Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 3.0e-131 471.9 237 100.0
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 5.5e-101 371.3 231 83.1
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.2e-94 349.4 238 75.6
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.2e-92 343.6 231 75.3
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.9e-92 340.9 230 75.7
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 8.8e-91 337.4 233 73.4
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 2.5e-85 319.3 231 69.3
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 2.3e-83 312.8 231 69.7
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 8.8e-83 310.8 229 69.4
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 3.3e-82 308.9 225 68.4
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 3.3e-82 308.9 215 69.8
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 4.4e-82 308.5 231 68.4
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 7.4e-82 307.8 231 67.5
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 7.4e-82 307.8 232 66.8
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 7.4e-82 307.8 196 77.6
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 7.4e-82 307.8 224 68.8
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 1.3e-81 307.0 228 68.0
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.8e-81 305.8 186 81.2
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 2.8e-81 305.8 235 68.5
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 1.1e-80 303.9 231 66.7
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 2.4e-80 302.8 229 69.0
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.4e-80 302.8 231 66.7
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 4.1e-80 302.0 233 67.0
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 4.1e-80 302.0 231 65.4
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 9.1e-80 300.8 231 66.2
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 9.1e-80 300.8 205 70.2
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.5e-79 300.1 204 73.5
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.5e-79 300.1 204 73.5
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 2.6e-79 299.3 231 64.5
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 3.5e-79 298.9 231 65.4
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 1.0e-78 297.4 213 69.5
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 1.3e-78 297.0 231 64.5
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 1.7e-78 296.6 219 68.5
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 2.2e-78 296.2 231 69.7
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 3.8e-78 295.4 229 67.2
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 5.0e-78 295.0 238 64.7
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 5.0e-78 295.0 238 64.7
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 1.1e-77 293.9 206 72.3
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 1.5e-77 293.5 232 63.8
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 2.5e-77 292.7 236 63.6
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 3.2e-77 292.4 238 64.3
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 3.2e-77 292.4 229 65.1
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.2e-77 292.0 198 73.7
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 4.2e-77 292.0 236 61.0
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 7.2e-77 291.2 236 63.1
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 9.4e-77 290.8 208 69.7
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 9.4e-77 290.8 206 69.9
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.1e-76 289.7 212 68.9
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.1e-76 289.7 212 68.9
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 2.1e-76 289.7 217 66.4
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 2.7e-76 289.3 196 71.9
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 3.6e-76 288.9 223 65.5
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 3.6e-76 288.9 234 63.2
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 4.7e-76 288.5 216 67.6
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 8.0e-76 287.7 244 61.9
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 8.0e-76 287.7 225 63.6
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 1.0e-75 287.3 228 65.4
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 1.4e-75 287.0 187 75.4
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 1.4e-75 287.0 210 68.1
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.4e-75 287.0 208 68.8
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.8e-75 286.6 196 70.9
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.8e-75 286.6 212 68.4
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 1.8e-75 286.6 222 64.9
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 2.3e-75 286.2 198 70.7
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 3.0e-75 285.8 198 70.2
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 3.0e-75 285.8 236 61.4
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 3.0e-75 285.8 231 62.3
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 3.9e-75 285.4 224 63.8
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 3.9e-75 285.4 231 62.8
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.9e-75 285.4 208 67.3
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 5.2e-75 285.0 227 63.0
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 6.7e-75 284.6 196 70.4
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 1.1e-74 283.9 286 53.8
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 1.1e-74 283.9 225 62.7
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 1.5e-74 283.5 206 67.0
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 1.5e-74 283.5 228 62.3
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 1.5e-74 283.5 229 61.6
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 1.5e-74 283.5 225 65.3
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 2.0e-74 283.1 193 71.5
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 2.0e-74 283.1 239 61.1
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 2.6e-74 282.7 206 68.0
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 3.3e-74 282.3 224 65.6
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 3.3e-74 282.3 206 68.0
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 3.3e-74 282.3 223 66.4
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 4.4e-74 282.0 206 66.5
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 4.4e-74 282.0 227 62.6
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 7.4e-74 281.2 206 67.5
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 4.8e-73 278.5 203 67.0
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 6.3e-73 278.1 200 69.5
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 8.2e-73 277.7 217 64.5
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 4.1e-72 275.4 240 60.4
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 4.1e-72 275.4 227 60.4
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 7.7e-71 271.2 226 61.1
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 1.7e-70 270.0 227 60.8
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 2.2e-70 269.6 233 59.2
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 5.0e-70 268.5 262 55.7
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.1e-69 267.3 245 57.6
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 1.9e-69 266.5 231 58.0
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 9.4e-69 264.2 218 59.6
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.1e-68 263.1 225 59.6
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 2.7e-68 262.7 229 58.5
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 3.6e-68 262.3 219 59.8
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 4.7e-68 261.9 190 67.4
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 1.0e-67 260.8 236 58.5
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 1.4e-67 260.4 253 54.9
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 2.3e-67 259.6 210 60.0
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 5.7e-66 255.0 218 59.2
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.7e-65 252.3 246 56.9
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 6.3e-65 251.5 212 60.8
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 3.1e-64 249.2 230 54.8
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 5.3e-64 248.4 204 57.4
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 2.0e-63 246.5 162 75.9
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 2.5e-61 239.6 220 57.3
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 4.2e-61 238.8 164 74.4
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 9.4e-61 237.7 252 54.0
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 1.2e-60 237.3 168 69.0
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 4.0e-59 232.3 220 56.8
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 1.5e-58 230.3 199 55.3
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 7.5e-58 228.0 234 49.1
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.3e-57 227.3 164 70.7
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 6.3e-57 224.9 227 52.0
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 9.5e-53 211.1 162 64.8
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 9.5e-53 211.1 175 63.4
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 4.7e-52 208.8 166 66.9
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 1.2e-39 167.5 193 42.5
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.7e-38 163.7 243 42.8
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.3e-38 163.3 118 70.3
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 3.0e-38 162.9 223 40.4
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 8.9e-35 151.4 204 39.2
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 3.4e-34 149.4 114 65.8
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 1.3e-33 147.5 118 63.6
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 7.8e-31 138.3 96 68.8
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.3e-30 136.7 96 68.8
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 5.1e-30 135.6 147 53.7
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 8.6e-30 134.8 147 53.7
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 1.5e-29 134.0 157 43.3
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.9e-22 109.4 120 48.3
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.9e-22 109.4 129 46.5
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.3e-21 106.3 85 61.2
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 2.4e-19 100.1 92 55.4
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.2e-15 87.8 69 63.8
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 1.3e-14 84.3 198 29.3
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.6e-12 77.4 219 31.1
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 3.6e-12 76.3 44 81.8
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 6.2e-12 75.5 82 50.0
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 5.8e-10 68.9 56 62.5
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 1.4e-08 64.3 49 69.4
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 4.6e-07 59.3 121 28.1
Gohir.D04G053733 Gossypium hirsutum HOM05D004903 ORTHO05D036089 3.9e-06 56.2 55 56.4
arahy.Tifrunner.gnm1.ann1.ZRCJ38 Arachis hypogaea HOM05D004903 ORTHO05D005849 5.1e-06 55.8 65 53.8


User provided reference genes

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