-166 587.8 354 83.9
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 7.3e-166 587.4 354 83.3
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 7.3e-166 587.4 353 84.4
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 9.5e-166 587.0 354 83.6
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 1.2e-165 586.6 353 84.1
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.2e-165 586.6 352 84.7
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.2e-165 586.6 354 83.6
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 2.1e-165 585.9 353 84.1
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.1e-165 585.9 353 84.1
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.1e-165 585.9 354 83.3
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 2.8e-165 585.5 352 84.4
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 3.6e-165 585.1 353 83.9
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 3.6e-165 585.1 352 83.2
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 3.6e-165 585.1 352 84.1
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 4.7e-165 584.7 352 84.1
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 6.1e-165 584.3 352 84.1
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 8.0e-165 583.9 354 82.8
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.4e-164 583.2 353 83.3
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 3.0e-164 582.0 352 83.2
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 5.2e-164 581.3 354 82.2
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 6.8e-164 580.9 352 83.2
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 6.8e-164 580.9 353 82.7
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.2e-163 580.1 354 82.2
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.2e-163 580.1 354 82.2
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.2e-163 580.1 354 82.2
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.2e-163 580.1 356 82.6
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.6e-163 578.9 338 87.0
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 3.4e-163 578.6 356 82.3
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.4e-163 578.6 356 82.3
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 5.7e-163 577.8 354 82.5
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 7.5e-163 577.4 354 82.2
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.9e-162 575.5 353 82.7
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 2.9e-162 575.5 354 82.8
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 2.9e-162 575.5 352 82.7
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 8.3e-162 573.9 356 81.5
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 8.3e-162 573.9 357 81.5
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.1e-161 573.5 352 82.1
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.8e-161 572.8 352 81.8
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.4e-161 572.4 354 80.8
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 3.2e-161 572.0 350 82.3
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 5.4e-161 571.2 354 80.8
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 7.0e-161 570.9 315 89.8
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.2e-160 570.1 394 76.4
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.5e-160 568.5 354 80.2
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 4.6e-160 568.2 308 90.3
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.0e-159 567.0 337 85.5
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.7e-159 566.2 352 79.5
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 3.3e-158 562.0 355 80.0
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 7.3e-158 560.8 355 79.7
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 9.5e-158 560.5 355 80.0
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.8e-157 558.9 355 78.9
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 3.6e-157 558.5 335 84.2
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 6.2e-157 557.8 355 79.4
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 8.0e-157 557.4 355 79.2
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 8.0e-157 557.4 355 79.2
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 8.0e-157 557.4 354 82.5
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 1.4e-156 556.6 355 79.2
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.4e-156 556.6 355 78.9
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.8e-156 556.2 355 78.6
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.8e-156 556.2 355 78.9
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 1.8e-156 556.2 355 78.9
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 1.8e-156 556.2 355 78.9
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.8e-156 556.2 352 79.0
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 3.1e-156 555.4 354 79.1
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 4.0e-156 555.1 355 78.6
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 4.0e-156 555.1 355 78.6
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 5.2e-156 554.7 439 70.4
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 6.8e-156 554.3 335 83.3
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.5e-155 553.1 355 78.6
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 4.4e-155 551.6 355 78.3
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.8e-155 550.4 337 82.5
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 2.2e-154 549.3 335 83.3
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.9e-154 548.9 347 78.7
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 6.4e-154 547.7 355 78.3
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.4e-153 546.6 335 81.2
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 1.9e-153 546.2 370 75.7
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 2.4e-153 545.8 355 76.9
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.0e-151 540.4 353 79.9
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 3.9e-151 538.5 356 75.0
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 5.6e-150 534.6 354 75.7
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.4e-148 530.0 352 74.1
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.2e-147 526.9 336 78.9
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 1.5e-147 526.6 354 78.0
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.9e-146 522.3 354 73.4
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 3.7e-146 521.9 395 71.4
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 7.8e-144 514.2 354 72.6
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.0e-143 513.8 354 72.9
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 3.0e-143 512.3 271 93.7
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 3.8e-138 495.4 381 69.3
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 3.2e-137 492.3 354 74.6
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 1.1e-134 483.8 284 87.3
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.8e-133 479.2 284 87.0
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.8e-133 479.2 284 87.0
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 4.7e-133 478.4 308 77.9
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.9e-129 466.5 335 68.7
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 9.6e-126 454.1 354 69.8
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 8.1e-125 451.1 353 68.6
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 9.3e-121 437.6 238 89.5
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 4.8e-117 425.2 251 81.7
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 6.2e-117 424.9 364 63.5
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 3.2e-113 412.5 251 82.1
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 4.3e-110 402.1 318 60.7
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.4e-105 387.1 216 87.0
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.1e-102 377.5 261 72.0
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 7.6e-99 364.8 349 53.0
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 4.2e-97 359.0 311 59.2
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 2.1e-48 197.2 148 70.3
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.8e-39 167.5 188 53.2
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 7.0e-36 155.6 179 54.7
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 8.9e-31 138.7 79 84.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 3.5e-27 126.7 80 78.8
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 1.1e-25 121.7 74 79.7
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 4.3e-25 119.8 73 82.2
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 6.6e-18 95.9 79 63.3
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.5e-14 84.7 51 80.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 9.3e-12 75.5 61 67.2
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 6.0e-11 72.8 97 47.4
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 3.9e-10 70.1 42 76.2
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 2.5e-09 67.4 100 41.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 4.3e-09 66.6 60 60.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 4.3e-09 66.6 60 60.0


User provided reference genes

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