Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0240100 Rhododendron simsii HOM05D006969 ORTHO05D008826 7.8e-40 166.8 90 100.0
Rhsim03G0028100 Rhododendron simsii HOM05D006969 ORTHO05D008826 2.3e-36 155.2 89 94.4
Rhsim04G0121200 Rhododendron simsii HOM05D006969 ORTHO05D008826 2.1e-32 142.1 88 88.6
Rhsim04G0114700 Rhododendron simsii HOM05D006969 ORTHO05D008826 1.2e-24 116.3 74 87.8
vmacro08948 Vaccinium macrocarpon HOM05D006969 ORTHO05D008826 2.7e-24 115.2 91 76.9
Dinv16967 Davidia involucrata HOM05D006969 ORTHO05D008826 1.7e-18 95.9 88 67.0
Haze_21189 Corylus avellana HOM05D006969 ORTHO05D008826 5.4e-17 90.9 87 57.5
Cfa017015 Carpinus fangiana HOM05D006969 ORTHO05D008826 4.6e-16 87.8 83 59.0
TAR623G0846 Trochodendron aralioides HOM05D006969 ORTHO05D008826 6.0e-16 87.4 88 56.8
Sabra06G0085100 Salix brachista HOM05D006969 ORTHO05D008826 1.0e-15 86.7 84 56.0
COL.COLO4_03930 Corchorus olitorius HOM05D006969 ORTHO05D008826 2.3e-15 85.5 106 52.8
Prupe.6G295300 Prunus persica HOM05D006969 ORTHO05D008826 2.3e-15 85.5 87 60.9
Potri.006G109400 Populus trichocarpa HOM05D006969 ORTHO05D008826 3.0e-15 85.1 84 54.8
Cpa.g.sc86.76 Carica papaya HOM05D006969 ORTHO05D008826 5.1e-15 84.3 84 57.1
MD04G1175800 Malus domestica HOM05D006969 ORTHO05D008826 5.1e-15 84.3 86 58.1
Potri.016G138300 Populus trichocarpa HOM05D006969 ORTHO05D008826 2.5e-14 82.0 84 53.6
Sc20g0007050 Simmondsia chinensis HOM05D006969 ORTHO05D008826 2.5e-14 82.0 83 57.8
ClCG04G006330 Citrullus lanatus HOM05D006969 ORTHO05D008826 3.3e-14 81.6 88 55.7
QL07p007469 Quercus lobata HOM05D006969 ORTHO05D008826 3.3e-14 81.6 88 55.7
PGR004G2771 Punica granatum HOM05D006969 ORTHO05D008826 5.6e-14 80.9 93 53.8
vmacro08947 Vaccinium macrocarpon HOM05D000266 ORTHO05D008826 5.6e-14 80.9 59 78.0
Duzib212G0164 Durio zibethinus HOM05D006969 ORTHO05D008826 7.3e-14 80.5 94 54.3
CiPaw.10G165400 Carya illinoinensis HOM05D006969 ORTHO05D008826 1.2e-13 79.7 83 57.8
SalBow7G4609 Salvia bowleyana HOM05D006969 ORTHO05D008826 1.6e-13 79.3 87 52.9
Gohir.A10G153400 Gossypium hirsutum HOM05D006969 ORTHO05D008826 2.8e-13 78.6 95 51.6
Cc06_g18790 Coffea canephora HOM05D006969 ORTHO05D008826 3.6e-13 78.2 94 55.3
Gohir.D10G112800 Gossypium hirsutum HOM05D006969 ORTHO05D008826 3.6e-13 78.2 96 52.1
Gorai.011G124600 Gossypium raimondii HOM05D006969 ORTHO05D008826 3.6e-13 78.2 96 52.1
QL07p031897 Quercus lobata HOM05D006969 ORTHO05D008826 4.7e-13 77.8 88 53.4
Manes.09G123300 Manihot esculenta HOM05D006969 ORTHO05D008826 6.2e-13 77.4 83 54.2
Thecc.04G150100 Theobroma cacao HOM05D006969 ORTHO05D008826 6.2e-13 77.4 93 54.8
Aqoxy2G00712 Aquilegia oxysepala HOM05D006969 ORTHO05D008826 8.1e-13 77.0 84 50.0
Duzib151G0817 Durio zibethinus HOM05D006969 ORTHO05D008826 1.4e-12 76.3 93 51.6
TWI74G1273 Tripterygium wilfordii HOM05D006969 ORTHO05D008826 4.0e-12 74.7 91 53.8
MELO3C025225.2 Cucumis melo HOM05D006969 ORTHO05D008826 9.0e-12 73.6 88 53.4
Sabra04G0154500 Salix brachista HOM05D006969 ORTHO05D008826 9.0e-12 73.6 84 48.8
Ciclev10013711m.g Citrus clementina HOM05D006969 ORTHO05D008826 1.2e-11 73.2 85 54.1
MD05G1222900 Malus domestica HOM05D006969 ORTHO05D008826 1.5e-11 72.8 86 54.7
MD12G1190200 Malus domestica HOM05D006969 ORTHO05D008826 1.5e-11 72.8 86 54.7
arahy.Tifrunner.gnm1.ann1.M5JM96 Arachis hypogaea HOM05D006969 ORTHO05D008826 2.0e-11 72.4 76 55.3
RcHm_v2.0_Chr3g0460321 Rosa chinensis HOM05D006969 ORTHO05D008826 2.0e-11 72.4 88 50.0
GSVIVG01030170001 Vitis vinifera HOM05D006969 ORTHO05D008826 2.0e-11 72.4 87 51.7
Nitab4.5_0000048g0110 Nicotiana tabacum HOM05D006969 ORTHO05D008826 2.6e-11 72.0 89 50.6
arahy.Tifrunner.gnm1.ann1.K8QDZW Arachis hypogaea HOM05D006969 ORTHO05D008826 3.4e-11 71.6 76 53.9
arahy.Tifrunner.gnm1.ann1.PQ2I5M Arachis hypogaea HOM05D006969 ORTHO05D008826 3.4e-11 71.6 76 53.9
CsaV3_4G027220 Cucumis sativus L. HOM05D006969 ORTHO05D008826 3.4e-11 71.6 88 52.3
Thhalv10015463m.g Eutrema salsugineum HOM05D006969 ORTHO05D008826 3.4e-11 71.6 65 64.6
FAN02G3877 Fragaria x ananassa HOM05D006969 ORTHO05D008826 3.4e-11 71.6 83 50.6
Nitab4.5_0002758g0050 Nicotiana tabacum HOM05D006969 ORTHO05D008826 3.4e-11 71.6 91 47.3
Sed0006435 Sechium edule HOM05D006969 ORTHO05D008826 3.4e-11 71.6 85 54.1
FAN09G3593 Fragaria x ananassa HOM05D006969 ORTHO05D008826 4.4e-11 71.2 80 48.8
Oeu038184.1 Olea europaea HOM05D006969 ORTHO05D008826 4.4e-11 71.2 92 52.2
arahy.Tifrunner.gnm1.ann1.A09QMR Arachis hypogaea HOM05D006410 ORTHO05D007914 5.8e-11 70.9 76 53.9
arahy.Tifrunner.gnm1.ann1.PEH6CG Arachis hypogaea HOM05D006410 ORTHO05D007914 5.8e-11 70.9 76 53.9
ECA248G1739 Erigeron canadensis HOM05D000251 ORTHO05D002506 5.8e-11 70.9 93 48.4
PGSC0003DMG400027666 Solanum tuberosum HOM05D006969 ORTHO05D008826 5.8e-11 70.9 64 62.5
FAN05G1635 Fragaria x ananassa HOM05D006969 ORTHO05D008826 7.6e-11 70.5 83 49.4
HanXRQChr01g0000581 Helianthus annuus HOM05D006969 ORTHO05D008826 7.6e-11 70.5 103 45.6
AUR62006430 Chenopodium quinoa HOM05D006969 ORTHO05D008826 9.9e-11 70.1 89 49.4
Glyma.18G213000 Glycine max HOM05D006969 ORTHO05D008826 9.9e-11 70.1 84 56.0
Gohir.A02G002800 Gossypium hirsutum HOM05D006969 ORTHO05D008826 9.9e-11 70.1 82 51.2
Gorai.005G003600 Gossypium raimondii HOM05D006969 ORTHO05D008826 9.9e-11 70.1 82 51.2
PSO384G0233 Papaver somniferum HOM05D006969 ORTHO05D008826 9.9e-11 70.1 80 51.2
Sopen06g034210 Solanum pennellii HOM05D006969 ORTHO05D008826 9.9e-11 70.1 64 62.5
Nitab4.5_0000430g0190 Nicotiana tabacum HOM05D006969 ORTHO05D008826 1.3e-10 69.7 89 49.4
Sp6g41160 Schrenkiella parvula HOM05D006969 ORTHO05D008826 1.3e-10 69.7 75 57.3
Solyc06g082850.4 Solanum lycopersicum HOM05D006969 ORTHO05D008826 1.3e-10 69.7 64 60.9
BcaB01g04376 Brassica carinata HOM05D006969 ORTHO05D008826 1.7e-10 69.3 84 46.4
Ca_07767_v3 Cicer arietinum L. HOM05D006410 ORTHO05D007914 1.7e-10 69.3 88 51.1
Ca_07774_v3 Cicer arietinum L. HOM05D006410 ORTHO05D007914 1.7e-10 69.3 88 51.1
FvH4_6g09670 Fragaria vesca HOM05D006969 ORTHO05D008826 1.7e-10 69.3 83 49.4
FAN14G4271 Fragaria x ananassa HOM05D006969 ORTHO05D008826 1.7e-10 69.3 83 49.4
Medtr7g073500 Medicago truncatula HOM05D006969 ORTHO05D008826 1.7e-10 69.3 69 58.0
Peaxi162Scf00732g00235 Petunia axillaris HOM05D006969 ORTHO05D008826 2.2e-10 68.9 61 60.7
Atru.chr8.92 Acer truncatum HOM05D006969 ORTHO05D008826 2.9e-10 68.6 66 56.1
arahy.Tifrunner.gnm1.ann1.F2WGAE Arachis hypogaea HOM05D006969 ORTHO05D008826 2.9e-10 68.6 76 53.9
PSO339G3220 Papaver somniferum HOM05D006969 ORTHO05D008826 2.9e-10 68.6 84 47.6
Psat3g118680 Pisum sativum HOM05D006969 ORTHO05D008826 2.9e-10 68.6 88 47.7
AL6G10120 Arabidopsis lyrata HOM05D006969 ORTHO05D008826 6.4e-10 67.4 70 58.6
CANSAT25G2928 Cannabis sativa HOM05D006969 ORTHO05D008826 6.4e-10 67.4 68 55.9
Gohir.D02G003100 Gossypium hirsutum HOM05D006969 ORTHO05D008826 6.4e-10 67.4 82 50.0
Ah.15g089930 Amaranthus hybridus HOM05D006969 ORTHO05D008826 8.4e-10 67.0 65 56.9
A03p00060 Brassica napus HOM05D006969 ORTHO05D008826 1.1e-09 66.6 65 56.9
BraA03t09395Z Brassica rapa HOM05D006969 ORTHO05D008826 1.1e-09 66.6 65 56.9
Nitab4.5_0002655g0130 Nicotiana tabacum HOM05D006969 ORTHO05D008826 1.1e-09 66.6 61 52.5
MSTRG.18936 Avicennia marina HOM05D006969 ORTHO05D008826 1.9e-09 65.9 89 47.2
DCAR_023968 Daucus carota HOM05D006969 ORTHO05D008826 1.9e-09 65.9 62 58.1
Glyma.09G273800 Glycine max HOM05D006969 ORTHO05D008826 1.9e-09 65.9 84 53.6
TPR.G24295 Trifolium pratense HOM05D006969 ORTHO05D008826 1.9e-09 65.9 79 50.6
Aa31LG5G11450 Aethionema arabicum HOM05D006969 ORTHO05D008826 2.4e-09 65.5 68 55.9
AT5G01910 Arabidopsis thaliana HOM05D006969 ORTHO05D008826 2.4e-09 65.5 62 61.3
BcaB01g06123 Brassica carinata HOM05D006969 ORTHO05D008826 2.4e-09 65.5 65 55.4
BolC3t12589H Brassica oleracea HOM05D006969 ORTHO05D008826 2.4e-09 65.5 65 55.4
AUR62029780 Chenopodium quinoa HOM05D006969 ORTHO05D008826 2.4e-09 65.5 89 46.1
VMungo1383G3295 Vigna mungo HOM05D006969 ORTHO05D008826 2.4e-09 65.5 85 52.9
Lj1g0009458 Lotus japonicus HOM05D006969 ORTHO05D008826 4.2e-09 64.7 89 44.9
Phvul.008G081600 Phaseolus vulgaris HOM05D006969 ORTHO05D008826 4.2e-09 64.7 85 51.8
TWI77G0392 Tripterygium wilfordii HOM05D006969 ORTHO05D008826 4.2e-09 64.7 65 58.5
C03p00200 Brassica napus HOM05D006969 ORTHO05D008826 7.1e-09 63.9 65 53.8
Nn5g26829 Nelumbo nucifera HOM05D006969 ORTHO05D008826 1.2e-08 63.2 77 50.6
Migut.J00029 Erythranthe guttata HOM05D006969 ORTHO05D008826 2.1e-08 62.4 61 52.5
Carub.0024s0013 Capsella rubella HOM05D006969 ORTHO05D008826 7.8e-08 60.5 65 53.8
Lalb_Chr01g0023811 Lupinus albus HOM05D006969 ORTHO05D008826 7.8e-08 60.5 80 43.8
EL10Ac7g17114 Beta vulgaris HOM05D006969 ORTHO05D008826 1.0e-07 60.1 89 44.9
MSTRG.5490 Avicennia marina HOM05D006969 ORTHO05D008826 1.3e-07 59.7 89 39.3
CDE06G1555 Ceratophyllum demersum HOM05D006969 ORTHO05D008826 3.0e-07 58.5 86 41.9
Hund19755 Selenicereus undatus HOM05D006969 ORTHO05D008826 3.9e-07 58.2 91 42.9
THA.LOC104823322 Tarenaya hassleriana HOM05D006969 ORTHO05D008826 6.6e-07 57.4 61 55.7
unitig_22.g6613 Utricularia gibba HOM05D006969 ORTHO05D008826 8.7e-07 57.0 87 43.7
CARHR212260 Cardamine hirsuta HOM05D006969 ORTHO05D008826 1.1e-06 56.6 62 56.5
CDE07G1521 Ceratophyllum demersum HOM05D006969 ORTHO05D008826 5.6e-06 54.3 71 43.7
MBI03_g05807_MAGBIO Magnolia biondii HOM05D006969 ORTHO05D008826 9.6e-06 53.5 60 48.3


User provided reference genes

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