Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.3e-260 901.7 472 100.0
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.2e-171 607.1 395 78.7
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 5.1e-159 565.1 506 64.2
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 6.5e-154 548.1 443 67.3
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 3.3e-142 509.2 398 66.1
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.7e-139 499.6 403 64.5
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 6.1e-136 488.4 398 64.8
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.4e-132 477.2 404 60.9
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.2e-128 464.2 394 61.2
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.8e-127 460.3 394 59.9
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 3.0e-127 459.5 362 65.2
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 8.3e-125 451.4 410 58.3
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 9.2e-124 448.0 400 58.0
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 4.5e-123 445.7 398 57.5
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 7.8e-123 444.9 396 58.6
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 3.3e-121 439.5 396 57.3
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 2.1e-120 436.8 400 56.2
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 2.3e-119 433.3 404 55.7
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 6.8e-119 431.8 427 54.3
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 6.8e-119 431.8 404 55.0
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 7.5e-118 428.3 432 53.9
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 9.8e-118 427.9 432 53.7
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 3.7e-117 426.0 391 56.3
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 2.7e-115 419.9 400 56.0
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 4.6e-115 419.1 379 57.0
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 1.0e-114 417.9 399 53.4
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 1.3e-114 417.5 438 51.4
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 2.3e-114 416.8 404 53.2
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 6.6e-114 415.2 403 52.9
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.1e-113 414.5 421 52.5
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.2e-112 411.0 399 54.9
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 2.8e-112 409.8 395 53.9
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 2.8e-112 409.8 444 53.2
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.0e-112 408.3 402 52.5
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-111 407.9 402 52.5
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.3e-111 406.8 402 51.7
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.1e-111 406.4 440 56.4
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 4.0e-111 406.0 402 52.2
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 8.9e-111 404.8 402 52.7
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.2e-110 404.4 402 52.0
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 2.0e-110 403.7 399 52.1
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 3.7e-109 399.4 416 51.7
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 4.9e-109 399.1 438 49.8
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 6.4e-109 398.7 429 50.6
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.1e-108 397.9 417 51.8
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.4e-108 397.5 392 52.0
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.4e-108 397.5 423 51.1
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 2.4e-108 396.7 396 53.0
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.2e-107 394.4 399 53.1
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 2.1e-107 393.7 398 53.5
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.3e-106 391.0 398 53.3
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-106 390.6 438 48.2
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 6.6e-106 388.7 423 50.1
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 1.1e-105 387.9 405 51.4
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.9e-105 387.1 404 49.8
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 4.3e-105 386.0 401 48.6
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 9.5e-105 384.8 390 53.3
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 9.5e-105 384.8 400 51.5
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.4e-103 380.9 412 50.7
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 3.1e-103 379.8 399 51.1
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 4.4e-102 375.9 404 48.8
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 4.4e-102 375.9 396 51.8
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 2.2e-101 373.6 441 46.7
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.2e-101 373.6 414 47.8
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.9e-101 373.2 396 50.0
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.9e-101 373.2 414 48.6
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 2.9e-101 373.2 437 47.1
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.1e-100 371.3 414 47.8
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 3.2e-100 369.8 396 49.5
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 2.1e-99 367.1 423 47.8
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 3.9e-98 362.8 315 57.8
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 8.6e-98 361.7 397 49.4
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 8.6e-98 361.7 403 48.4
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.9e-97 360.5 403 46.9
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 3.6e-96 356.3 354 53.4
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 6.2e-96 355.5 407 47.9
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.8e-95 354.0 402 48.5
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 3.1e-95 353.2 424 47.2
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 4.0e-95 352.8 399 48.9
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.2e-94 351.3 400 48.8
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.2e-94 351.3 405 48.4
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 7.6e-94 348.6 396 50.0
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 2.2e-93 347.1 402 47.3
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 2.9e-93 346.7 398 47.7
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 2.4e-92 343.6 402 48.5
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 4.2e-92 342.8 396 47.0
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 5.4e-92 342.4 406 46.8
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 5.4e-92 342.4 397 46.3
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 9.2e-92 341.7 405 46.9
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 7.8e-91 338.6 444 46.2
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.6e-88 330.9 398 47.5
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.1e-87 328.2 605 34.4
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 5.3e-87 325.9 404 46.0
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.2e-86 324.7 423 42.6
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 4.4e-86 322.8 408 44.1
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 9.9e-86 321.6 403 45.2
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 3.8e-85 319.7 406 41.6
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 8.4e-85 318.5 434 40.1
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 5.4e-84 315.8 407 43.5
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 9.3e-84 315.1 392 43.6
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 9.3e-84 315.1 392 43.6
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 9.3e-84 315.1 392 43.6
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.2e-83 314.7 409 41.3
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.6e-83 314.3 399 43.4
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 2.1e-83 313.9 402 43.0
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 2.7e-83 313.5 407 43.0
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 4.6e-83 312.8 408 44.1
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 2.3e-82 310.5 407 40.8
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.3e-81 306.2 397 44.6
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 1.9e-76 290.8 312 49.7
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 4.2e-76 289.7 402 42.8
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-74 285.0 387 43.4
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 1.7e-69 267.7 409 42.8
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.9e-68 264.2 431 40.4
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 2.4e-63 247.3 296 47.0
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 6.9e-63 245.7 248 51.6
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.1e-57 228.4 287 45.3
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 2.5e-57 227.3 390 38.5
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 1.7e-53 214.5 219 49.8
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 6.5e-53 212.6 422 36.0
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 5.1e-50 203.0 237 48.1
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 5.7e-49 199.5 363 36.1
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.4e-47 194.9 197 47.2
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 4.1e-47 193.4 438 32.2
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 2.6e-46 190.7 450 33.3
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.6e-46 190.7 469 31.3
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.0e-45 188.7 307 38.8
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.2e-44 183.3 389 34.2
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.4e-39 168.3 312 37.5
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.4e-39 167.5 229 41.9
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.9e-36 157.9 140 55.7
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.4e-33 146.7 313 37.1
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 6.3e-32 142.9 404 30.9
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.6e-30 138.3 403 30.8
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.0e-29 133.3 404 30.0
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.6e-27 128.3 309 34.3
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.8e-26 124.8 239 36.0
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 8.8e-26 122.5 108 56.5
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.5e-25 121.7 160 46.9
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 2.8e-24 117.5 441 26.3
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 3.7e-24 117.1 157 42.0
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.4e-23 114.4 136 46.3
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-22 112.1 134 42.5
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 5.9e-22 109.8 108 52.8
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 7.7e-22 109.4 343 30.0
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 3.2e-20 104.0 185 37.3
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.7e-19 100.1 137 41.6
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 8.8e-18 95.9 83 59.0
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 7.7e-14 82.8 122 42.6
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 7.7e-14 82.8 122 42.6
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 1.0e-13 82.4 152 38.2
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.3e-13 82.0 136 36.0
Cre01.g070567 Chlamydomonas reinhardtii HOM05D004436 ORTHO05D005179 1.4e-10 72.0 434 22.4
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 3.0e-10 70.9 107 39.3
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 7.5e-09 66.2 135 36.3
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 7.5e-09 66.2 131 34.4
Ca_02098_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 4.5e-06 57.0 172 26.7


User provided reference genes

Program Settings