Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0021100 Rhododendron simsii HOM05D020104 ORTHO05D000106 3.2e-256 887.9 431 100.0
RhsimUnG0107100 Rhododendron simsii HOM05D020104 ORTHO05D000106 1.4e-115 420.6 355 63.9
RhsimUnG0107200 Rhododendron simsii HOM05D020104 ORTHO05D000106 2.0e-64 250.8 211 64.5
Rhsim09G0021200 Rhododendron simsii HOM05D020104 ORTHO05D000106 5.9e-61 239.2 502 33.9
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.0e-41 175.3 286 36.7
Rhsim09G0020200 Rhododendron simsii HOM05D063099 ORTHO05D000106 2.0e-37 161.0 206 43.7
Rhsim05G0207700 Rhododendron simsii HOM05D020104 ORTHO05D338591 3.4e-32 143.7 71 91.5
Rhsim09G0021300 Rhododendron simsii HOM05D063099 ORTHO05D339027 2.3e-20 104.4 206 34.5
QL05p010466 Quercus lobata HOM05D000176 ORTHO05D000106 3.2e-14 84.0 209 29.2
Sabra01G0157300 Salix brachista HOM05D000176 ORTHO05D000106 7.1e-14 82.8 213 29.1
Psat4g187840 Pisum sativum HOM05D000176 ORTHO05D000106 4.6e-13 80.1 196 30.1
Cpa.g.sc136.13 Carica papaya HOM05D000176 ORTHO05D000106 1.0e-12 79.0 198 27.8
Lj3g0023710 Lotus japonicus HOM05D000176 ORTHO05D000106 1.0e-12 79.0 277 26.7
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 2.3e-12 77.8 211 27.5
Hund07743 Selenicereus undatus HOM05D000176 ORTHO05D000106 2.3e-12 77.8 211 27.0
arahy.Tifrunner.gnm1.ann1.6TXF5J Arachis hypogaea HOM05D000176 ORTHO05D000106 3.0e-12 77.4 196 29.6
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 3.0e-12 77.4 275 26.2
MD17G1142300 Malus domestica HOM05D000176 ORTHO05D000106 3.0e-12 77.4 211 26.1
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 3.9e-12 77.0 209 26.8
arahy.Tifrunner.gnm1.ann1.PINR01 Arachis hypogaea HOM05D000176 ORTHO05D000106 5.1e-12 76.6 196 29.6
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 5.1e-12 76.6 198 26.8
CsaV3_5G025870 Cucumis sativus L. HOM05D000176 ORTHO05D000106 5.1e-12 76.6 206 28.6
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 5.1e-12 76.6 211 27.0
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 6.6e-12 76.3 198 26.3
AUR62022514 Chenopodium quinoa HOM05D000176 ORTHO05D000106 6.6e-12 76.3 204 27.5
MD17G1142200 Malus domestica HOM05D000176 ORTHO05D000106 6.6e-12 76.3 211 27.0
Sed0026480 Sechium edule HOM05D000176 ORTHO05D000106 6.6e-12 76.3 465 21.9
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 6.6e-12 76.3 198 26.8
TWI36G1460 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 6.6e-12 76.3 198 27.3
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 8.6e-12 75.9 198 25.8
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 8.6e-12 75.9 198 25.8
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 8.6e-12 75.9 198 25.8
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 8.6e-12 75.9 198 25.8
Ciclev10014335m.g Citrus clementina HOM05D000176 ORTHO05D000106 8.6e-12 75.9 198 26.3
Duzib138G0102 Durio zibethinus HOM05D000176 ORTHO05D000106 8.6e-12 75.9 198 26.8
Duzib211G0089 Durio zibethinus HOM05D000176 ORTHO05D000106 8.6e-12 75.9 198 26.8
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 8.6e-12 75.9 221 27.6
Thhalv10002429m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 8.6e-12 75.9 198 27.3
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.1e-11 75.5 198 26.3
Sp3g23470 Schrenkiella parvula HOM05D000176 ORTHO05D000106 1.1e-11 75.5 198 25.8
Gorai.001G193000 Gossypium raimondii HOM05D000176 ORTHO05D000106 1.5e-11 75.1 191 27.2
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.9e-11 74.7 205 26.8
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.9e-11 74.7 205 26.8
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 2.5e-11 74.3 211 27.5
Ca_23329_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.5e-11 74.3 189 28.6
MELO3C002881.2 Cucumis melo HOM05D000176 ORTHO05D000106 2.5e-11 74.3 206 27.7
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 2.5e-11 74.3 211 25.6
Aa31sc575G20 Aethionema arabicum HOM05D000176 ORTHO05D000106 3.3e-11 73.9 198 25.8
CsaV3_6G015670 Cucumis sativus L. HOM05D000176 ORTHO05D000106 3.3e-11 73.9 211 26.1
MD09G1156100 Malus domestica HOM05D000176 ORTHO05D000106 3.3e-11 73.9 211 26.1
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 3.3e-11 73.9 211 25.6
TPR.G40704 Trifolium pratense HOM05D000176 ORTHO05D000106 3.3e-11 73.9 278 24.8
GSVIVG01006780001 Vitis vinifera HOM05D000176 ORTHO05D000106 3.3e-11 73.9 280 24.6
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 4.3e-11 73.6 211 27.0
MELO3C019704.2 Cucumis melo HOM05D000176 ORTHO05D000106 4.3e-11 73.6 211 26.1
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 4.3e-11 73.6 211 26.5
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 5.6e-11 73.2 209 28.2
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 5.6e-11 73.2 211 26.5
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 7.3e-11 72.8 209 26.8
TPR.G1842 Trifolium pratense HOM05D000176 ORTHO05D000106 7.3e-11 72.8 187 26.7
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 9.6e-11 72.4 211 26.1
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 9.6e-11 72.4 211 26.5
Rhsim10G0041500 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.2e-10 72.0 191 30.4
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 1.6e-10 71.6 210 28.1
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 1.6e-10 71.6 209 27.8
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 1.6e-10 71.6 211 25.6
Aa31LG10G5620 Aethionema arabicum HOM05D000176 ORTHO05D003511 2.1e-10 71.2 202 30.7
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 2.1e-10 71.2 211 26.1
PGR042G1331 Punica granatum HOM05D000176 ORTHO05D000106 2.8e-10 70.9 221 27.1
Psat5g183880 Pisum sativum HOM05D000176 ORTHO05D000106 3.6e-10 70.5 191 26.2
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 3.6e-10 70.5 209 25.8
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 4.7e-10 70.1 211 25.6
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 4.7e-10 70.1 211 25.6
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 4.7e-10 70.1 211 25.1
Peaxi162Scf00384g01218 Petunia axillaris HOM05D000176 ORTHO05D000106 4.7e-10 70.1 211 25.6
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 6.2e-10 69.7 211 25.6
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 6.2e-10 69.7 211 26.1
Rhsim05G0077700 Rhododendron simsii HOM05D000176 ORTHO05D000106 6.2e-10 69.7 207 29.5
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 8.1e-10 69.3 211 25.1
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 8.1e-10 69.3 211 25.1
VMungo1309G1365 Vigna mungo HOM05D000176 ORTHO05D000106 8.1e-10 69.3 165 32.7
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 8.1e-10 69.3 211 25.1
A06p13970 Brassica napus HOM05D000176 ORTHO05D000106 1.1e-09 68.9 206 26.2
BraA06t24537Z Brassica rapa HOM05D000176 ORTHO05D000106 1.1e-09 68.9 206 26.2
Atru.chr6.3350 Acer truncatum HOM05D000176 ORTHO05D000106 1.4e-09 68.6 198 24.2
Nitab4.5_0000476g0120 Nicotiana tabacum HOM05D000176 ORTHO05D000106 1.8e-09 68.2 211 24.6
Sabra02G0169600 Salix brachista HOM05D000176 ORTHO05D000106 1.8e-09 68.2 191 25.1
AL1G30280 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 2.4e-09 67.8 205 25.4
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 3.1e-09 67.4 211 25.1
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 3.1e-09 67.4 209 26.3
AT1G17930 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 4.0e-09 67.0 205 25.4
BcaB07g34015 Brassica carinata HOM05D000176 ORTHO05D000106 4.0e-09 67.0 206 24.8
C05p16290 Brassica napus HOM05D000176 ORTHO05D000106 4.0e-09 67.0 206 24.8
BolC5t30331H Brassica oleracea HOM05D000176 ORTHO05D000106 4.0e-09 67.0 206 24.8
Cc03_g15950 Coffea canephora HOM05D000176 ORTHO05D003511 4.0e-09 67.0 207 28.0
Sp1g16000 Schrenkiella parvula HOM05D000176 ORTHO05D000106 5.2e-09 66.6 203 23.6
Thhalv10000135m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 6.8e-09 66.2 213 26.8
Oeu063771.2 Olea europaea HOM05D000176 ORTHO05D000106 6.8e-09 66.2 211 24.6
Prupe.8G014000 Prunus persica HOM05D000176 ORTHO05D000106 6.8e-09 66.2 199 25.6
Sopen05g034420 Solanum pennellii HOM05D000176 ORTHO05D000106 6.8e-09 66.2 211 24.6
AL1G54690 Arabidopsis lyrata HOM05D000176 ORTHO05D003511 8.9e-09 65.9 186 29.6
CARHR018550 Cardamine hirsuta HOM05D000176 ORTHO05D000106 8.9e-09 65.9 203 26.6
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 8.9e-09 65.9 209 25.4
HanXRQChr09g0246821 Helianthus annuus HOM05D000176 ORTHO05D000106 8.9e-09 65.9 211 25.1
Solyc05g056010.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 8.9e-09 65.9 211 24.6
AT1G48120 Arabidopsis thaliana HOM05D000176 ORTHO05D003511 1.2e-08 65.5 186 29.6
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.2e-08 65.5 211 25.1
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.2e-08 65.5 211 25.1
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 1.2e-08 65.5 191 25.1
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.2e-08 65.5 191 25.1
Ciclev10025397m.g Citrus clementina HOM05D000176 ORTHO05D000106 1.2e-08 65.5 216 25.0
PGSC0003DMG400023346 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.2e-08 65.5 211 24.6
THA.LOC104823099 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 1.2e-08 65.5 213 25.4
AT2G25010 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 1.5e-08 65.1 213 26.3
A06p04680 Brassica napus HOM05D000176 ORTHO05D003511 1.5e-08 65.1 186 29.0
C06p02530 Brassica napus HOM05D000176 ORTHO05D003511 1.5e-08 65.1 186 29.0
BraA06t23671Z Brassica rapa HOM05D000176 ORTHO05D003511 1.5e-08 65.1 186 29.0
Thhalv10007522m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 1.5e-08 65.1 203 23.6
Thhalv10011184m.g Eutrema salsugineum HOM05D000176 ORTHO05D003511 1.5e-08 65.1 186 29.6
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.5e-08 65.1 211 24.6
Sp4g03990 Schrenkiella parvula HOM05D000176 ORTHO05D000106 1.5e-08 65.1 213 26.3
BolC6t35381H Brassica oleracea HOM05D000176 ORTHO05D003511 2.0e-08 64.7 186 29.0
CARHR037760 Cardamine hirsuta HOM05D000176 ORTHO05D003511 2.0e-08 64.7 186 29.6
Sp1g35090 Schrenkiella parvula HOM05D000176 ORTHO05D003511 2.0e-08 64.7 186 29.6
ECA240G4387 Erigeron canadensis HOM05D000176 ORTHO05D000106 2.6e-08 64.3 211 25.1
THA.LOC104802612 Tarenaya hassleriana HOM05D000176 ORTHO05D003511 2.6e-08 64.3 186 30.6
AL4G16100 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 3.4e-08 63.9 213 26.3
Carub.0001s3722 Capsella rubella HOM05D000176 ORTHO05D003511 3.4e-08 63.9 186 29.6
Lsat_1_v5_gn_7_67341 Lactuca sativa HOM05D000176 ORTHO05D000106 4.4e-08 63.5 239 25.1
GSVIVG01026490001 Vitis vinifera HOM05D000176 ORTHO05D000106 4.4e-08 63.5 192 28.6
Aa31sc83G70 Aethionema arabicum HOM05D000176 ORTHO05D000106 5.8e-08 63.2 213 25.8
MSTRG.13026 Avicennia marina HOM05D000176 ORTHO05D000106 5.8e-08 63.2 207 27.1
ClCG06G006800 Citrullus lanatus HOM05D000176 ORTHO05D000013 5.8e-08 63.2 195 25.6
THA.LOC104799018 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 5.8e-08 63.2 205 23.4
BolC4t27041H Brassica oleracea HOM05D000176 ORTHO05D000106 7.6e-08 62.8 213 25.4
BcaB06g28031 Brassica carinata HOM05D000176 ORTHO05D000106 9.9e-08 62.4 213 25.8
ClCG11G000230 Citrullus lanatus HOM05D000176 ORTHO05D000106 9.9e-08 62.4 203 27.6
Dinv18200 Davidia involucrata HOM05D000176 ORTHO05D000106 9.9e-08 62.4 211 23.7
Aa31LG11G4340 Aethionema arabicum HOM05D000176 ORTHO05D000106 1.3e-07 62.0 203 23.6
BcaC02g08378 Brassica carinata HOM05D000176 ORTHO05D000106 1.3e-07 62.0 213 25.4
C04p55010 Brassica napus HOM05D000176 ORTHO05D000106 1.3e-07 62.0 213 25.4
Oeu049413.1 Olea europaea HOM05D000176 ORTHO05D000106 1.3e-07 62.0 207 26.1
CSS0043966 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.7e-07 61.6 215 26.5
A04p19430 Brassica napus HOM05D000176 ORTHO05D000106 2.2e-07 61.2 213 25.4
BraA04t17538Z Brassica rapa HOM05D000176 ORTHO05D000106 2.2e-07 61.2 213 25.4
QL02p039861 Quercus lobata HOM05D000176 ORTHO05D000106 2.2e-07 61.2 173 28.3
DCAR_030358 Daucus carota HOM05D000176 ORTHO05D000106 2.9e-07 60.8 195 27.7
Migut.M01636 Erythranthe guttata HOM05D000176 ORTHO05D000106 2.9e-07 60.8 207 26.1
Oeu049416.1 Olea europaea HOM05D000176 ORTHO05D000106 2.9e-07 60.8 207 26.1
CSS0025783 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.8e-07 60.5 206 26.7
CSS0037304 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.8e-07 60.5 206 26.7
Lj4g0008099 Lotus japonicus HOM05D000176 ORTHO05D000106 8.4e-07 59.3 168 29.2
Os01g0531200 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 8.4e-07 59.3 194 24.2
Os01g0738500 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 8.4e-07 59.3 194 24.2
SGA_v2.0_scaffold42G15967 Striga asiatica HOM05D000176 ORTHO05D000106 8.4e-07 59.3 207 26.6
QL02p103239 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-06 58.9 203 25.6
RhsimUnG0202400 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.1e-06 58.9 206 26.7
MELO3C022946.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.4e-06 58.5 203 27.1
CsaV3_5G015580 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.4e-06 58.5 203 27.1
QL10p063859 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-06 58.5 205 25.9
RhsimUnG0135500 Rhododendron simsii HOM05D010733 ORTHO05D000106 1.9e-06 58.2 209 26.3
QL05p088783 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-06 57.8 205 25.9
SHI45281 Sapria himalayana HOM05D000176 ORTHO05D000106 2.4e-06 57.8 173 25.4
Sed0014738 Sechium edule HOM05D000176 ORTHO05D000106 2.4e-06 57.8 202 26.7
Os02g0592600 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 3.2e-06 57.4 194 23.7
Rhsim02G0127300 Rhododendron simsii HOM05D000176 ORTHO05D000106 3.2e-06 57.4 96 34.4
Rhsim10G0000300 Rhododendron simsii HOM05D000176 ORTHO05D000106 3.2e-06 57.4 161 29.8
CSS0042023 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.2e-06 57.0 186 25.8
CSS0045961 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.2e-06 57.0 206 26.2
QL05p048284 Quercus lobata HOM05D000176 ORTHO05D000106 4.2e-06 57.0 205 25.9
QL08p006787 Quercus lobata HOM05D000176 ORTHO05D000106 4.2e-06 57.0 205 25.9
Rhsim09G0066600 Rhododendron simsii HOM05D000176 ORTHO05D000106 4.2e-06 57.0 87 35.6
QL11p038845 Quercus lobata HOM05D000176 ORTHO05D000106 9.3e-06 55.8 166 25.9


User provided reference genes

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