Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.3e-123 445.7 238 100.0
Rhsim09G0019500 Rhododendron simsii HOM05D004449 ORTHO05D338492 4.2e-24 115.9 70 92.9
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.6e-23 114.0 79 77.2
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.1e-22 109.0 73 80.8
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-21 107.8 70 82.9
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.3e-21 105.9 70 81.4
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 7.3e-21 105.1 70 78.6
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.1e-20 103.6 70 80.0
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 4.8e-20 102.4 70 75.7
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 2.4e-19 100.1 70 75.7
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 2.4e-19 100.1 70 75.7
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.1e-19 99.8 70 72.9
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 1.5e-18 97.4 74 68.9
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 2.0e-18 97.1 70 71.4
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 2.0e-18 97.1 93 60.2
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 2.0e-18 97.1 108 54.6
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 3.4e-18 96.3 70 71.4
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 3.4e-18 96.3 70 68.6
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 3.4e-18 96.3 70 71.4
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 3.4e-18 96.3 70 71.4
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 4.5e-18 95.9 70 70.0
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 4.5e-18 95.9 69 72.5
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 4.5e-18 95.9 69 72.5
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 5.8e-18 95.5 70 71.4
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 5.8e-18 95.5 93 59.1
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.3e-17 94.4 70 70.0
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 1.3e-17 94.4 93 58.1
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 1.3e-17 94.4 70 68.6
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 3.8e-17 92.8 78 62.8
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 3.8e-17 92.8 70 67.1
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 4.9e-17 92.4 71 69.0
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 8.4e-17 91.7 93 55.9
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 8.4e-17 91.7 93 57.0
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 8.4e-17 91.7 70 67.1
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.4e-17 91.7 73 63.0
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 1.4e-16 90.9 71 69.0
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 1.4e-16 90.9 69 68.1
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.9e-16 90.5 70 67.1
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 1.9e-16 90.5 70 67.1
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.9e-16 90.5 70 67.1
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 1.9e-16 90.5 71 69.0
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.9e-16 90.5 70 64.3
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.4e-16 90.1 70 64.3
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 2.4e-16 90.1 70 65.7
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 2.4e-16 90.1 70 67.1
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 2.4e-16 90.1 70 67.1
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 2.4e-16 90.1 70 67.1
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 2.4e-16 90.1 70 62.9
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 3.2e-16 89.7 70 67.1
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.2e-16 89.7 70 65.7
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 3.2e-16 89.7 70 68.6
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 3.2e-16 89.7 71 67.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 3.2e-16 89.7 70 64.3
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 4.2e-16 89.4 70 65.7
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.2e-16 89.4 140 42.9
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 5.4e-16 89.0 70 65.7
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 5.4e-16 89.0 70 65.7
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 5.4e-16 89.0 70 65.7
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 5.4e-16 89.0 70 65.7
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 5.4e-16 89.0 70 65.7
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 5.4e-16 89.0 71 67.6
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 7.1e-16 88.6 70 65.7
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 7.1e-16 88.6 70 65.7
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 7.1e-16 88.6 71 66.2
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 7.1e-16 88.6 71 66.2
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 7.1e-16 88.6 70 67.1
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 9.3e-16 88.2 84 53.6
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 9.3e-16 88.2 70 65.7
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 9.3e-16 88.2 70 65.7
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 9.3e-16 88.2 70 65.7
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 1.2e-15 87.8 70 64.3
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.2e-15 87.8 70 65.7
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.2e-15 87.8 71 67.6
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.6e-15 87.4 70 65.7
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.6e-15 87.4 70 64.3
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.6e-15 87.4 71 64.8
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 2.1e-15 87.0 70 65.7
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 2.1e-15 87.0 112 47.3
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 2.1e-15 87.0 70 64.3
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.1e-15 87.0 70 64.3
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.1e-15 87.0 70 64.3
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 2.1e-15 87.0 70 65.7
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 2.1e-15 87.0 70 64.3
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 2.1e-15 87.0 71 63.4
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.7e-15 86.7 71 66.2
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 3.5e-15 86.3 68 66.2
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.5e-15 86.3 75 60.0
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.5e-15 86.3 70 64.3
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 3.5e-15 86.3 70 62.9
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 3.5e-15 86.3 70 62.9
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 4.6e-15 85.9 71 66.2
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 4.6e-15 85.9 71 66.2
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 4.6e-15 85.9 112 46.4
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 4.6e-15 85.9 70 64.3
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 4.6e-15 85.9 70 62.9
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 4.6e-15 85.9 70 64.3
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.0e-15 85.5 70 62.9
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.0e-15 85.5 70 62.9
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 6.0e-15 85.5 71 66.2
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 6.0e-15 85.5 70 64.3
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 7.9e-15 85.1 71 66.2
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 7.9e-15 85.1 71 66.2
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.9e-15 85.1 58 79.3
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.0e-14 84.7 70 64.3
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.0e-14 84.7 70 64.3
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.3e-14 84.3 112 46.4
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.8e-14 84.0 70 62.9
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 2.3e-14 83.6 123 46.3
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 5.1e-14 82.4 89 51.7
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 5.1e-14 82.4 69 62.3
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 5.1e-14 82.4 71 63.4
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.1e-13 81.3 71 60.6
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 4.3e-13 79.3 71 59.2
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 4.3e-13 79.3 72 59.7
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 4.3e-13 79.3 70 60.0
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 1.3e-12 77.8 69 59.4
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 2.1e-12 77.0 70 57.1
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 2.1e-12 77.0 70 58.6
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 4.8e-12 75.9 70 58.6
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 6.2e-12 75.5 70 57.1
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 2.4e-11 73.6 52 69.2
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 2.0e-10 70.5 74 51.4
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 2.0e-10 70.5 71 57.7
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 2.6e-10 70.1 58 60.3
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 3.4e-10 69.7 75 50.7
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 5.8e-10 68.9 69 53.6
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.0e-09 68.2 74 50.0
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.3e-09 67.8 48 68.8
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.3e-09 67.8 82 50.0
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.5e-08 63.5 57 59.6
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.2e-08 62.8 69 52.2
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.2e-07 61.2 51 64.7
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 2.7e-07 60.1 46 65.2
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 7.9e-07 58.5 73 42.5
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.0e-06 58.2 73 50.7
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 2.3e-06 57.0 64 53.1
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 8.7e-06 55.1 89 40.4


User provided reference genes

Program Settings