Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.7e-29 131.7 87 100.0
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 5.1e-20 100.9 87 82.8
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.5e-19 99.4 87 82.8
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 1.2e-18 96.3 86 77.9
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.8e-18 95.1 86 79.1
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 4.7e-18 94.4 87 79.3
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 6.2e-18 94.0 87 80.5
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 8.1e-18 93.6 86 76.7
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 2.4e-17 92.0 87 77.0
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 8.9e-17 90.1 87 75.9
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.0e-16 89.0 60 75.0
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 2.9e-15 85.1 86 73.3
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 6.4e-15 84.0 86 69.8
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.1e-14 83.2 87 72.4
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 1.1e-14 83.2 86 72.1
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.9e-14 82.4 86 72.1
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 2.4e-14 82.0 86 72.1
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.2e-14 81.6 86 72.1
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.2e-14 81.6 73 83.6
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 5.4e-14 80.9 86 69.8
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 7.1e-14 80.5 86 72.1
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 7.1e-14 80.5 86 69.8
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 9.2e-14 80.1 88 71.6
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 9.2e-14 80.1 86 69.8
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 9.2e-14 80.1 86 69.8
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 9.2e-14 80.1 86 73.3
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.2e-13 79.7 86 70.9
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.2e-13 79.7 86 70.9
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.2e-13 79.7 86 69.8
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.6e-13 79.3 75 77.3
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.6e-13 79.3 89 73.0
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.6e-13 79.3 75 80.0
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.7e-13 78.6 87 72.4
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.7e-13 78.6 87 72.4
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 3.5e-13 78.2 88 71.6
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 7.8e-13 77.0 87 73.6
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 7.8e-13 77.0 61 72.1
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.8e-13 77.0 57 68.4
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 7.8e-13 77.0 80 71.2
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.0e-12 76.6 86 70.9
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.0e-12 76.6 81 75.3
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 1.3e-12 76.3 86 69.8
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.7e-12 75.9 86 69.8
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 2.3e-12 75.5 86 69.8
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 3.0e-12 75.1 85 70.6
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 3.9e-12 74.7 80 71.2
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 6.6e-12 73.9 86 67.4
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 6.6e-12 73.9 86 65.1
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 6.6e-12 73.9 85 69.4
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 8.7e-12 73.6 89 67.4
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 8.7e-12 73.6 47 76.6
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.5e-11 72.8 86 67.4
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.9e-11 72.4 87 69.0
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 1.9e-11 72.4 83 72.3
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 2.5e-11 72.0 85 71.8
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 4.3e-11 71.2 85 71.8
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 4.3e-11 71.2 86 66.3
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 5.6e-11 70.9 80 67.5
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 5.6e-11 70.9 75 73.3
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 7.3e-11 70.5 86 67.4
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 9.6e-11 70.1 85 64.7
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 1.3e-10 69.7 73 74.0
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.3e-10 69.7 86 64.0
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.3e-10 69.7 89 51.7
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.3e-10 69.7 86 47.7
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.3e-10 69.7 83 71.1
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 1.6e-10 69.3 86 65.1
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.8e-10 68.6 87 62.1
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 3.6e-10 68.2 88 65.9
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.8e-10 67.8 87 64.4
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.8e-10 67.8 86 68.6
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 4.8e-10 67.8 86 61.6
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 8.1e-10 67.0 86 60.5
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 1.1e-09 66.6 60 58.3
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.4e-09 66.2 76 65.8
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.4e-09 66.2 48 68.8
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.8e-09 65.9 76 65.8
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.8e-09 65.9 87 58.6
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 1.8e-09 65.9 86 64.0
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.8e-09 65.9 82 67.1
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 4.0e-09 64.7 87 59.8
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 4.0e-09 64.7 77 66.2
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 5.3e-09 64.3 87 60.9
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.3e-09 64.3 87 60.9
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 5.3e-09 64.3 88 65.9
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 5.3e-09 64.3 52 65.4
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 6.9e-09 63.9 79 65.8
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.9e-09 63.9 87 60.9
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 9.0e-09 63.5 75 68.0
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.2e-08 63.2 73 71.2
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.2e-08 63.2 75 72.0
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.2e-08 63.2 86 67.4
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.6e-08 62.0 78 42.3
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 3.4e-08 61.6 79 62.0
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 3.4e-08 61.6 88 62.5
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 3.4e-08 61.6 77 58.4
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 3.4e-08 61.6 77 58.4
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 3.4e-08 61.6 63 55.6
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 3.4e-08 61.6 75 64.0
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 3.4e-08 61.6 79 64.6
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.4e-08 61.6 62 51.6
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 4.4e-08 61.2 75 49.3
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 4.4e-08 61.2 88 63.6
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 4.4e-08 61.2 89 44.9
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 4.4e-08 61.2 48 64.6
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 5.8e-08 60.8 88 40.9
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 5.8e-08 60.8 73 65.8
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 5.8e-08 60.8 59 59.3
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 5.8e-08 60.8 93 63.4
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 7.6e-08 60.5 75 44.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 7.6e-08 60.5 80 46.2
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 9.9e-08 60.1 84 46.4
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 9.9e-08 60.1 74 48.6
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 9.9e-08 60.1 62 58.1
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.3e-07 59.7 62 58.1
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 1.7e-07 59.3 86 66.3
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.7e-07 59.3 54 61.1
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.2e-07 58.9 73 72.6
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.2e-07 58.9 84 42.9
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 2.9e-07 58.5 50 60.0
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.9e-07 58.5 81 43.2
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 3.8e-07 58.2 59 59.3
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 4.9e-07 57.8 46 60.9
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 4.9e-07 57.8 62 54.8
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 6.4e-07 57.4 58 56.9
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 6.4e-07 57.4 79 40.5
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.1e-06 56.6 37 75.7
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.4e-06 56.2 60 50.0
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.9e-06 55.8 52 53.8
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 2.4e-06 55.5 49 61.2
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.4e-06 55.5 80 43.8
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 7.1e-06 53.9 86 44.2
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 7.1e-06 53.9 46 60.9
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 9.3e-06 53.5 83 41.0


User provided reference genes

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