Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.9e-243 844.3 414 100.0
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.9e-226 788.9 416 93.5
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 6.8e-224 780.4 416 92.8
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 1.3e-174 616.7 417 71.2
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 3.7e-161 572.0 381 71.7
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 1.0e-155 553.9 413 66.3
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 1.8e-147 526.6 421 60.6
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 1.5e-146 523.5 395 63.0
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 5.7e-146 521.5 412 61.9
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 1.7e-145 520.0 418 60.3
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.1e-144 517.3 412 62.4
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.2e-143 513.8 422 60.0
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.8e-142 508.8 412 61.4
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 4.2e-141 505.4 412 61.4
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.1e-140 503.1 412 61.2
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 4.7e-140 501.9 399 60.4
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 8.0e-140 501.1 423 57.4
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 4.4e-138 495.4 423 58.6
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 5.7e-138 495.0 425 59.5
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.3e-137 493.8 412 60.4
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 4.9e-137 491.9 423 57.7
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-136 490.3 419 58.5
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 3.1e-136 489.2 420 57.4
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 7.0e-136 488.0 414 58.7
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 9.2e-136 487.6 416 58.2
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 2.7e-135 486.1 426 58.7
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 4.5e-135 485.3 420 57.1
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 5.9e-135 485.0 420 56.4
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 1.3e-134 483.8 380 63.4
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 8.6e-134 481.1 413 57.9
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 8.6e-134 481.1 416 57.0
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 4.3e-133 478.8 424 56.1
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 4.3e-133 478.8 420 56.4
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 5.6e-133 478.4 425 55.5
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 9.5e-133 477.6 415 57.6
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 2.8e-132 476.1 422 55.7
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 4.7e-132 475.3 413 57.4
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.1e-132 474.9 403 58.6
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.0e-131 474.2 404 56.7
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.8e-131 473.4 413 57.4
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 2.3e-131 473.0 424 55.9
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 3.0e-131 472.6 413 57.1
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 4.0e-131 472.2 424 56.1
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 5.2e-131 471.9 413 55.9
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 1.2e-130 470.7 423 56.3
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 2.0e-130 469.9 394 59.4
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 7.5e-130 468.0 416 56.7
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 2.9e-129 466.1 423 54.6
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 2.3e-126 456.4 365 61.4
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.9e-125 453.4 382 59.2
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 1.6e-124 450.3 426 53.8
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 8.9e-123 444.5 424 53.3
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 1.3e-121 440.7 395 55.4
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 3.7e-121 439.1 418 52.9
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 7.0e-120 434.9 391 53.7
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 3.5e-119 432.6 388 57.2
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 2.3e-118 429.9 419 51.6
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 2.3e-118 429.9 399 53.1
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 8.6e-118 427.9 409 53.3
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 2.5e-117 426.4 425 51.1
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 5.6e-117 425.2 420 50.7
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 9.5e-117 424.5 377 55.2
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 2.8e-116 422.9 389 53.7
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 6.2e-116 421.8 422 53.1
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 1.4e-115 420.6 435 51.5
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 1.5e-114 417.2 427 50.8
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 5.8e-114 415.2 396 53.8
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 2.9e-113 412.9 396 53.0
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 4.9e-113 412.1 420 49.3
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 1.1e-112 411.0 427 50.4
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.9e-112 410.2 392 53.8
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 5.4e-112 408.7 429 50.1
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 3.5e-111 406.0 390 53.3
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 4.6e-111 405.6 389 53.7
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 6.0e-111 405.2 390 53.1
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.3e-110 404.1 404 51.5
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 3.0e-110 402.9 386 51.3
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 5.1e-110 402.1 388 53.1
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 6.6e-110 401.7 398 50.8
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 8.6e-110 401.4 388 53.1
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 3.3e-109 399.4 392 52.0
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 7.3e-109 398.3 389 51.7
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 1.2e-108 397.5 390 52.3
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 3.4e-106 389.4 381 52.5
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 5.8e-106 388.7 377 53.1
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 5.8e-106 388.7 392 51.3
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 7.6e-106 388.3 382 51.8
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 2.2e-105 386.7 379 52.2
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 6.4e-105 385.2 379 52.0
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 6.4e-105 385.2 417 51.6
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 4.1e-104 382.5 379 51.7
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 3.5e-103 379.4 373 52.0
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 4.6e-103 379.0 412 47.6
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.3e-102 377.5 374 52.1
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 3.3e-101 372.9 375 50.4
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 2.8e-100 369.8 373 51.2
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.4e-99 366.7 370 51.1
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 8.9e-99 364.8 362 52.2
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.3e-96 354.8 317 56.2
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 8.7e-94 348.2 287 60.3
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 2.1e-92 343.6 301 55.1
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.3e-89 334.3 393 47.1
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 1.6e-84 317.4 409 44.7
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.4e-82 309.7 286 54.9
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 4.8e-76 289.3 257 54.9
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 4.5e-74 282.7 300 46.3
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 5.8e-74 282.3 284 49.3
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 1.7e-73 280.8 223 58.7
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 6.7e-70 268.9 208 62.0
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 1.6e-68 264.2 171 73.1
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 2.1e-68 263.8 314 44.3
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 1.8e-67 260.8 193 60.1
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 3.1e-67 260.0 411 39.2
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.5e-66 257.7 248 53.6
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 2.6e-66 256.9 266 51.1
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-61 241.1 171 66.1
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 3.4e-58 229.9 385 34.0
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 1.1e-53 214.9 175 57.7
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 2.8e-52 210.3 209 53.6
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 2.9e-49 200.3 194 52.6
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.7e-47 193.0 314 38.2
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.7e-46 189.1 136 62.5
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 6.7e-46 189.1 223 47.1
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 3.3e-45 186.8 256 40.2
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 4.4e-45 186.4 414 30.0
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.3e-41 174.9 419 29.4
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-40 171.4 270 38.1
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 1.3e-36 158.3 193 47.7
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 9.1e-35 152.1 175 47.4
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-33 147.5 110 62.7
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.5e-32 144.1 111 62.2
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 3.4e-29 133.7 103 57.3
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.3e-28 129.0 105 58.1
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.1e-23 112.8 110 50.9
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.8e-22 109.0 110 50.9
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 3.1e-19 100.5 83 55.4
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.3e-12 75.9 85 47.1
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 2.4e-11 74.3 52 65.4
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 5.9e-10 69.7 82 37.8
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 5.9e-10 69.7 89 43.8
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.6e-09 66.2 63 52.4
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 2.1e-07 61.2 70 41.4


User provided reference genes

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