Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.1e-92 343.6 206 100.0
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.4e-57 226.9 197 80.2
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 1.6e-43 180.3 196 68.9
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.3e-37 160.6 197 63.5
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 3.7e-37 159.1 196 62.8
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.4e-36 157.1 168 64.9
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.6e-35 153.7 139 76.3
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 6.3e-29 131.7 128 57.8
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 5.4e-28 128.6 190 51.1
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.4e-28 128.6 199 53.3
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 4.5e-27 125.6 198 47.5
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 7.8e-27 124.8 196 50.0
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 7.8e-27 124.8 196 48.0
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 3.3e-25 119.4 210 52.9
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 4.3e-25 119.0 195 54.9
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 5.6e-25 118.6 196 55.1
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 1.2e-24 117.5 195 48.2
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 8.9e-23 111.3 194 49.5
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 2.0e-22 110.2 209 43.1
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 4.4e-22 109.0 194 55.2
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 9.8e-22 107.8 129 52.7
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.3e-21 107.5 196 51.0
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 3.7e-21 105.9 195 48.2
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 3.7e-21 105.9 200 55.0
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 4.9e-21 105.5 196 51.0
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 4.9e-21 105.5 129 48.1
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 6.4e-21 105.1 196 47.4
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 8.3e-21 104.8 200 50.0
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.1e-20 104.4 129 52.7
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.8e-20 103.6 196 48.5
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 1.8e-20 103.6 200 53.0
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 2.4e-20 103.2 129 51.9
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 3.2e-20 102.8 198 44.4
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 4.1e-20 102.4 197 51.8
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 5.4e-20 102.1 196 48.5
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 7.0e-20 101.7 200 44.5
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 7.0e-20 101.7 121 52.9
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.2e-19 100.9 198 47.5
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 2.7e-19 99.8 196 42.3
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 4.6e-19 99.0 221 46.2
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 6.0e-19 98.6 196 43.4
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 7.8e-19 98.2 197 47.2
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 1.7e-18 97.1 196 49.5
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 1.7e-18 97.1 127 51.2
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 2.3e-18 96.7 196 41.8
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 3.9e-18 95.9 126 47.6
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 5.0e-18 95.5 198 43.4
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 5.0e-18 95.5 213 45.1
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 5.0e-18 95.5 194 51.0
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 6.6e-18 95.1 200 41.0
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 6.6e-18 95.1 124 47.6
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 6.6e-18 95.1 129 48.1
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 6.6e-18 95.1 131 47.3
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.1e-17 94.4 198 50.5
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.9e-17 93.6 127 45.7
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.9e-17 93.6 176 54.5
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 1.9e-17 93.6 125 52.0
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 2.5e-17 93.2 61 77.0
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.3e-17 92.8 195 39.0
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 3.3e-17 92.8 204 39.7
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 4.3e-17 92.4 195 42.1
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 4.3e-17 92.4 199 47.2
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 4.3e-17 92.4 125 51.2
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 5.6e-17 92.0 126 49.2
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 5.6e-17 92.0 126 48.4
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 5.6e-17 92.0 121 51.2
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 5.6e-17 92.0 195 47.2
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 9.5e-17 91.3 195 41.5
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 9.5e-17 91.3 127 48.8
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 9.5e-17 91.3 197 43.1
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 1.2e-16 90.9 125 45.6
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.2e-16 90.9 196 49.5
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.6e-16 90.5 195 43.6
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 1.6e-16 90.5 196 49.5
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.1e-16 90.1 120 48.3
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 2.8e-16 89.7 121 50.4
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.6e-16 89.4 127 44.1
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 3.6e-16 89.4 202 45.5
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 3.6e-16 89.4 209 47.8
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 3.6e-16 89.4 126 46.0
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 4.7e-16 89.0 196 45.4
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 6.2e-16 88.6 126 46.8
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 6.2e-16 88.6 47 91.5
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.4e-15 87.4 127 43.3
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.4e-15 87.4 197 38.6
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.8e-15 87.0 126 47.6
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.8e-15 87.0 200 43.0
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.8e-15 87.0 196 45.4
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 2.3e-15 86.7 196 46.9
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 3.1e-15 86.3 99 54.5
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 4.0e-15 85.9 122 47.5
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 4.0e-15 85.9 196 48.0
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 4.0e-15 85.9 123 48.0
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 5.2e-15 85.5 198 40.4
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.2e-14 84.3 190 45.8
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.2e-14 84.3 140 53.6
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.6e-14 83.2 98 56.1
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 2.6e-14 83.2 195 45.1
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 2.6e-14 83.2 198 50.0
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 3.4e-14 82.8 126 45.2
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 3.4e-14 82.8 130 62.3
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.3e-13 80.9 127 44.9
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.7e-13 80.5 122 44.3
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 1.7e-13 80.5 204 45.1
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 3.7e-13 79.3 131 45.0
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 6.4e-13 78.6 197 44.7
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 8.3e-13 78.2 128 39.1
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 8.3e-13 78.2 107 48.6
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.4e-12 77.4 53 73.6
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.9e-12 77.0 125 43.2
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.4e-12 76.6 54 70.4
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.2e-12 76.3 53 75.5
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.2e-12 76.3 197 38.6
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 7.0e-12 75.1 52 73.1
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 9.2e-12 74.7 115 43.5
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.6e-11 73.9 57 68.4
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 2.0e-11 73.6 114 43.0
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 2.7e-11 73.2 56 71.4
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 2.7e-11 73.2 56 71.4
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 3.5e-11 72.8 93 48.4
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 3.5e-11 72.8 48 72.9
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.0e-11 72.0 70 54.3
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 7.8e-11 71.6 127 52.0
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.3e-10 70.9 200 43.5
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.3e-10 70.9 175 35.4
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.3e-10 70.9 175 35.4
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 1.7e-10 70.5 46 76.1
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.7e-10 70.5 46 76.1
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.7e-10 70.5 58 63.8
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 3.9e-10 69.3 93 47.3
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 6.6e-10 68.6 57 64.9
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.9e-09 67.0 46 71.7
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 1.9e-09 67.0 46 71.7
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 1.9e-09 67.0 46 71.7
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.9e-09 67.0 46 71.7
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 3.3e-09 66.2 54 68.5
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 3.3e-09 66.2 54 68.5
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 4.3e-09 65.9 93 44.1
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 7.3e-09 65.1 59 62.7
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 7.3e-09 65.1 59 62.7
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 7.3e-09 65.1 59 62.7
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 7.3e-09 65.1 55 63.6
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 7.3e-09 65.1 46 71.7
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 7.3e-09 65.1 54 66.7
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.1e-07 61.2 127 35.4
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.8e-07 60.5 242 35.1
Gohir.A01G180500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 7.5e-06 55.1 105 59.0


User provided reference genes

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