Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 3.6e-175 618.2 332 100.0
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.9e-148 528.9 332 84.6
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.9e-148 528.1 332 84.6
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 5.6e-144 514.6 368 76.6
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.7e-140 503.1 332 78.9
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.3e-136 488.4 332 75.3
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 2.1e-130 469.5 295 76.3
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.0e-129 467.2 334 69.2
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 1.1e-128 463.8 340 72.9
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 2.5e-128 462.6 335 67.5
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 9.6e-128 460.7 332 69.6
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.3e-127 460.3 299 73.2
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 1.6e-127 459.9 335 72.5
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.6e-127 459.9 335 69.9
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 1.1e-126 457.2 291 74.2
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.1e-126 457.2 292 74.3
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.1e-126 455.7 333 69.7
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 4.0e-126 455.3 292 74.0
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.2e-125 453.8 298 72.8
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 1.5e-125 453.4 327 71.6
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 2.6e-125 452.6 292 75.3
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 7.6e-125 451.1 292 74.0
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.2e-124 449.5 298 72.8
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 3.8e-124 448.7 292 74.0
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 4.9e-124 448.4 293 73.0
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.1e-123 447.2 294 71.1
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.4e-123 446.8 333 69.1
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.2e-123 445.7 292 71.9
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 9.3e-123 444.1 293 71.3
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 4.6e-122 441.8 294 73.1
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.3e-121 440.3 294 69.4
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.3e-121 439.5 292 71.9
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 3.9e-121 438.7 293 73.0
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 5.1e-121 438.3 300 69.3
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 1.1e-120 437.2 296 71.3
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.5e-120 436.0 291 70.4
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.5e-120 436.0 292 71.6
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.3e-120 435.6 297 70.0
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 7.4e-120 434.5 291 70.1
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.3e-119 433.7 292 70.2
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 1.3e-119 433.7 290 71.4
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.1e-119 433.0 292 70.2
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.1e-119 433.0 294 70.4
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 2.8e-119 432.6 330 64.2
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 2.8e-119 432.6 330 64.2
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 6.2e-119 431.4 292 68.8
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 8.2e-119 431.0 315 66.7
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 1.1e-118 430.6 296 69.3
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 3.1e-118 429.1 293 68.3
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 4.0e-118 428.7 302 68.9
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 5.3e-118 428.3 293 67.9
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 1.2e-117 427.2 294 69.0
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.0e-117 426.4 292 69.2
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 2.6e-117 426.0 298 68.8
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 2.6e-117 426.0 293 70.3
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.4e-117 425.6 293 70.0
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.5e-117 425.2 294 69.7
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 5.8e-117 424.9 293 67.6
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 5.8e-117 424.9 293 70.0
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.7e-116 423.3 290 71.0
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.9e-116 422.5 292 68.2
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 3.8e-116 422.2 295 69.2
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 4.9e-116 421.8 292 68.2
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 4.9e-116 421.8 292 68.2
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 4.9e-116 421.8 292 67.8
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 8.4e-116 421.0 292 68.2
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 2.5e-115 419.5 298 66.8
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.2e-115 419.1 292 68.5
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.0e-113 414.1 295 67.8
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 1.3e-113 413.7 287 69.3
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 3.0e-113 412.5 332 63.6
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 6.7e-113 411.4 332 62.3
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 2.2e-111 406.4 335 61.8
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.8e-110 403.3 293 64.2
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.8e-110 403.3 293 64.2
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.1e-110 402.5 343 57.7
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 4.1e-110 402.1 269 71.4
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 9.0e-110 401.0 293 63.8
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.5e-109 400.2 297 66.3
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.0e-109 399.8 294 67.0
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 2.6e-109 399.4 331 63.7
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 2.6e-109 399.4 294 66.7
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 2.6e-109 399.4 354 56.2
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 5.9e-109 398.3 294 65.6
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.0e-108 397.5 293 67.6
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.7e-108 396.7 294 65.3
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 6.5e-108 394.8 294 65.0
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 6.5e-108 394.8 294 65.0
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 8.5e-108 394.4 296 64.5
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 8.5e-108 394.4 296 64.5
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.2e-107 391.3 296 64.2
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.6e-106 390.2 292 64.0
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 2.1e-106 389.8 297 64.6
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 2.1e-106 389.8 299 63.2
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 2.7e-106 389.4 298 64.1
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 4.6e-106 388.7 308 62.7
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 6.1e-106 388.3 296 64.9
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.1e-106 388.3 292 65.8
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 6.1e-106 388.3 297 65.0
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 7.9e-106 387.9 294 62.9
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 1.3e-105 387.1 296 64.5
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.3e-104 382.1 297 63.6
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 7.4e-104 381.3 340 57.9
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 2.8e-103 379.4 295 62.4
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 4.1e-102 375.6 294 61.6
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 6.9e-102 374.8 301 64.8
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.2e-101 374.0 296 60.5
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 5.9e-101 371.7 258 77.1
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 5.0e-100 368.6 339 59.3
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 5.5e-99 365.2 257 65.0
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 5.5e-99 365.2 335 55.5
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 8.2e-95 351.3 291 58.8
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.3e-92 344.0 292 58.6
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.0e-88 330.1 305 52.8
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 4.4e-88 328.9 293 57.0
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 6.3e-87 325.1 286 55.2
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.7e-84 317.0 272 58.8
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.0e-80 303.5 291 54.6
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.6e-80 303.1 250 58.0
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-74 284.3 348 51.4
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 8.0e-74 281.6 265 54.7
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.2e-72 277.7 287 46.3
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 4.1e-70 269.2 344 42.2
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 4.5e-69 265.8 287 45.3
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.4e-65 254.2 288 42.4
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.8e-65 253.8 196 62.8
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 9.8e-64 248.1 294 43.9
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 8.3e-63 245.0 159 73.0
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 7.8e-61 238.4 169 68.0
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.3e-60 237.7 268 46.6
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.3e-60 237.7 198 60.6
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.4e-54 217.6 241 48.5
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.6e-37 161.0 278 32.4
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.5e-37 159.8 119 61.3
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 1.1e-35 154.8 114 66.7
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.5e-32 144.4 99 71.7
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 5.4e-30 136.0 84 73.8
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 5.1e-28 129.4 99 60.6
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 8.1e-26 122.1 92 62.0
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 8.1e-26 122.1 92 62.0
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.2e-24 118.2 119 52.1
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 2.9e-23 113.6 92 57.6
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.4e-22 110.5 87 58.6
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 1.0e-20 105.1 77 62.3
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.3e-20 104.8 73 67.1
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.7e-20 104.4 174 36.8
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.7e-20 102.1 68 69.1
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.1e-18 95.5 140 42.9
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 4.0e-17 93.2 76 59.2
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 4.9e-15 86.3 58 67.2
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-14 85.1 54 74.1
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 9.6e-11 72.0 57 54.4
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.3e-10 71.6 47 68.1
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.1e-10 70.9 89 47.2
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 3.1e-09 67.0 91 36.3
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 6.9e-09 65.9 51 60.8


User provided reference genes

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