Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 3.7e-102 374.8 179 100.0
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 9.2e-93 343.6 212 81.1
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 5.6e-90 334.3 172 87.2
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.4e-88 329.7 176 86.4
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 9.9e-87 323.6 240 68.3
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.7e-86 322.8 176 84.1
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 4.9e-86 321.2 173 86.1
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 8.4e-86 320.5 163 90.8
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 7.1e-85 317.4 175 82.3
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 2.7e-84 315.5 171 82.5
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 1.3e-83 313.2 174 81.0
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.5e-82 309.7 175 82.3
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 3.3e-82 308.5 167 83.8
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 4.3e-82 308.1 175 78.3
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 4.3e-82 308.1 176 80.7
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 5.6e-82 307.8 177 80.2
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 7.3e-82 307.4 172 80.2
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 7.3e-82 307.4 175 80.0
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 7.3e-82 307.4 175 78.9
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 9.6e-82 307.0 175 79.4
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 1.6e-81 306.2 175 79.4
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 2.8e-81 305.4 175 78.9
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 3.6e-81 305.1 173 79.8
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 3.6e-81 305.1 169 81.7
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 3.6e-81 305.1 167 81.4
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 4.8e-81 304.7 175 79.4
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 6.2e-81 304.3 173 79.8
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 8.1e-81 303.9 175 79.4
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 8.1e-81 303.9 168 80.4
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.1e-80 303.5 167 82.6
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.4e-80 303.1 175 76.6
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.8e-80 302.8 175 78.9
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.8e-80 302.8 170 80.6
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 2.4e-80 302.4 170 77.6
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 2.4e-80 302.4 175 76.6
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 3.1e-80 302.0 180 75.6
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 4.0e-80 301.6 174 75.3
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 6.9e-80 300.8 173 78.6
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 6.9e-80 300.8 175 77.1
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 6.9e-80 300.8 175 77.7
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 6.9e-80 300.8 178 77.5
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 6.9e-80 300.8 175 76.0
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 9.0e-80 300.4 174 78.7
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 9.0e-80 300.4 168 79.2
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 1.2e-79 300.1 180 76.1
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 1.5e-79 299.7 167 81.4
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 1.5e-79 299.7 173 78.6
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.5e-79 299.7 172 77.3
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 3.4e-79 298.5 175 77.1
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 4.4e-79 298.1 169 78.1
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 4.4e-79 298.1 169 78.1
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 5.8e-79 297.7 169 80.5
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 7.6e-79 297.4 177 77.4
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 7.6e-79 297.4 180 76.7
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 1.3e-78 296.6 166 78.3
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 1.7e-78 296.2 172 77.9
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 2.9e-78 295.4 170 75.9
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 3.8e-78 295.0 173 76.3
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 3.8e-78 295.0 173 76.9
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 8.4e-78 293.9 166 79.5
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 8.4e-78 293.9 166 79.5
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 1.4e-77 293.1 188 74.5
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 1.9e-77 292.7 169 76.9
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 1.9e-77 292.7 173 75.1
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 1.9e-77 292.7 173 76.3
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 3.2e-77 292.0 171 75.4
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.2e-77 292.0 171 75.4
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 5.4e-77 291.2 168 77.4
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 7.1e-77 290.8 168 78.0
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 7.1e-77 290.8 177 73.4
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 9.3e-77 290.4 173 72.3
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.2e-76 290.0 175 74.9
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.2e-76 290.0 168 76.8
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 1.6e-76 289.7 175 75.4
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 1.6e-76 289.7 166 77.1
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 1.6e-76 289.7 168 77.4
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 2.1e-76 289.3 173 74.0
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 2.1e-76 289.3 173 76.3
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 2.1e-76 289.3 173 75.1
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 6.0e-76 287.7 166 78.3
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 7.8e-76 287.3 174 74.7
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.8e-76 287.3 168 76.2
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.0e-75 287.0 178 71.9
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 1.0e-75 287.0 168 75.6
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 1.0e-75 287.0 168 76.2
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 1.7e-75 286.2 168 74.4
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.7e-75 286.2 178 71.9
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 2.3e-75 285.8 166 75.3
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 2.3e-75 285.8 166 76.5
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 5.1e-75 284.6 172 75.0
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 5.1e-75 284.6 174 73.6
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 6.6e-75 284.3 168 74.4
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 1.1e-74 283.5 177 71.8
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.5e-74 283.1 174 73.0
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.5e-74 283.1 178 74.2
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 4.3e-74 281.6 174 71.8
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 4.3e-74 281.6 168 73.8
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 7.3e-74 280.8 177 72.3
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 7.3e-74 280.8 154 83.8
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 9.6e-74 280.4 174 72.4
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 9.6e-74 280.4 175 70.9
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 2.1e-73 279.3 178 71.3
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 2.8e-73 278.9 168 73.8
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 3.6e-73 278.5 173 71.1
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 4.8e-73 278.1 172 72.7
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 4.8e-73 278.1 165 75.8
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 6.2e-73 277.7 162 75.9
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.8e-72 276.2 177 69.5
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 2.4e-72 275.8 166 78.3
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 2.4e-72 275.8 164 74.4
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 4.0e-72 275.0 175 69.1
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 4.0e-72 275.0 175 70.9
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 5.3e-72 274.6 174 71.8
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 6.9e-72 274.2 168 70.2
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 9.0e-72 273.9 175 72.0
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 9.0e-72 273.9 175 72.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 5.8e-71 271.2 164 76.2
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.7e-70 269.6 164 75.6
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.7e-70 269.6 177 68.9
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 1.4e-69 266.5 175 68.0
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 1.9e-69 266.2 174 68.4
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.6e-68 263.1 176 73.9
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.8e-67 259.6 164 72.0
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 1.1e-66 256.9 178 65.2
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.3e-65 253.4 181 64.6
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.8e-65 252.3 159 73.6
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 2.8e-65 252.3 168 66.1
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 4.0e-64 248.4 175 64.0
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 1.0e-62 243.8 169 67.5
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 1.0e-62 243.8 169 65.7
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 4.6e-60 235.0 166 62.7
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.8e-59 233.0 167 62.9
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 8.2e-57 224.2 164 60.4
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 2.4e-56 222.6 168 59.5
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 3.9e-51 205.3 114 80.7
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 3.3e-50 202.2 170 52.4
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 2.2e-49 199.5 102 89.2
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 3.7e-49 198.7 116 80.2
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 9.0e-48 194.1 111 75.7
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 7.7e-47 191.0 122 70.5
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 2.5e-45 186.0 106 79.2
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 1.4e-43 180.3 174 48.9
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 8.8e-43 177.6 101 77.2
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 7.4e-42 174.5 115 67.8
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 1.3e-41 173.7 166 51.2
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 2.2e-41 172.9 101 76.2
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.1e-40 170.6 104 75.0
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 5.3e-40 168.3 176 53.4
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 3.4e-39 165.6 108 69.4
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 3.4e-39 165.6 108 69.4
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 7.2e-37 157.9 85 84.7
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 2.4e-32 142.9 173 46.2
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 2.1e-28 129.8 79 73.4
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 1.8e-27 126.7 162 37.0
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 8.8e-27 124.4 144 50.0
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 2.6e-26 122.9 123 52.8
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.1e-24 115.5 63 81.0
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.8e-19 100.1 68 67.6
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 1.4e-16 90.5 186 28.5
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 9.1e-16 87.8 67 55.2
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 5.9e-15 85.1 67 55.2
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.9e-14 82.8 68 55.9
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 5.0e-14 82.0 79 46.8
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 4.0e-11 72.4 35 88.6
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 2.2e-09 66.6 48 68.8


User provided reference genes

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