Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0237300 Rhododendron simsii HOM05D004431 ORTHO05D005053 6.4e-131 470.7 228 100.0
CSS0015138 Camellia sinensis var. sinensis HOM05D004431 ORTHO05D005053 1.7e-43 180.3 162 63.6
QL05p008292 Quercus lobata HOM05D004431 ORTHO05D005053 2.9e-43 179.5 160 60.6
GSVIVG01016781001 Vitis vinifera HOM05D004431 ORTHO05D005053 2.9e-43 179.5 303 40.9
Haze_16016 Corylus avellana HOM05D004431 ORTHO05D005053 1.5e-42 177.2 303 40.3
CANSAT56G1268 Cannabis sativa HOM05D004431 ORTHO05D005053 1.9e-42 176.8 160 61.2
Dinv04026 Davidia involucrata HOM05D004431 ORTHO05D005053 2.5e-42 176.4 162 63.0
Manes.04G143100 Manihot esculenta HOM05D004431 ORTHO05D005053 9.4e-42 174.5 301 40.5
CAN.G1387.2 Capsicum annuum HOM05D004431 ORTHO05D005053 2.7e-41 172.9 160 59.4
Cfa003544 Carpinus fangiana HOM05D004431 ORTHO05D005053 2.7e-41 172.9 303 39.9
Actinidia39085 Actinidia chinensis HOM05D004431 ORTHO05D005053 4.7e-41 172.2 158 61.4
MD09G1185800 Malus domestica HOM05D004431 ORTHO05D005053 4.7e-41 172.2 160 59.4
Manes.11G021900 Manihot esculenta HOM05D004431 ORTHO05D005053 4.7e-41 172.2 301 39.5
RcHm_v2.0_Chr2g0144801 Rosa chinensis HOM05D004431 ORTHO05D005053 6.1e-41 171.8 160 60.0
Hma1.2p1_0291F.1_g115210 Hydrangea macrophylla HOM05D004431 ORTHO05D005053 1.0e-40 171.0 160 59.4
vmacro17052 Vaccinium macrocarpon HOM05D004431 ORTHO05D005053 1.4e-40 170.6 162 61.7
FvH4_6g34480 Fragaria vesca HOM05D004431 ORTHO05D005053 5.2e-40 168.7 161 60.2
FAN14G5417 Fragaria x ananassa HOM05D004431 ORTHO05D005053 5.2e-40 168.7 161 60.2
TWI79G0584 Tripterygium wilfordii HOM05D004431 ORTHO05D005053 5.2e-40 168.7 299 38.1
ECA232G4272 Erigeron canadensis HOM05D004431 ORTHO05D005053 6.8e-40 168.3 302 38.4
Atru.chr1.3908 Acer truncatum HOM05D004431 ORTHO05D005053 1.2e-39 167.5 161 57.1
Glyma.07G036600 Glycine max HOM05D004431 ORTHO05D005053 1.2e-39 167.5 161 59.0
Nn8g38722 Nelumbo nucifera HOM05D004431 ORTHO05D005053 1.2e-39 167.5 296 38.9
Rhsim12G0209100 Rhododendron simsii HOM05D004431 ORTHO05D005053 1.2e-39 167.5 162 62.3
Prupe.3G043500 Prunus persica HOM05D004431 ORTHO05D005053 1.5e-39 167.2 160 57.5
FAN02G1223 Fragaria x ananassa HOM05D004431 ORTHO05D005053 2.0e-39 166.8 160 60.0
PGR119G2563 Punica granatum HOM05D004431 ORTHO05D005053 2.0e-39 166.8 168 57.1
Sopen12g023680 Solanum pennellii HOM05D004431 ORTHO05D005053 2.0e-39 166.8 160 58.8
arahy.Tifrunner.gnm1.ann1.R6GQUS Arachis hypogaea HOM05D004431 ORTHO05D005053 2.6e-39 166.4 160 58.1
VMungo0331G0816 Vigna mungo HOM05D004431 ORTHO05D005053 2.6e-39 166.4 161 59.0
Sed0000839 Sechium edule HOM05D004431 ORTHO05D005053 4.4e-39 165.6 160 57.5
MD17G1170400 Malus domestica HOM05D004431 ORTHO05D005053 5.7e-39 165.2 159 57.9
Peaxi162Scf00177g00416 Petunia axillaris HOM05D004431 ORTHO05D005053 5.7e-39 165.2 160 60.0
arahy.Tifrunner.gnm1.ann1.BWR49H Arachis hypogaea HOM05D004431 ORTHO05D005053 9.8e-39 164.5 163 58.3
Phvul.010G132600 Phaseolus vulgaris HOM05D004431 ORTHO05D005053 9.8e-39 164.5 161 57.8
TWI31G0700 Tripterygium wilfordii HOM05D004431 ORTHO05D005053 9.8e-39 164.5 300 37.7
FAN05G1075 Fragaria x ananassa HOM05D004431 ORTHO05D005053 1.7e-38 163.7 159 59.7
CsaV3_3G043560 Cucumis sativus L. HOM05D004431 ORTHO05D005053 2.2e-38 163.3 160 56.9
Glyma.16G006000 Glycine max HOM05D004431 ORTHO05D005053 2.2e-38 163.3 161 57.8
MELO3C025812.2 Cucumis melo HOM05D004431 ORTHO05D005053 2.8e-38 162.9 160 56.9
Nitab4.5_0000189g0240 Nicotiana tabacum HOM05D004431 ORTHO05D005053 2.8e-38 162.9 162 58.6
Psat4g183320 Pisum sativum HOM05D004431 ORTHO05D005053 2.8e-38 162.9 161 59.0
Cc04_g01450 Coffea canephora HOM05D004431 ORTHO05D005053 3.7e-38 162.5 161 59.6
Gorai.011G058000 Gossypium raimondii HOM05D004431 ORTHO05D005053 6.3e-38 161.8 297 37.0
Solyc12g049230.2 Solanum lycopersicum HOM05D004431 ORTHO05D005053 6.3e-38 161.8 160 58.1
TAR626G0841 Trochodendron aralioides HOM05D004431 ORTHO05D005053 1.1e-37 161.0 163 56.4
Potri.001G170700 Populus trichocarpa HOM05D004431 ORTHO05D005053 1.4e-37 160.6 160 57.5
FAN09G2590 Fragaria x ananassa HOM05D004431 ORTHO05D005053 1.8e-37 160.2 160 58.1
Ca_05011_v3 Cicer arietinum L. HOM05D004431 ORTHO05D005053 2.4e-37 159.8 161 57.1
Ciclev10024871m.g Citrus clementina HOM05D004431 ORTHO05D005053 2.4e-37 159.8 304 37.8
Potri.003G063300 Populus trichocarpa HOM05D004431 ORTHO05D005053 2.4e-37 159.8 160 56.9
Thecc.06G118000 Theobroma cacao HOM05D004431 ORTHO05D005053 3.1e-37 159.5 300 38.0
TAR383G0937 Trochodendron aralioides HOM05D004431 ORTHO05D005053 5.4e-37 158.7 161 56.5
Gohir.D10G054600 Gossypium hirsutum HOM05D004431 ORTHO05D005053 7.0e-37 158.3 297 36.7
RhsimUnG0003800 Rhododendron simsii HOM05D004431 ORTHO05D005053 9.1e-37 157.9 164 58.5
COL.COLO4_30777 Corchorus olitorius HOM05D004431 ORTHO05D005053 1.2e-36 157.5 159 53.5
Lj3g0020734 Lotus japonicus HOM05D004431 ORTHO05D005053 1.2e-36 157.5 162 56.8
Lsat_1_v5_gn_4_93840 Lactuca sativa HOM05D004431 ORTHO05D005053 1.6e-36 157.1 268 42.5
RhsimUnG0067200 Rhododendron simsii HOM05D004431 ORTHO05D005053 1.6e-36 157.1 165 58.8
Migut.I01062 Erythranthe guttata HOM05D004431 ORTHO05D005053 2.7e-36 156.4 160 58.8
Eucgr.F03171 Eucalyptus grandis HOM05D004431 ORTHO05D005053 5.9e-36 155.2 160 53.8
Duzib160G0723 Durio zibethinus HOM05D004431 ORTHO05D005053 7.7e-36 154.8 300 37.0
Duzib235G1186 Durio zibethinus HOM05D004431 ORTHO05D005053 1.0e-35 154.5 299 37.1
Actinidia26033 Actinidia chinensis HOM05D004431 ORTHO05D005053 2.9e-35 152.9 153 58.2
HanXRQChr09g0276761 Helianthus annuus HOM05D004431 ORTHO05D005053 2.9e-35 152.9 304 37.5
Medtr8g019650 Medicago truncatula HOM05D004431 ORTHO05D005053 2.9e-35 152.9 160 56.9
Gohir.A10G052800 Gossypium hirsutum HOM05D004431 ORTHO05D005053 5.0e-35 152.1 297 36.0
Sed0008578 Sechium edule HOM05D004431 ORTHO05D005053 5.0e-35 152.1 161 52.8
Cpa.g.sc25.101 Carica papaya HOM05D004431 ORTHO05D005053 1.5e-34 150.6 160 53.8
MSTRG.22553 Avicennia marina HOM05D004431 ORTHO05D005053 1.9e-34 150.2 161 57.8
TAR624G0141 Trochodendron aralioides HOM05D004431 ORTHO05D005053 2.5e-34 149.8 160 54.4
Oeu058720.1 Olea europaea HOM05D004431 ORTHO05D005053 3.3e-34 149.4 161 56.5
Lalb_Chr25g0281161 Lupinus albus HOM05D004431 ORTHO05D005053 5.5e-34 148.7 160 53.1
TPR.G16457 Trifolium pratense HOM05D004431 ORTHO05D005053 5.5e-34 148.7 146 58.9
Aqoxy7G04104 Aquilegia oxysepala HOM05D004431 ORTHO05D005053 9.5e-34 147.9 159 53.5
AL3G26190 Arabidopsis lyrata HOM05D004431 ORTHO05D005053 1.2e-33 147.5 159 50.9
Duzib192G0474 Durio zibethinus HOM05D004431 ORTHO05D005053 1.2e-33 147.5 300 36.3
Sp3g12240 Schrenkiella parvula HOM05D004431 ORTHO05D005053 1.6e-33 147.1 160 52.5
THA.LOC104815628 Tarenaya hassleriana HOM05D004431 ORTHO05D005053 2.1e-33 146.7 162 50.0
Aa31LG8G1190 Aethionema arabicum HOM05D004431 ORTHO05D005053 8.0e-33 144.8 159 50.3
BcaB06g25412 Brassica carinata HOM05D004431 ORTHO05D005053 8.0e-33 144.8 159 50.3
Lalb_Chr04g0263361 Lupinus albus HOM05D004431 ORTHO05D005053 8.0e-33 144.8 161 55.3
TAR371G0531 Trochodendron aralioides HOM05D004431 ORTHO05D005053 1.8e-32 143.7 275 38.5
Hma1.2p1_0496F.1_g166170 Hydrangea macrophylla HOM05D004431 ORTHO05D005053 2.3e-32 143.3 181 49.2
Nitab4.5_0003670g0020 Nicotiana tabacum HOM05D004431 ORTHO05D005053 5.2e-32 142.1 160 51.9
Lj9A522G68 Lonicera japonica HOM05D004431 ORTHO05D005053 8.9e-32 141.4 170 55.3
Sabra01G0140500 Salix brachista HOM05D004431 ORTHO05D005053 1.2e-31 141.0 195 46.7
Actinidia32177 Actinidia chinensis HOM05D004431 ORTHO05D005053 1.5e-31 140.6 162 54.3
BcaC05g29131 Brassica carinata HOM05D004431 ORTHO05D005053 2.6e-31 139.8 160 48.8
C05p53660 Brassica napus HOM05D004431 ORTHO05D005053 2.6e-31 139.8 160 48.8
BolC5t34039H Brassica oleracea HOM05D004431 ORTHO05D005053 2.6e-31 139.8 160 48.8
Thhalv10011240m.g Eutrema salsugineum HOM05D004431 ORTHO05D005053 5.7e-31 138.7 159 50.3
AT3G13990 Arabidopsis thaliana HOM05D004431 ORTHO05D005053 7.5e-31 138.3 159 49.1
Carub.0003s1357 Capsella rubella HOM05D004431 ORTHO05D005053 9.8e-31 137.9 162 48.1
EL10Ac7g16396 Beta vulgaris HOM05D004431 ORTHO05D005053 1.7e-30 137.1 163 53.4
C03p25480 Brassica napus HOM05D004431 ORTHO05D005053 1.7e-30 137.1 144 51.4
Oeu007568.1 Olea europaea HOM05D004431 ORTHO05D005053 1.7e-30 137.1 161 52.8
C06p53980 Brassica napus HOM05D004431 ORTHO05D005053 2.2e-30 136.7 160 48.1
Sc12g0010510 Simmondsia chinensis HOM05D004431 ORTHO05D005053 3.7e-30 136.0 162 50.6
SGA_v2.0_scaffold71G23865 Striga asiatica HOM05D004431 ORTHO05D005053 6.3e-30 135.2 158 52.5
BolC1t05009H Brassica oleracea HOM05D004431 ORTHO05D005053 1.1e-29 134.4 147 54.4
BraA01t04004Z Brassica rapa HOM05D004431 ORTHO05D005053 1.1e-29 134.4 147 54.4
AUR62001498 Chenopodium quinoa HOM05D004431 ORTHO05D005053 1.4e-29 134.0 162 51.9
A05p35420 Brassica napus HOM05D004431 ORTHO05D005053 2.4e-29 133.3 161 47.8
BraA05t22352Z Brassica rapa HOM05D004431 ORTHO05D005053 2.4e-29 133.3 161 47.8
A01p39630 Brassica napus HOM05D004431 ORTHO05D005053 5.4e-29 132.1 147 53.7
AUR62009872 Chenopodium quinoa HOM05D004431 ORTHO05D005053 5.4e-29 132.1 162 51.2
Lalb_Chr01g0013561 Lupinus albus HOM05D004431 ORTHO05D005053 7.0e-29 131.7 160 52.5
Hund18691 Selenicereus undatus HOM05D004431 ORTHO05D005053 7.8e-28 128.3 161 51.6
PSO210G2002 Papaver somniferum HOM05D004431 ORTHO05D005053 5.0e-27 125.6 166 49.4
Ah.08g216670 Amaranthus hybridus HOM05D004431 ORTHO05D005053 6.6e-27 125.2 162 50.0
CARHR044560 Cardamine hirsuta HOM05D004431 ORTHO05D005053 1.1e-26 124.4 160 48.8
ClCG07G013980 Citrullus lanatus HOM05D004431 ORTHO05D005053 3.3e-26 122.9 261 34.9
CiPaw.02G136800 Carya illinoinensis HOM05D004431 ORTHO05D005053 4.3e-26 122.5 115 59.1
CARHR044540 Cardamine hirsuta HOM05D004431 ORTHO05D005053 7.3e-26 121.7 160 46.9
SalBow6G5309 Salvia bowleyana HOM05D004431 ORTHO05D005053 9.5e-26 121.3 159 48.4
SGA_v2.0_scaffold122G33330 Striga asiatica HOM05D004431 ORTHO05D005053 9.5e-26 121.3 158 48.7
PSO210G0025 Papaver somniferum HOM05D004431 ORTHO05D005053 1.6e-25 120.6 165 48.5
Lj5A38T42 Lonicera japonica HOM05D004431 ORTHO05D005053 2.8e-25 119.8 317 34.1
Peaxi162Scf00038g01825 Petunia axillaris HOM05D004431 ORTHO05D005053 3.6e-25 119.4 161 49.7
THA.LOC104810364 Tarenaya hassleriana HOM05D004431 ORTHO05D005053 6.1e-25 118.6 158 46.8
Nitab4.5_0002879g0100 Nicotiana tabacum HOM05D004431 ORTHO05D005053 8.0e-25 118.2 163 46.0
MBI19_g19956_MAGBIO Magnolia biondii HOM05D004431 ORTHO05D005053 1.0e-24 117.9 163 45.4
unitig_748.g7593 Utricularia gibba HOM05D004431 ORTHO05D005053 1.2e-23 114.4 164 50.0
BcaB04g20964 Brassica carinata HOM05D004431 ORTHO05D005053 1.5e-23 114.0 144 48.6
unitig_32.g11537 Utricularia gibba HOM05D004431 ORTHO05D005053 2.0e-23 113.6 163 49.1
C01p50590 Brassica napus HOM05D004431 ORTHO05D005053 5.8e-23 112.1 147 47.6
Hund05746 Selenicereus undatus HOM05D004431 ORTHO05D005053 1.7e-22 110.5 162 45.1
ATR0598G277 Amborella trichopoda HOM05D004431 ORTHO05D005053 6.6e-19 98.6 146 42.5
Os03g0411000 Oryza sativa ssp. japonica HOM05D004431 ORTHO05D005053 2.8e-17 93.2 168 36.3
Os06g0206100 Oryza sativa ssp. japonica HOM05D004431 ORTHO05D005053 8.1e-17 91.7 165 39.4
Zm00001eb019770 Zea mays HOM05D004431 ORTHO05D005053 6.8e-16 88.6 166 33.1
Zm00001eb278740 Zea mays HOM05D004431 ORTHO05D005053 8.9e-16 88.2 163 40.5
CDE06G2581 Ceratophyllum demersum HOM05D004431 ORTHO05D005053 3.4e-15 86.3 130 41.5
CiPaw.01G220700 Carya illinoinensis HOM05D004431 ORTHO05D005053 3.3e-10 69.7 202 28.7
Sp1g40630 Schrenkiella parvula HOM05D004431 ORTHO05D005053 1.2e-09 67.8 55 56.4
Lalb_Chr04g0261091 Lupinus albus HOM05D004431 ORTHO05D005053 1.8e-08 63.9 116 44.0
Psat7g060400 Pisum sativum HOM05D004431 ORTHO05D005053 2.6e-07 60.1 54 57.4
Psat7g060320 Pisum sativum HOM05D004431 ORTHO05D005053 3.4e-07 59.7 54 57.4
Psat7g060480 Pisum sativum HOM05D004431 ORTHO05D005053 2.2e-06 57.0 55 54.5


User provided reference genes

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