Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 2.1e-52 208.8 104 100.0
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 5.5e-29 131.0 61 98.4
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 2.7e-28 128.6 61 96.7
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 3.5e-28 128.3 61 96.7
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 7.9e-28 127.1 61 95.1
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 7.9e-28 127.1 62 93.5
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 7.9e-28 127.1 62 93.5
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.0e-27 126.7 61 95.1
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.0e-27 126.7 61 95.1
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 1.0e-27 126.7 62 90.3
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.3e-27 126.3 62 90.3
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 3.9e-27 124.8 62 90.3
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 3.9e-27 124.8 61 91.8
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 3.9e-27 124.8 62 88.7
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 3.9e-27 124.8 61 90.2
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 3.9e-27 124.8 61 90.2
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 3.9e-27 124.8 61 90.2
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 3.9e-27 124.8 62 88.7
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 5.1e-27 124.4 61 90.2
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 5.1e-27 124.4 84 70.2
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 6.7e-27 124.0 61 90.2
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 6.7e-27 124.0 62 87.1
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 6.7e-27 124.0 61 88.5
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 6.7e-27 124.0 61 88.5
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 8.7e-27 123.6 61 88.5
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 8.7e-27 123.6 61 91.8
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 8.7e-27 123.6 61 88.5
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 8.7e-27 123.6 61 88.5
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 8.7e-27 123.6 61 91.8
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 8.7e-27 123.6 61 90.2
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 1.1e-26 123.2 62 87.1
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 1.1e-26 123.2 62 87.1
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 1.1e-26 123.2 61 90.2
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.1e-26 123.2 61 88.5
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 1.1e-26 123.2 61 90.2
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 1.1e-26 123.2 61 90.2
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 1.5e-26 122.9 62 87.1
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 1.5e-26 122.9 61 86.9
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.5e-26 122.9 62 87.1
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.5e-26 122.9 64 82.8
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 1.5e-26 122.9 61 88.5
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 1.5e-26 122.9 61 88.5
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 1.5e-26 122.9 61 88.5
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 1.5e-26 122.9 74 78.4
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 1.5e-26 122.9 61 88.5
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 1.5e-26 122.9 61 86.9
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.5e-26 122.9 61 86.9
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 1.5e-26 122.9 61 88.5
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 1.9e-26 122.5 62 87.1
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 1.9e-26 122.5 62 87.1
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.9e-26 122.5 61 88.5
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.9e-26 122.5 62 85.5
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.9e-26 122.5 61 88.5
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.9e-26 122.5 61 86.9
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 2.5e-26 122.1 61 90.2
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 2.5e-26 122.1 64 84.4
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 3.3e-26 121.7 66 80.3
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 3.3e-26 121.7 97 60.8
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 3.3e-26 121.7 62 87.1
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 3.3e-26 121.7 61 85.2
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 4.3e-26 121.3 62 87.1
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 4.3e-26 121.3 62 85.5
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 4.3e-26 121.3 62 85.5
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 4.3e-26 121.3 62 85.5
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 4.3e-26 121.3 62 85.5
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 4.3e-26 121.3 62 85.5
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 4.3e-26 121.3 62 85.5
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 4.3e-26 121.3 61 86.9
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 4.3e-26 121.3 61 86.9
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 4.3e-26 121.3 70 78.6
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 4.3e-26 121.3 61 86.9
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 5.7e-26 120.9 61 88.5
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 5.7e-26 120.9 61 86.9
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 5.7e-26 120.9 61 86.9
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 5.7e-26 120.9 61 88.5
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 7.4e-26 120.6 61 86.9
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 7.4e-26 120.6 61 86.9
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 7.4e-26 120.6 62 83.9
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 9.6e-26 120.2 63 85.7
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 9.6e-26 120.2 61 86.9
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 9.6e-26 120.2 62 83.9
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 9.6e-26 120.2 61 86.9
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 1.3e-25 119.8 62 87.1
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 1.3e-25 119.8 62 87.1
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 1.3e-25 119.8 62 87.1
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 1.3e-25 119.8 61 85.2
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 1.3e-25 119.8 61 88.5
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 1.3e-25 119.8 61 86.9
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 1.6e-25 119.4 61 86.9
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 1.6e-25 119.4 61 86.9
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 1.6e-25 119.4 61 83.6
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 1.6e-25 119.4 61 85.2
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.6e-25 119.4 61 83.6
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 2.1e-25 119.0 62 82.3
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 2.1e-25 119.0 59 89.8
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 2.1e-25 119.0 59 89.8
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 2.8e-25 118.6 61 85.2
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 2.8e-25 118.6 61 86.9
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 3.7e-25 118.2 62 85.5
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 3.7e-25 118.2 62 82.3
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 3.7e-25 118.2 61 85.2
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 3.7e-25 118.2 61 85.2
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 4.8e-25 117.9 60 86.7
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 4.8e-25 117.9 62 85.5
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 4.8e-25 117.9 62 85.5
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 6.2e-25 117.5 62 83.9
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 8.2e-25 117.1 61 83.6
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 8.2e-25 117.1 59 86.4
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 8.2e-25 117.1 68 75.0
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 8.2e-25 117.1 61 86.9
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 1.1e-24 116.7 64 81.2
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 1.4e-24 116.3 61 82.0
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 1.4e-24 116.3 62 82.3
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 1.4e-24 116.3 60 85.0
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 1.4e-24 116.3 61 83.6
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 1.8e-24 115.9 61 83.6
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 1.8e-24 115.9 60 85.0
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 2.4e-24 115.5 59 88.1
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 2.4e-24 115.5 59 84.7
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 4.1e-24 114.8 61 82.0
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 5.3e-24 114.4 61 80.3
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 5.3e-24 114.4 59 84.7
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 5.3e-24 114.4 61 83.6
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 6.9e-24 114.0 66 75.8
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 6.9e-24 114.0 95 63.2
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 9.0e-24 113.6 66 75.8
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 1.2e-23 113.2 56 87.5
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 1.5e-23 112.8 61 78.7
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 1.5e-23 112.8 60 80.0
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 2.0e-23 112.5 61 82.0
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 2.0e-23 112.5 61 78.7
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 2.6e-23 112.1 63 74.6
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 3.4e-23 111.7 59 81.4
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 4.5e-23 111.3 57 87.7
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 4.5e-23 111.3 74 68.9
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 5.8e-23 110.9 61 80.3
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 7.6e-23 110.5 61 77.0
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 7.6e-23 110.5 63 77.8
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 1.0e-22 110.2 62 79.0
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 2.2e-22 109.0 75 69.3
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 2.2e-22 109.0 60 80.0
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 2.2e-22 109.0 60 80.0
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 2.9e-22 108.6 62 75.8
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 3.8e-22 108.2 59 78.0
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 3.8e-22 108.2 60 80.0
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 3.8e-22 108.2 60 80.0
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 5.0e-22 107.8 60 75.0
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 6.5e-22 107.5 64 76.6
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 6.5e-22 107.5 64 76.6
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 8.4e-22 107.1 62 77.4
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 1.4e-21 106.3 58 79.3
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 2.5e-21 105.5 60 76.7
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 7.9e-20 100.5 62 64.5
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 1.3e-19 99.8 57 77.2
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 4.3e-18 94.7 61 70.5
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 2.8e-17 92.0 50 76.0
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 6.3e-17 90.9 62 58.1
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 8.2e-17 90.5 47 80.9
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 1.1e-16 90.1 46 84.8
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 3.1e-16 88.6 62 56.5
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 3.1e-16 88.6 57 70.2
Thhalv10022333m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 2.0e-15 85.9 62 64.5
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 4.5e-15 84.7 45 82.2
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 5.0e-14 81.3 58 56.9
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 5.0e-14 81.3 58 56.9
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 6.5e-14 80.9 57 56.1
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 3.2e-13 78.6 69 49.3
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 2.1e-12 75.9 61 54.1
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 7.9e-12 73.9 60 61.7
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.8e-11 72.8 52 61.5
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 5.1e-11 71.2 47 63.8
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 1.5e-10 69.7 50 58.0
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 3.7e-09 65.1 53 52.8
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 1.5e-07 59.7 50 48.0
SGA_v2.0_scaffold234G43604 Striga asiatica HOM05D004074 ORTHO05D405016 8.5e-06 53.9 32 65.6


User provided reference genes

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