Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0238500 Rhododendron simsii HOM05D001194 ORTHO05D004786 1.2e-135 486.5 235 100.0
vmacro18823 Vaccinium macrocarpon HOM05D001194 ORTHO05D004786 2.0e-26 123.6 87 78.2
Hma1.2p1_0388F.1_g142150 Hydrangea macrophylla HOM05D001194 ORTHO05D004786 1.8e-16 90.5 88 62.5
Dinv37935 Davidia involucrata HOM05D001194 ORTHO05D004786 4.1e-16 89.4 57 80.7
CSS0039198 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D004786 9.2e-16 88.2 69 69.6
Actinidia32129 Actinidia chinensis HOM05D001194 ORTHO05D004786 1.6e-15 87.4 70 67.1
Dinv30401 Davidia involucrata HOM05D001194 ORTHO05D004786 1.6e-15 87.4 70 65.7
Thecc.06G107500 Theobroma cacao HOM05D001194 ORTHO05D004786 1.6e-15 87.4 72 65.3
Solyc03g121320.3 Solanum lycopersicum HOM05D001194 ORTHO05D004786 1.0e-14 84.7 65 67.7
Sopen03g040130 Solanum pennellii HOM05D001194 ORTHO05D004786 1.0e-14 84.7 65 67.7
Actinidia39123 Actinidia chinensis HOM05D001194 ORTHO05D004786 1.7e-14 84.0 66 68.2
PGSC0003DMG400002598 Solanum tuberosum HOM05D001194 ORTHO05D004786 1.7e-14 84.0 65 64.6
Ciclev10027499m.g Citrus clementina HOM05D001194 ORTHO05D004786 3.0e-14 83.2 72 65.3
Gohir.A10G062200 Gossypium hirsutum HOM05D001194 ORTHO05D004786 3.9e-14 82.8 60 71.7
Gohir.D10G063900 Gossypium hirsutum HOM05D001194 ORTHO05D004786 3.9e-14 82.8 60 71.7
Gorai.011G067800 Gossypium raimondii HOM05D001194 ORTHO05D004786 3.9e-14 82.8 60 71.7
Actinidia09019 Actinidia chinensis HOM05D001194 ORTHO05D004786 6.6e-14 82.0 70 61.4
Duzib160G0776 Durio zibethinus HOM05D001194 ORTHO05D004786 6.6e-14 82.0 72 62.5
Duzib235G0513 Durio zibethinus HOM05D001194 ORTHO05D004786 6.6e-14 82.0 72 62.5
Duzib192G0939 Durio zibethinus HOM05D001194 ORTHO05D004786 1.1e-13 81.3 60 70.0
Oeu039983.2 Olea europaea HOM05D001194 ORTHO05D004786 1.9e-13 80.5 65 63.1
Gohir.A05G133600 Gossypium hirsutum HOM05D001194 ORTHO05D004786 4.3e-13 79.3 60 68.3
Gohir.D05G135500 Gossypium hirsutum HOM05D001194 ORTHO05D004786 4.3e-13 79.3 60 68.3
MD09G1196400 Malus domestica HOM05D001194 ORTHO05D004786 4.3e-13 79.3 58 67.2
Atru.chr1.3627 Acer truncatum HOM05D001194 ORTHO05D004786 5.6e-13 79.0 72 61.1
COL.COLO4_30602 Corchorus olitorius HOM05D001194 ORTHO05D004786 5.6e-13 79.0 60 68.3
Glyma.07G012700 Glycine max HOM05D001194 ORTHO05D004786 9.5e-13 78.2 59 67.8
TAR626G0784 Trochodendron aralioides HOM05D001194 ORTHO05D004786 9.5e-13 78.2 60 65.0
VMungo0331G0192 Vigna mungo HOM05D001194 ORTHO05D004786 1.2e-12 77.8 57 70.2
TWI75G1010 Tripterygium wilfordii HOM05D001194 ORTHO05D004786 1.6e-12 77.4 60 66.7
TWI79G0629 Tripterygium wilfordii HOM05D001194 ORTHO05D004786 1.6e-12 77.4 54 74.1
Gorai.009G139300 Gossypium raimondii HOM05D001194 ORTHO05D004786 2.1e-12 77.0 60 66.7
CANSAT56G4545 Cannabis sativa HOM05D001194 ORTHO05D004786 2.8e-12 76.6 72 58.3
Lj3g0001136 Lotus japonicus HOM05D001194 ORTHO05D005909 2.8e-12 76.6 59 67.8
MSTRG.22608 Avicennia marina HOM05D001194 ORTHO05D004786 3.6e-12 76.3 82 54.9
CAN.G1668.4 Capsicum annuum HOM05D001194 ORTHO05D004786 3.6e-12 76.3 64 59.4
Cpa.g.sc131.28 Carica papaya HOM05D001194 ORTHO05D004786 3.6e-12 76.3 52 75.0
Glyma.08G196400 Glycine max HOM05D001194 ORTHO05D004786 3.6e-12 76.3 59 66.1
Nitab4.5_0006071g0040 Nicotiana tabacum HOM05D001194 ORTHO05D004786 3.6e-12 76.3 65 58.5
RcHm_v2.0_Chr2g0142441 Rosa chinensis HOM05D001194 ORTHO05D004786 3.6e-12 76.3 72 56.9
Lalb_Chr25g0280541 Lupinus albus HOM05D001194 ORTHO05D004786 4.7e-12 75.9 60 66.7
SalBow6G0245 Salvia bowleyana HOM05D001194 ORTHO05D004786 4.7e-12 75.9 74 58.1
Phvul.010G142200 Phaseolus vulgaris HOM05D001194 ORTHO05D004786 6.2e-12 75.5 59 66.1
CiPaw.01G227400 Carya illinoinensis HOM05D001194 ORTHO05D004786 8.0e-12 75.1 70 55.7
Lj5A50T63 Lonicera japonica HOM05D001194 ORTHO05D004786 8.0e-12 75.1 60 66.7
MD17G1177200 Malus domestica HOM05D001194 ORTHO05D004786 8.0e-12 75.1 77 54.5
Nitab4.5_0004848g0070 Nicotiana tabacum HOM05D001194 ORTHO05D004786 8.0e-12 75.1 65 56.9
QL05p015783 Quercus lobata HOM05D001194 ORTHO05D004786 8.0e-12 75.1 77 57.1
Eucgr.F03102 Eucalyptus grandis HOM05D001194 ORTHO05D004786 1.4e-11 74.3 69 59.4
FvH4_6g32930 Fragaria vesca HOM05D001194 ORTHO05D004786 1.4e-11 74.3 72 54.2
FAN05G2170 Fragaria x ananassa HOM05D001194 ORTHO05D004786 1.4e-11 74.3 72 54.2
FAN09G4892 Fragaria x ananassa HOM05D001194 ORTHO05D004786 1.4e-11 74.3 72 54.2
FAN14G3355 Fragaria x ananassa HOM05D001194 ORTHO05D004786 1.4e-11 74.3 72 54.2
Rhsim08G0238800 Rhododendron simsii HOM05D001729 ORTHO05D001155 1.4e-11 74.3 52 69.2
Ca_23293_v3 Cicer arietinum L. HOM05D001194 ORTHO05D004786 2.3e-11 73.6 59 67.8
Lalb_Chr04g0263121 Lupinus albus HOM05D001194 ORTHO05D004786 2.3e-11 73.6 59 67.8
THA.LOC104810562 Tarenaya hassleriana HOM05D001194 ORTHO05D004786 3.1e-11 73.2 49 71.4
Peaxi162Scf00038g01230 Petunia axillaris HOM05D001194 ORTHO05D004786 4.0e-11 72.8 57 61.4
Sed0000220 Sechium edule HOM05D001194 ORTHO05D004786 4.0e-11 72.8 54 74.1
Cc04_g02260 Coffea canephora HOM05D001194 ORTHO05D004786 5.2e-11 72.4 54 72.2
MELO3C024404.2 Cucumis melo HOM05D001194 ORTHO05D004786 5.2e-11 72.4 56 69.6
CsaV3_7G034920 Cucumis sativus L. HOM05D001194 ORTHO05D004786 5.2e-11 72.4 56 69.6
FAN02G3247 Fragaria x ananassa HOM05D001194 ORTHO05D004786 5.2e-11 72.4 58 60.3
Cfa003608 Carpinus fangiana HOM05D001194 ORTHO05D004786 6.8e-11 72.0 57 64.9
ClCG09G000530 Citrullus lanatus HOM05D001194 ORTHO05D004786 6.8e-11 72.0 54 72.2
Haze_15917 Corylus avellana HOM05D001194 ORTHO05D004786 6.8e-11 72.0 57 64.9
Manes.11G028900 Manihot esculenta HOM05D001194 ORTHO05D004786 6.8e-11 72.0 59 62.7
arahy.Tifrunner.gnm1.ann1.E6TDML Arachis hypogaea HOM05D001194 ORTHO05D004786 8.9e-11 71.6 86 52.3
Carub.0003s2131 Capsella rubella HOM05D001194 ORTHO05D004786 8.9e-11 71.6 57 63.2
Sabra01G0135400 Salix brachista HOM05D001194 ORTHO05D004786 2.0e-10 70.5 57 63.2
THA.LOC104817938 Tarenaya hassleriana HOM05D001194 ORTHO05D004786 2.0e-10 70.5 49 69.4
ATR0789G175 Amborella trichopoda HOM05D001194 ORTHO05D004786 2.6e-10 70.1 60 63.3
MELO3C013030.2 Cucumis melo HOM05D001194 ORTHO05D004786 2.6e-10 70.1 59 66.1
Oeu002522.1 Olea europaea HOM05D001194 ORTHO05D004786 2.6e-10 70.1 65 58.5
AT3G21295 Arabidopsis thaliana HOM05D001194 ORTHO05D004786 3.4e-10 69.7 57 61.4
ClCG07G013600 Citrullus lanatus HOM05D001194 ORTHO05D004786 3.4e-10 69.7 62 61.3
arahy.Tifrunner.gnm1.ann1.3FEZ81 Arachis hypogaea HOM05D001194 ORTHO05D005909 4.4e-10 69.3 45 77.8
arahy.Tifrunner.gnm1.ann1.86BA7N Arachis hypogaea HOM05D001194 ORTHO05D005909 4.4e-10 69.3 45 77.8
Psat4g194520 Pisum sativum HOM05D001194 ORTHO05D004786 4.4e-10 69.3 59 64.4
Sabra03G0020700 Salix brachista HOM05D001194 ORTHO05D004786 4.4e-10 69.3 57 61.4
Potri.001G193900 Populus trichocarpa HOM05D001194 ORTHO05D004786 5.8e-10 68.9 57 61.4
MSTRG.11007 Avicennia marina HOM05D001194 ORTHO05D004786 7.5e-10 68.6 76 51.3
Nn6g35405 Nelumbo nucifera HOM05D001194 ORTHO05D004786 7.5e-10 68.6 54 64.8
arahy.Tifrunner.gnm1.ann1.V1VE37 Arachis hypogaea HOM05D001194 ORTHO05D004786 9.8e-10 68.2 45 77.8
Potri.003G045600 Populus trichocarpa HOM05D001194 ORTHO05D004786 9.8e-10 68.2 57 59.6
Aqoxy7G01308 Aquilegia oxysepala HOM05D001194 ORTHO05D004786 1.3e-09 67.8 56 62.5
CsaV3_3G044030 Cucumis sativus L. HOM05D001194 ORTHO05D004786 1.3e-09 67.8 59 64.4
CiPaw.02G142200 Carya illinoinensis HOM05D001194 ORTHO05D004786 1.7e-09 67.4 58 62.1
SHI11176 Sapria himalayana HOM05D001194 ORTHO05D004786 1.7e-09 67.4 48 66.7
SGA_v2.0_scaffold71G23755 Striga asiatica HOM05D001194 ORTHO05D004786 1.7e-09 67.4 45 77.8
Psat7g152400 Pisum sativum HOM05D001194 ORTHO05D004786 2.2e-09 67.0 59 61.0
AL3G35340 Arabidopsis lyrata HOM05D001194 ORTHO05D004786 2.9e-09 66.6 59 55.9
Rhsim08G0237800 Rhododendron simsii HOM05D001729 ORTHO05D001155 2.9e-09 66.6 55 61.8
TAR383G0892 Trochodendron aralioides HOM05D001194 ORTHO05D004786 2.9e-09 66.6 60 58.3
GSVIVG01016893001 Vitis vinifera HOM05D001194 ORTHO05D004786 2.9e-09 66.6 46 73.9
CARHR097200 Cardamine hirsuta HOM05D001194 ORTHO05D004786 4.9e-09 65.9 49 63.3
DCAR_016175 Daucus carota HOM05D001194 ORTHO05D004786 4.9e-09 65.9 61 54.1
Sp3g19340 Schrenkiella parvula HOM05D001194 ORTHO05D004786 6.4e-09 65.5 46 69.6
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 8.3e-09 65.1 52 67.3
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 8.3e-09 65.1 52 67.3
Rhsim08G0219900 Rhododendron simsii HOM05D001729 ORTHO05D001155 8.3e-09 65.1 51 60.8
Thhalv10020246m.g Eutrema salsugineum HOM05D001194 ORTHO05D004786 1.1e-08 64.7 57 61.4
Lsat_1_v5_gn_1_36500 Lactuca sativa HOM05D001194 ORTHO05D004786 1.1e-08 64.7 44 77.3
Gohir.D09G080600 Gossypium hirsutum HOM05D001194 ORTHO05D004786 1.9e-08 63.9 46 69.6
Gorai.006G096200 Gossypium raimondii HOM05D001194 ORTHO05D004786 1.9e-08 63.9 46 69.6
Lalb_Chr22g0351691 Lupinus albus HOM05D001194 ORTHO05D004786 1.9e-08 63.9 59 59.3
TPR.G8747 Trifolium pratense HOM05D001194 ORTHO05D004786 3.2e-08 63.2 58 60.3
Lj3g0009108 Lotus japonicus HOM05D001194 ORTHO05D004786 7.0e-08 62.0 46 71.7
BcaC05g28183 Brassica carinata HOM05D001194 ORTHO05D004786 9.2e-08 61.6 61 57.4
C05p42230 Brassica napus HOM05D001194 ORTHO05D004786 9.2e-08 61.6 61 57.4
BolC5t32951H Brassica oleracea HOM05D001194 ORTHO05D004786 9.2e-08 61.6 61 57.4
Lalb_Chr14g0372891 Lupinus albus HOM05D001194 ORTHO05D004786 9.2e-08 61.6 74 50.0
Gohir.A09G080600 Gossypium hirsutum HOM05D001194 ORTHO05D004786 1.2e-07 61.2 46 67.4
HanXRQChr04g0095981 Helianthus annuus HOM05D001194 ORTHO05D004786 1.2e-07 61.2 51 62.7
ECA247G2821 Erigeron canadensis HOM05D001194 ORTHO05D004786 1.6e-07 60.8 76 46.1
Migut.I00996 Erythranthe guttata HOM05D001194 ORTHO05D004786 1.6e-07 60.8 46 71.7
Medtr8g015580 Medicago truncatula HOM05D001194 ORTHO05D004786 1.6e-07 60.8 78 51.3
Aa31LG10G3060 Aethionema arabicum HOM05D001194 ORTHO05D004786 2.0e-07 60.5 46 67.4
A05p27320 Brassica napus HOM05D001194 ORTHO05D004786 2.0e-07 60.5 60 58.3
MBI04_g06218_MAGBIO Magnolia biondii HOM05D001194 ORTHO05D004786 2.7e-07 60.1 58 58.6
Dinv29044 Davidia involucrata HOM05D001194 ORTHO05D004506 6.0e-07 58.9 48 60.4
Migut.D00980 Erythranthe guttata HOM05D001194 ORTHO05D004786 7.8e-07 58.5 69 53.6
SGA_v2.0_scaffold45G16989 Striga asiatica HOM05D001194 ORTHO05D002622 1.0e-06 58.2 45 64.4
CSS0048118 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D004506 1.3e-06 57.8 51 56.9
SEGI_14816 Sequoiadendron giganteum HOM05D001194 ORTHO05D004786 1.3e-06 57.8 60 51.7
unitig_85.g27208 Utricularia gibba HOM05D001194 ORTHO05D004786 1.3e-06 57.8 59 54.2
Rhsim08G0220200 Rhododendron simsii HOM05D001729 ORTHO05D001155 1.7e-06 57.4 45 66.7
Sed0001910 Sechium edule HOM05D001194 ORTHO05D004786 1.7e-06 57.4 45 68.9
Aa31LG8G8000 Aethionema arabicum HOM05D001194 ORTHO05D004786 3.0e-06 56.6 42 69.0
BcaB06g26219 Brassica carinata HOM05D001194 ORTHO05D004786 3.0e-06 56.6 40 67.5
HanXRQChr02g0031511 Helianthus annuus HOM05D001194 ORTHO05D004786 3.0e-06 56.6 45 64.4
Os02g0700000 Oryza sativa ssp. japonica HOM05D001194 ORTHO05D004506 3.0e-06 56.6 66 50.0
Sc13g0010810 Simmondsia chinensis HOM05D001194 ORTHO05D004506 3.9e-06 56.2 76 42.1
Hund09771 Selenicereus undatus HOM05D001194 ORTHO05D004506 5.0e-06 55.8 50 54.0
Hund09772 Selenicereus undatus HOM05D001194 ORTHO05D004506 5.0e-06 55.8 50 54.0
TAR374G0146 Trochodendron aralioides HOM05D001194 ORTHO05D004506 5.0e-06 55.8 47 59.6
Actinidia25337 Actinidia chinensis HOM05D001194 ORTHO05D004786 6.6e-06 55.5 44 65.9
COL.COLO4_06389 Corchorus olitorius HOM05D001194 ORTHO05D004506 6.6e-06 55.5 60 51.7
unitig_52.g17694 Utricularia gibba HOM05D001194 ORTHO05D004506 6.6e-06 55.5 46 58.7
Oeu061064.2 Olea europaea HOM05D001194 ORTHO05D004506 8.6e-06 55.1 38 71.1


User provided reference genes

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