Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0230800 Rhododendron simsii HOM05D008135 ORTHO05D010260 4.3e-66 254.6 136 100.0
vmacro18825 Vaccinium macrocarpon HOM05D008135 ORTHO05D010260 5.5e-37 157.9 135 73.3
Actinidia32128 Actinidia chinensis HOM05D008135 ORTHO05D010260 5.9e-23 111.3 80 73.8
CSS0040576 Camellia sinensis var. sinensis HOM05D008135 ORTHO05D010260 3.6e-20 102.1 65 76.9
Nitab4.5_0006071g0080 Nicotiana tabacum HOM05D008135 ORTHO05D010260 1.5e-18 96.7 56 82.1
Solyc03g121340.1 Solanum lycopersicum HOM05D008135 ORTHO05D010260 1.9e-18 96.3 58 77.6
Dinv30405 Davidia involucrata HOM05D008135 ORTHO05D010260 4.3e-18 95.1 90 62.2
Sopen03g040150 Solanum pennellii HOM05D008135 ORTHO05D010260 9.7e-18 94.0 58 75.9
ECA232G1244 Erigeron canadensis HOM05D008135 ORTHO05D010260 2.2e-17 92.8 86 60.5
Peaxi162Scf00038g01219 Petunia axillaris HOM05D008135 ORTHO05D010260 2.8e-17 92.4 85 58.8
Oeu052813.1 Olea europaea HOM05D008135 ORTHO05D010260 3.7e-17 92.0 70 64.3
Potri.001G194100 Populus trichocarpa HOM05D008135 ORTHO05D010260 1.4e-16 90.1 59 76.3
MSTRG.11003 Avicennia marina HOM05D008135 ORTHO05D010260 3.1e-16 89.0 59 71.2
Manes.04G137100 Manihot esculenta HOM05D008135 ORTHO05D010260 1.2e-15 87.0 62 74.2
Migut.I00998 Erythranthe guttata HOM05D008135 ORTHO05D010260 1.5e-15 86.7 54 77.8
Thecc.06G106900 Theobroma cacao HOM05D008135 ORTHO05D010260 1.5e-15 86.7 68 66.2
Manes.11G029100 Manihot esculenta HOM05D008135 ORTHO05D010260 2.0e-15 86.3 66 71.2
unitig_88.g27599 Utricularia gibba HOM05D008135 ORTHO05D010260 2.0e-15 86.3 59 67.8
Cfa003610 Carpinus fangiana HOM05D008135 ORTHO05D010260 2.6e-15 85.9 69 63.8
CiPaw.01G227600 Carya illinoinensis HOM05D008135 ORTHO05D010260 2.6e-15 85.9 59 74.6
DCAR_026371 Daucus carota HOM05D008135 ORTHO05D010260 3.4e-15 85.5 57 66.7
COL.COLO4_30598 Corchorus olitorius HOM05D008135 ORTHO05D010260 4.5e-15 85.1 88 58.0
Gohir.A05G133400 Gossypium hirsutum HOM05D008135 ORTHO05D010260 4.5e-15 85.1 72 59.7
Duzib235G1506 Durio zibethinus HOM05D008135 ORTHO05D010260 5.9e-15 84.7 64 67.2
Sabra01G0135100 Salix brachista HOM05D008135 ORTHO05D010260 1.0e-14 84.0 52 80.8
Actinidia21739 Actinidia chinensis HOM05D008135 ORTHO05D010260 1.3e-14 83.6 66 66.7
DCAR_007606 Daucus carota HOM05D008135 ORTHO05D010260 1.7e-14 83.2 69 60.9
Gohir.D05G135300 Gossypium hirsutum HOM05D008135 ORTHO05D010260 1.7e-14 83.2 72 58.3
Gorai.009G139100 Gossypium raimondii HOM05D008135 ORTHO05D010260 1.7e-14 83.2 72 58.3
RcHm_v2.0_Chr2g0142321 Rosa chinensis HOM05D008135 ORTHO05D010260 3.8e-14 82.0 59 69.5
Prupe.3G053100 Prunus persica HOM05D008135 ORTHO05D010260 1.1e-13 80.5 77 62.3
Nitab4.5_0004848g0120 Nicotiana tabacum HOM05D008135 ORTHO05D010260 1.4e-13 80.1 48 77.1
Cpa.g.sc131.24 Carica papaya HOM05D008135 ORTHO05D010260 5.5e-13 78.2 57 66.7
FAN05G3342 Fragaria x ananassa HOM05D008135 ORTHO05D010260 5.5e-13 78.2 59 67.8
FvH4_6g32890 Fragaria vesca HOM05D008135 ORTHO05D010260 7.2e-13 77.8 59 67.8
Glyma.08G196600 Glycine max HOM05D008135 ORTHO05D010260 1.6e-12 76.6 57 66.7
Eucgr.J02889 Eucalyptus grandis HOM05D008135 ORTHO05D010260 2.1e-12 76.3 58 67.2
Glyma.07G012900 Glycine max HOM05D008135 ORTHO05D010260 2.1e-12 76.3 90 51.1
FAN02G1144 Fragaria x ananassa HOM05D008135 ORTHO05D010260 2.7e-12 75.9 59 66.1
Phvul.010G142400 Phaseolus vulgaris HOM05D008135 ORTHO05D010260 4.7e-12 75.1 59 62.7
QL05p015762 Quercus lobata HOM05D008135 ORTHO05D010260 4.7e-12 75.1 51 70.6
TAR624G1313 Trochodendron aralioides HOM05D008135 ORTHO05D010260 7.9e-12 74.3 66 57.6
Medtr8g015560 Medicago truncatula HOM05D008135 ORTHO05D010260 1.8e-11 73.2 55 65.5
QL05p015599 Quercus lobata HOM05D008135 ORTHO05D010260 1.8e-11 73.2 60 60.0
Gohir.D10G064050 Gossypium hirsutum HOM05D008135 ORTHO05D010260 8.8e-11 70.9 59 62.7
QL05p015735 Quercus lobata HOM05D008135 ORTHO05D010260 8.8e-11 70.9 60 58.3
Gohir.A10G062350 Gossypium hirsutum HOM05D008135 ORTHO05D010260 1.1e-10 70.5 59 61.0
TAR383G0415 Trochodendron aralioides HOM05D008135 ORTHO05D010260 1.5e-10 70.1 53 67.9
Lj3g0018742 Lotus japonicus HOM05D008135 ORTHO05D010260 2.6e-10 69.3 68 55.9
Gorai.011G068000 Gossypium raimondii HOM05D008135 ORTHO05D010260 3.3e-10 68.9 59 61.0
Lalb_Chr25g0280561 Lupinus albus HOM05D008135 ORTHO05D010260 5.7e-10 68.2 58 62.1
Psat4g194640 Pisum sativum HOM05D008135 ORTHO05D010260 1.3e-09 67.0 62 59.7
arahy.Tifrunner.gnm1.ann1.4P5WGY Arachis hypogaea HOM05D008135 ORTHO05D010260 1.7e-09 66.6 58 63.8
CsaV3_7G034940 Cucumis sativus L. HOM05D008135 ORTHO05D010260 1.7e-09 66.6 58 58.6
Atru.chr1.3625 Acer truncatum HOM05D008135 ORTHO05D010260 2.2e-09 66.2 65 55.4
MELO3C024405.2 Cucumis melo HOM05D008135 ORTHO05D010260 3.7e-09 65.5 58 56.9
arahy.Tifrunner.gnm1.ann1.7STU2J Arachis hypogaea HOM05D008135 ORTHO05D010260 4.8e-09 65.1 58 63.8
ClCG09G000520 Citrullus lanatus HOM05D008135 ORTHO05D010260 4.8e-09 65.1 58 56.9
MBI01_g16574_MAGBIO Magnolia biondii HOM05D008135 ORTHO05D010260 6.3e-09 64.7 76 50.0
Sed0004354 Sechium edule HOM05D008135 ORTHO05D010260 5.3e-08 61.6 59 57.6
THA.LOC109116552 Tarenaya hassleriana HOM05D008135 ORTHO05D010260 7.0e-08 61.2 70 48.6
Aqoxy2G03851 Aquilegia oxysepala HOM05D008135 ORTHO05D010260 9.1e-08 60.8 56 58.9
Nn8g38941 Nelumbo nucifera HOM05D008135 ORTHO05D010260 3.4e-07 58.9 48 64.6
Os01g0558700 Oryza sativa ssp. japonica HOM05D008135 ORTHO05D010260 3.4e-07 58.9 71 50.7
Sc12g0009960 Simmondsia chinensis HOM05D008135 ORTHO05D010260 1.3e-06 57.0 58 55.2


User provided reference genes

Program Settings