Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 0.0e+00 1181.8 594 100.0
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.7e-159 567.0 613 54.6
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 3.4e-152 542.7 340 83.5
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 3.1e-129 466.5 600 48.5
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.1e-121 441.4 591 46.7
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 4.5e-120 436.0 558 47.7
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 1.6e-112 411.0 693 39.5
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 1.4e-108 397.9 530 46.6
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.2e-107 394.8 603 42.8
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 3.2e-105 386.7 616 42.7
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 5.9e-104 382.5 588 43.0
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.7e-103 380.9 507 46.0
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.1e-102 378.3 616 41.2
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 7.3e-102 375.6 588 42.2
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 4.7e-101 372.9 596 41.3
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.1e-100 371.7 340 59.7
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.6e-99 367.1 600 41.2
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 4.4e-99 366.3 601 40.9
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.3e-98 364.8 619 41.0
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.9e-98 363.6 606 40.4
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 1.1e-97 361.7 594 40.9
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 2.4e-97 360.5 599 41.9
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 2.4e-97 360.5 601 40.1
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 3.2e-97 360.1 600 40.8
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 9.2e-97 358.6 607 41.0
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 1.2e-96 358.2 598 39.6
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.6e-96 357.8 603 41.5
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 1.6e-96 357.8 618 39.5
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 4.6e-96 356.3 594 40.7
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.7e-95 354.4 594 40.6
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 3.3e-94 350.1 528 42.0
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.8e-93 347.1 600 39.0
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 8.9e-92 342.0 516 42.1
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 7.5e-91 339.0 336 55.7
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 2.4e-89 334.0 590 40.3
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 2.4e-89 334.0 326 54.6
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 3.2e-89 333.6 588 38.9
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 3.0e-87 327.0 607 38.1
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 1.5e-86 324.7 598 40.0
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 4.3e-86 323.2 600 39.8
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 7.3e-86 322.4 301 58.8
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 8.1e-85 318.9 592 39.5
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 8.1e-85 318.9 336 56.2
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 2.4e-84 317.4 606 37.0
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.2e-84 316.2 322 54.7
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.2e-84 316.2 322 54.7
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.2e-84 316.2 322 54.7
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 1.5e-83 314.7 301 59.1
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 1.5e-83 314.7 591 36.9
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 5.8e-83 312.8 338 53.0
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 2.9e-82 310.5 556 39.2
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 3.8e-82 310.1 601 38.4
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 1.9e-81 307.8 583 38.1
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 9.2e-81 305.4 327 55.0
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 9.2e-81 305.4 326 53.7
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 1.6e-80 304.7 323 54.5
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 1.0e-79 302.0 299 57.2
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 1.0e-79 302.0 338 51.5
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 2.3e-79 300.8 306 57.5
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 3.9e-79 300.1 518 41.7
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 6.6e-79 299.3 302 57.3
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.9e-78 297.7 603 38.1
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 2.1e-77 294.3 598 36.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 2.1e-77 294.3 612 36.9
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 1.1e-76 292.0 350 47.4
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 1.4e-76 291.6 559 37.0
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.8e-76 291.2 591 34.7
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 5.2e-76 289.7 504 39.9
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 5.8e-75 286.2 587 37.0
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 9.9e-75 285.4 316 51.6
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.3e-74 285.0 348 49.4
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 2.4e-73 280.8 553 38.3
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.2e-73 280.0 541 35.9
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 7.1e-73 279.3 333 48.3
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 7.1e-73 279.3 325 50.2
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 1.6e-72 278.1 568 35.0
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.4e-68 264.2 596 34.2
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.8e-66 256.9 590 33.7
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 1.4e-65 255.0 254 55.5
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 1.4e-65 255.0 508 36.0
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 4.2e-65 253.4 324 45.1
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 4.2e-65 253.4 324 45.1
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 7.1e-65 252.7 547 34.4
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 1.3e-63 248.4 254 55.1
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 4.3e-62 243.4 539 33.6
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 3.1e-60 237.3 300 47.0
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 4.0e-60 236.9 300 47.0
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 2.0e-59 234.6 304 46.4
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 3.8e-58 230.3 301 43.9
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 1.1e-57 228.8 297 44.4
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 2.4e-57 227.6 307 41.7
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 5.5e-57 226.5 541 33.5
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 1.2e-56 225.3 303 43.6
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 2.1e-56 224.6 301 44.2
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 2.7e-56 224.2 324 42.6
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 7.9e-56 222.6 459 33.8
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 1.0e-55 222.2 299 42.8
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 1.0e-55 222.2 226 56.2
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 1.0e-55 222.2 293 43.3
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 1.8e-55 221.5 305 40.7
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 1.8e-55 221.5 305 40.7
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 6.7e-55 219.5 177 67.8
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 8.7e-55 219.2 307 41.7
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 7.4e-54 216.1 391 38.4
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 2.8e-53 214.2 306 42.8
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 2.8e-53 214.2 293 43.3
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.6e-51 207.6 292 42.8
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 3.8e-50 203.8 322 43.2
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 1.1e-46 192.2 312 39.1
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 4.2e-41 173.7 352 34.4
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 4.6e-40 170.2 293 38.9
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 7.9e-40 169.5 362 34.5
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.9e-38 164.9 291 38.5
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 3.4e-35 154.1 422 30.3
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.4e-33 148.7 188 46.8
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.5e-33 147.9 188 48.9
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 4.2e-33 147.1 368 30.7
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 6.1e-32 143.3 292 34.6
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 3.9e-31 140.6 324 31.8
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 3.9e-31 140.6 324 32.4
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 2.6e-30 137.9 226 38.1
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 6.9e-28 129.8 147 53.7
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 1.3e-26 125.6 112 55.4
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 5.5e-25 120.2 347 31.1
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 3.3e-22 110.9 224 34.8
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.4e-20 104.8 341 28.4
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 4.1e-20 104.0 160 37.5
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 2.0e-19 101.7 176 38.6
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 7.7e-19 99.8 148 43.2
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 3.2e-17 94.4 103 46.6
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 7.2e-17 93.2 162 38.9
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 1.0e-15 89.4 167 40.1
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 1.2e-14 85.9 177 34.5
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 1.1e-12 79.3 278 29.5
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 1.8e-12 78.6 170 33.5
MSTRG.21993 Avicennia marina HOM05D004311 ORTHO05D005145 1.0e-10 72.8 144 36.8
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 1.0e-10 72.8 141 33.3
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 2.2e-10 71.6 236 25.8
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 1.9e-09 68.6 52 57.7
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.2e-08 65.9 53 60.4
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 1.6e-08 65.5 61 55.7
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 3.6e-08 64.3 70 47.1
PRCOL_00004343 Prasinoderma coloniale HOM05D004311 ORTHO05D005145 4.0e-07 60.8 261 28.7
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 6.8e-07 60.1 64 45.3
TAR374G0043 Trochodendron aralioides HOM05D004311 ORTHO05D005145 8.8e-07 59.7 62 46.8
DCAR_005511 Daucus carota HOM05D004311 ORTHO05D005145 1.5e-06 58.9 55 45.5
Lsat_1_v5_gn_8_86701 Lactuca sativa HOM05D034205 ORTHO05D035130 2.0e-06 58.5 73 38.4
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 3.4e-06 57.8 104 33.7


User provided reference genes

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