Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0015300 Rhododendron simsii HOM05D007822 ORTHO05D009360 5.0e-237 823.9 385 100.0
Rhsim09G0189100 Rhododendron simsii HOM05D007822 ORTHO05D009360 3.7e-131 472.2 387 59.9
Dinv16858 Davidia involucrata HOM05D007822 ORTHO05D009360 1.1e-101 374.4 393 48.9
Rhsim01G0262200 Rhododendron simsii HOM05D007822 ORTHO05D009360 2.3e-96 356.7 386 47.2
RhsimUnG0026200 Rhododendron simsii HOM05D007822 ORTHO05D009360 3.7e-91 339.3 191 84.8
Prupe.2G273800 Prunus persica HOM05D007822 ORTHO05D009360 3.6e-70 269.6 396 40.2
Rhsim10G0180500 Rhododendron simsii HOM05D007822 ORTHO05D009360 2.4e-66 256.9 204 58.3
Ca_08383_v3 Cicer arietinum L. HOM05D007822 ORTHO05D009360 1.6e-65 254.2 391 38.9
Oeu042537.1 Olea europaea HOM05D007822 ORTHO05D009360 1.9e-63 247.3 392 36.5
Glyma.16G161700 Glycine max HOM05D007822 ORTHO05D009360 1.5e-60 237.7 389 36.5
Medtr3g084690 Medicago truncatula HOM05D007822 ORTHO05D009360 2.6e-60 236.9 384 37.8
Glyma.15G092300 Glycine max HOM05D007822 ORTHO05D009360 6.4e-59 232.3 392 35.2
Lalb_Chr07g0186991 Lupinus albus HOM05D007822 ORTHO05D009360 7.9e-57 225.3 383 36.8
Glyma.03G020200 Glycine max HOM05D007822 ORTHO05D009360 1.0e-56 224.9 389 37.5
TPR.G18087 Trifolium pratense HOM05D007822 ORTHO05D009360 1.5e-55 221.1 384 35.2
Medtr1g017120 Medicago truncatula HOM05D007822 ORTHO05D009360 3.7e-54 216.5 380 33.7
arahy.Tifrunner.gnm1.ann1.A760R9 Arachis hypogaea HOM05D007822 ORTHO05D009360 4.8e-54 216.1 393 35.9
TPR.G18082 Trifolium pratense HOM05D007822 ORTHO05D009360 4.8e-54 216.1 381 34.4
Medtr1g016400 Medicago truncatula HOM05D007822 ORTHO05D009360 1.1e-53 214.9 380 33.7
TPR.G34642 Trifolium pratense HOM05D007822 ORTHO05D009360 5.8e-52 209.1 401 34.4
Phvul.003G159000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 7.6e-52 208.8 393 35.1
Phvul.004G062200 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 7.6e-52 208.8 387 34.6
arahy.Tifrunner.gnm1.ann1.6X56G5 Arachis hypogaea HOM05D007822 ORTHO05D009360 6.5e-51 205.7 373 36.2
Phvul.001G265100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.6e-49 201.1 397 34.3
TPR.G33992 Trifolium pratense HOM05D007822 ORTHO05D009360 1.6e-49 201.1 378 32.8
Phvul.002G276000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 7.9e-49 198.7 387 33.9
arahy.Tifrunner.gnm1.ann1.HWH8LL Arachis hypogaea HOM05D007822 ORTHO05D009360 1.0e-48 198.4 395 33.9
Phvul.006G052100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.8e-48 197.6 390 34.4
TPR.G19769 Trifolium pratense HOM05D007822 ORTHO05D009360 1.8e-48 197.6 336 32.7
arahy.Tifrunner.gnm1.ann1.JJB16R Arachis hypogaea HOM05D007822 ORTHO05D009360 3.0e-48 196.8 389 35.5
arahy.Tifrunner.gnm1.ann1.N9Y9CH Arachis hypogaea HOM05D007822 ORTHO05D009360 1.1e-47 194.9 353 36.3
Sc09g0001460 Simmondsia chinensis HOM05D007822 ORTHO05D009360 1.6e-46 191.0 398 34.4
Phvul.001G264800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.8e-46 190.3 392 33.4
arahy.Tifrunner.gnm1.ann1.00A0K2 Arachis hypogaea HOM05D007822 ORTHO05D009360 2.0e-44 184.1 359 34.5
Phvul.001G264900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 5.9e-44 182.6 394 33.2
Sc09g0001470 Simmondsia chinensis HOM05D007822 ORTHO05D009360 1.0e-43 181.8 404 32.7
VMungo1215G0886 Vigna mungo HOM05D007822 ORTHO05D009360 2.2e-43 180.6 389 33.9
arahy.Tifrunner.gnm1.ann1.Z44N3D Arachis hypogaea HOM05D007822 ORTHO05D009360 8.5e-43 178.7 384 33.3
Phvul.006G051600 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.7e-41 173.7 360 33.9
Phvul.004G062300 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 7.9e-41 172.2 351 33.0
TPR.G34648 Trifolium pratense HOM05D007822 ORTHO05D009360 1.4e-40 171.4 313 32.9
arahy.Tifrunner.gnm1.ann1.2QW5CK Arachis hypogaea HOM05D007822 ORTHO05D009360 3.9e-40 169.9 394 33.5
Medtr2g450270 Medicago truncatula HOM05D007822 ORTHO05D009360 1.9e-39 167.5 391 30.2
arahy.Tifrunner.gnm1.ann1.30JHYY Arachis hypogaea HOM05D007822 ORTHO05D009360 5.7e-39 166.0 393 31.8
arahy.Tifrunner.gnm1.ann1.GB1I3E Arachis hypogaea HOM05D007822 ORTHO05D009360 1.3e-35 154.8 389 31.4
Lalb_Chr23g0273121 Lupinus albus HOM05D007822 ORTHO05D009360 4.7e-33 146.4 223 37.2
Psat2g094240 Pisum sativum HOM05D007822 ORTHO05D009360 7.4e-31 139.0 216 33.8
Phvul.006G051800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 9.7e-31 138.7 301 32.2
Phvul.006G051900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.3e-30 138.3 225 37.3
arahy.Tifrunner.gnm1.ann1.B28JH2 Arachis hypogaea HOM05D007822 ORTHO05D009360 6.3e-30 136.0 310 31.3
arahy.Tifrunner.gnm1.ann1.UXA4FW Arachis hypogaea HOM05D007822 ORTHO05D009360 7.7e-28 129.0 323 32.2
arahy.Tifrunner.gnm1.ann1.UHL69B Arachis hypogaea HOM05D007822 ORTHO05D009360 2.5e-26 124.0 256 31.6
DCAR_014640 Daucus carota HOM05D007822 ORTHO05D009360 3.2e-26 123.6 168 43.5
arahy.Tifrunner.gnm1.ann1.97QIN4 Arachis hypogaea HOM05D007822 ORTHO05D009360 8.0e-25 119.0 249 32.1
arahy.Tifrunner.gnm1.ann1.SE6DU5 Arachis hypogaea HOM05D007822 ORTHO05D009360 2.3e-24 117.5 235 31.5
arahy.Tifrunner.gnm1.ann1.IQQ1WH Arachis hypogaea HOM05D007822 ORTHO05D009360 2.6e-20 104.0 188 31.9
TPR.G33966 Trifolium pratense HOM05D007822 ORTHO05D009360 7.7e-20 102.4 124 37.9
arahy.Tifrunner.gnm1.ann1.LY7S5B Arachis hypogaea HOM05D007822 ORTHO05D009360 6.5e-19 99.4 305 27.9
Psat5g098960 Pisum sativum HOM05D007822 ORTHO05D009360 1.5e-18 98.2 128 41.4
Psat5g099000 Pisum sativum HOM05D007822 ORTHO05D009360 8.0e-17 92.4 124 38.7
TPR.G11880 Trifolium pratense HOM05D000005 ORTHO05D009360 1.0e-16 92.0 185 34.1
Medtr3g084660 Medicago truncatula HOM05D007822 ORTHO05D009360 2.3e-16 90.9 133 38.3
TPR.G19764 Trifolium pratense HOM05D007822 ORTHO05D009360 5.2e-16 89.7 116 44.0
VMungo1309G2027 Vigna mungo HOM05D007822 ORTHO05D009360 1.2e-15 88.6 262 28.6
TPR.G19772 Trifolium pratense HOM05D007822 ORTHO05D009360 5.7e-15 86.3 99 38.4
CiPaw.01G036300 Carya illinoinensis HOM05D002420 ORTHO05D002422 9.7e-15 85.5 193 29.0
Actinidia08199 Actinidia chinensis HOM05D007822 ORTHO05D009360 3.7e-14 83.6 66 54.5
TPR.G18088 Trifolium pratense HOM05D007822 ORTHO05D009360 1.8e-13 81.3 79 46.8
TPR.G24719 Trifolium pratense HOM05D007822 ORTHO05D009360 3.1e-13 80.5 129 36.4
CiPaw.01G036200 Carya illinoinensis HOM05D002420 ORTHO05D002422 9.1e-13 79.0 194 28.9
Lj8C5G0 Lonicera japonica HOM05D000007 ORTHO05D000521 2.0e-12 77.8 278 27.3
Gohir.D01G023577 Gossypium hirsutum HOM05D007162 ORTHO05D007631 1.0e-11 75.5 360 22.2
BcaB07g34165 Brassica carinata HOM05D007162 ORTHO05D007631 1.7e-11 74.7 315 23.2
Gorai.002G031500 Gossypium raimondii HOM05D007162 ORTHO05D007631 1.7e-11 74.7 360 22.2
HanXRQChr14g0441221 Helianthus annuus HOM05D002420 ORTHO05D002422 3.8e-11 73.6 185 30.3
AUR62032769 Chenopodium quinoa HOM05D007162 ORTHO05D007631 5.0e-11 73.2 348 24.1
AUR62016246 Chenopodium quinoa HOM05D007162 ORTHO05D007631 6.5e-11 72.8 356 23.0
Sed0001582 Sechium edule HOM05D002420 ORTHO05D002422 6.5e-11 72.8 134 34.3
Gohir.A01G035600 Gossypium hirsutum HOM05D007162 ORTHO05D007631 1.1e-10 72.0 348 22.7
THA.LOC104818869 Tarenaya hassleriana HOM05D007162 ORTHO05D007631 1.1e-10 72.0 344 21.8
QL06p045688 Quercus lobata HOM05D002420 ORTHO05D002422 1.9e-10 71.2 181 28.7
CAN.G358.109 Capsicum annuum HOM05D002420 ORTHO05D002422 3.2e-10 70.5 243 23.9
Cfa004296 Carpinus fangiana HOM05D002420 ORTHO05D002422 3.2e-10 70.5 193 26.9
TAR628G0483 Trochodendron aralioides HOM05D002420 ORTHO05D002422 3.2e-10 70.5 236 25.0
Haze_15106 Corylus avellana HOM05D002420 ORTHO05D002422 5.5e-10 69.7 193 26.4
Hma1.2p1_0516F.1_g170520 Hydrangea macrophylla HOM05D007162 ORTHO05D007631 5.5e-10 69.7 383 22.5
Peaxi162Scf00515g00043 Petunia axillaris HOM05D002420 ORTHO05D002422 9.4e-10 68.9 193 25.4
Gorai.008G068500 Gossypium raimondii HOM05D002420 ORTHO05D002422 1.2e-09 68.6 183 26.8
Lj2P450T13 Lonicera japonica HOM05D002420 ORTHO05D002422 1.2e-09 68.6 307 21.2
COL.COLO4_22098 Corchorus olitorius HOM05D002420 ORTHO05D002422 1.6e-09 68.2 188 26.1
Gohir.D10G181300 Gossypium hirsutum HOM05D007162 ORTHO05D007631 1.6e-09 68.2 344 21.8
Gorai.011G202800 Gossypium raimondii HOM05D007162 ORTHO05D007631 1.6e-09 68.2 344 21.8
Oeu007441.1 Olea europaea HOM05D002420 ORTHO05D002422 1.6e-09 68.2 185 28.1
Gohir.D12G065250 Gossypium hirsutum HOM05D002420 ORTHO05D002422 2.1e-09 67.8 183 25.7
Hma1.2p1_0013F.1_g008260 Hydrangea macrophylla HOM05D007162 ORTHO05D007631 2.7e-09 67.4 382 22.3
Nn4g25520 Nelumbo nucifera HOM05D007162 ORTHO05D007631 2.7e-09 67.4 389 21.3
Thhalv10004464m.g Eutrema salsugineum HOM05D007162 ORTHO05D007631 3.6e-09 67.0 351 20.8
Manes.03G207900 Manihot esculenta HOM05D007162 ORTHO05D007631 3.6e-09 67.0 344 21.8
Thecc.01G037700 Theobroma cacao HOM05D002420 ORTHO05D002422 3.6e-09 67.0 188 25.5
Duzib147G0753 Durio zibethinus HOM05D002420 ORTHO05D002422 6.1e-09 66.2 192 25.0
Gohir.A10G174800 Gossypium hirsutum HOM05D007162 ORTHO05D007631 6.1e-09 66.2 344 21.2
Sp2g19920 Schrenkiella parvula HOM05D007162 ORTHO05D007631 6.1e-09 66.2 356 21.3
CSS0029544 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 1.0e-08 65.5 192 25.0
Lj3P834T54 Lonicera japonica HOM05D007162 ORTHO05D007631 1.0e-08 65.5 345 22.0
BcaC03g17742 Brassica carinata HOM05D007162 ORTHO05D007631 1.4e-08 65.1 352 21.3
C02p57550 Brassica napus HOM05D007162 ORTHO05D007631 1.4e-08 65.1 352 21.3
Carub.0008s0947 Capsella rubella HOM05D007162 ORTHO05D007631 1.4e-08 65.1 352 20.2
SGA_v2.0_scaffold34G13656 Striga asiatica HOM05D002420 ORTHO05D002422 1.4e-08 65.1 131 33.6
TPR.G5267 Trifolium pratense HOM05D007822 ORTHO05D009360 1.4e-08 65.1 95 35.8
Lj1A662G33 Lonicera japonica HOM05D000007 ORTHO05D000039 1.8e-08 64.7 385 22.9
Sopen02g030130 Solanum pennellii HOM05D002420 ORTHO05D002422 1.8e-08 64.7 192 25.0
Duzib187G1349 Durio zibethinus HOM05D002420 ORTHO05D002422 2.3e-08 64.3 130 29.2
Oeu054758.1 Olea europaea HOM05D002420 ORTHO05D002422 2.3e-08 64.3 183 26.2
A02p38240 Brassica napus HOM05D007162 ORTHO05D007631 3.0e-08 63.9 352 21.6
Cc07_g09370 Coffea canephora HOM05D002420 ORTHO05D002422 3.0e-08 63.9 192 24.0
HanXRQChr02g0054011 Helianthus annuus HOM05D002420 ORTHO05D002422 3.0e-08 63.9 192 22.4
CAN.G929.25 Capsicum annuum HOM05D002420 ORTHO05D002422 4.0e-08 63.5 301 23.9
Ciclev10005014m.g Citrus clementina HOM05D007162 ORTHO05D007631 4.0e-08 63.5 126 32.5
arahy.Tifrunner.gnm1.ann1.WW5NKJ Arachis hypogaea HOM05D007822 ORTHO05D009360 5.2e-08 63.2 72 47.2
DCAR_015928 Daucus carota HOM05D002420 ORTHO05D002422 5.2e-08 63.2 192 24.0
Eucgr.B03982 Eucalyptus grandis HOM05D007162 ORTHO05D007631 5.2e-08 63.2 353 22.1
Prupe.7G153000 Prunus persica HOM05D002420 ORTHO05D002422 5.2e-08 63.2 145 29.0
BolC2t11828H Brassica oleracea HOM05D007162 ORTHO05D007631 8.8e-08 62.4 352 21.0
EL10Ac3g05554 Beta vulgaris HOM05D007162 ORTHO05D007631 1.2e-07 62.0 343 21.6
Ciclev10020526m.g Citrus clementina HOM05D002420 ORTHO05D002422 1.2e-07 62.0 190 28.4
COL.COLO4_23193 Corchorus olitorius HOM05D000007 ORTHO05D000521 1.2e-07 62.0 146 29.5
DCAR_021443 Daucus carota HOM05D002420 ORTHO05D002422 1.2e-07 62.0 185 24.9
PSO063G5348 Papaver somniferum HOM05D002420 ORTHO05D002422 1.2e-07 62.0 302 22.8
SGA_v2.0_scaffold157G37347 Striga asiatica HOM05D007162 ORTHO05D007631 1.2e-07 62.0 151 29.8
Sabra10G0115000 Salix brachista HOM05D007162 ORTHO05D007631 1.5e-07 61.6 126 29.4
CAN.G53.20 Capsicum annuum HOM05D002420 ORTHO05D002422 2.0e-07 61.2 130 26.9
Duzib168G0815 Durio zibethinus HOM05D002420 ORTHO05D002422 4.4e-07 60.1 136 28.7
CAN.G358.108 Capsicum annuum HOM05D002420 ORTHO05D002422 5.7e-07 59.7 130 29.2
COL.COLO4_13967 Corchorus olitorius HOM05D000007 ORTHO05D000521 5.7e-07 59.7 147 28.6
Haze_00858 Corylus avellana HOM05D007162 ORTHO05D007631 5.7e-07 59.7 126 31.0
Migut.H02492 Erythranthe guttata HOM05D002420 ORTHO05D002422 5.7e-07 59.7 123 30.9
Gohir.A11G185100 Gossypium hirsutum HOM05D002420 ORTHO05D002422 5.7e-07 59.7 129 27.9
Potri.010G149000 Populus trichocarpa HOM05D007162 ORTHO05D007631 5.7e-07 59.7 126 29.4
SalBow8G4721 Salvia bowleyana HOM05D007162 ORTHO05D007631 5.7e-07 59.7 151 29.1
Migut.D01077 Erythranthe guttata HOM05D000007 ORTHO05D000017 7.5e-07 59.3 389 23.9
HanXRQChr01g0029461 Helianthus annuus HOM05D008898 ORTHO05D001155 7.5e-07 59.3 328 24.4
PGSC0003DMG400014891 Solanum tuberosum HOM05D002420 ORTHO05D002422 7.5e-07 59.3 130 28.5
AUR62003167 Chenopodium quinoa HOM05D002420 ORTHO05D002422 9.8e-07 58.9 140 27.1
RcHm_v2.0_Chr4g0426111 Rosa chinensis HOM05D007162 ORTHO05D007631 9.8e-07 58.9 151 29.1
CANSAT01G0893 Cannabis sativa HOM05D002420 ORTHO05D002422 1.3e-06 58.5 132 25.8
Aa31LG11G8430 Aethionema arabicum HOM05D007162 ORTHO05D007631 1.7e-06 58.2 131 31.3
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.7e-06 58.2 140 27.9
Ca_00957_v3 Cicer arietinum L. HOM05D007162 ORTHO05D007631 1.7e-06 58.2 126 31.0
PGSC0003DMG400015473 Solanum tuberosum HOM05D002420 ORTHO05D002422 1.7e-06 58.2 130 25.4
TAR381G1454 Trochodendron aralioides HOM05D000007 ORTHO05D000521 1.7e-06 58.2 131 33.6
Gorai.007G204200 Gossypium raimondii HOM05D002420 ORTHO05D002422 2.2e-06 57.8 129 27.1
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 2.2e-06 57.8 126 29.4
CAN.G134.123 Capsicum annuum HOM05D002420 ORTHO05D002422 2.8e-06 57.4 130 28.5
PSO675G5470 Papaver somniferum HOM05D000007 ORTHO05D000676 2.8e-06 57.4 158 29.7
Phvul.006G120400 Phaseolus vulgaris HOM05D007162 ORTHO05D007631 2.8e-06 57.4 126 28.6
vmacro07965 Vaccinium macrocarpon HOM05D007162 ORTHO05D007631 2.8e-06 57.4 132 32.6
VMungo0540G1379 Vigna mungo HOM05D007162 ORTHO05D007631 2.8e-06 57.4 126 28.6
CSS0000127 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 3.7e-06 57.0 126 31.0
CSS0043507 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 3.7e-06 57.0 126 31.0
MD02G1150100 Malus domestica HOM05D002420 ORTHO05D002422 3.7e-06 57.0 185 23.8
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 3.7e-06 57.0 82 41.5
PGR031G2441 Punica granatum HOM05D007162 ORTHO05D007631 3.7e-06 57.0 126 29.4
AT5G49610 Arabidopsis thaliana HOM05D007162 ORTHO05D007631 4.8e-06 56.6 126 31.0
TAR375G1044 Trochodendron aralioides HOM05D007822 ORTHO05D009360 4.8e-06 56.6 76 43.4
CiPaw.01G134400 Carya illinoinensis HOM05D007162 ORTHO05D007631 6.3e-06 56.2 126 29.4
Gohir.D11G191566 Gossypium hirsutum HOM05D002420 ORTHO05D002422 6.3e-06 56.2 129 26.4
QL06p013113 Quercus lobata HOM05D007162 ORTHO05D007631 6.3e-06 56.2 126 30.2
Migut.G00030 Erythranthe guttata HOM05D007162 ORTHO05D007631 8.3e-06 55.8 126 30.2
Lsat_1_v5_gn_4_150760 Lactuca sativa HOM05D002420 ORTHO05D002422 8.3e-06 55.8 192 24.0
Manes.03G115800 Manihot esculenta HOM05D000007 ORTHO05D000039 8.3e-06 55.8 134 28.4


User provided reference genes

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