Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 1.9e-281 971.8 494 100.0
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 2.5e-180 636.0 494 71.3
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 7.2e-180 634.4 494 71.1
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 3.6e-171 605.5 492 66.3
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 3.8e-165 585.5 490 65.1
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 1.2e-155 553.9 466 63.5
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 2.7e-142 509.6 500 57.8
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 4.4e-137 492.3 451 60.1
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 3.6e-131 472.6 505 55.0
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 2.0e-129 466.8 512 53.1
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 3.4e-129 466.1 502 55.0
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 6.9e-122 441.8 500 53.6
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 1.7e-120 437.2 503 52.7
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 3.8e-120 436.0 433 56.4
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 1.1e-119 434.5 499 50.5
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 7.4e-116 421.8 483 51.3
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 9.6e-116 421.4 492 50.6
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.1e-115 420.2 499 50.5
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 4.8e-115 419.1 504 50.8
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 1.0e-109 401.4 495 49.9
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 5.1e-109 399.1 503 50.3
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 6.7e-109 398.7 511 50.3
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 4.3e-108 396.0 508 49.6
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 1.4e-106 391.0 506 49.4
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 1.3e-101 374.4 508 48.6
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 5.1e-101 372.5 499 46.5
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 6.7e-101 372.1 497 47.5
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 1.9e-100 370.5 514 47.7
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 1.9e-100 370.5 492 47.2
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 4.3e-100 369.4 509 49.5
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 1.3e-99 367.9 517 47.2
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 3.7e-99 366.3 481 48.6
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 6.3e-99 365.5 499 46.7
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 2.4e-98 363.6 519 47.8
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 4.1e-98 362.8 514 45.9
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 5.3e-98 362.5 515 47.6
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 9.0e-98 361.7 527 46.3
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 2.9e-96 356.7 493 46.9
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 2.9e-96 356.7 516 46.1
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 6.5e-96 355.5 415 48.2
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 8.5e-96 355.1 511 46.2
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 2.5e-95 353.6 499 45.5
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 3.2e-95 353.2 499 45.3
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 4.2e-95 352.8 554 43.5
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 2.3e-93 347.1 447 49.4
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 3.9e-93 346.3 497 45.9
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 8.8e-93 345.1 522 44.4
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 4.3e-92 342.8 521 44.3
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 1.3e-91 341.3 555 42.7
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 1.8e-90 337.4 544 43.8
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 1.5e-89 334.3 561 42.4
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 1.5e-89 334.3 488 47.1
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 2.0e-89 334.0 486 46.5
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 2.6e-89 333.6 502 44.8
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 2.6e-89 333.6 456 47.1
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 3.4e-89 333.2 459 46.4
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 2.9e-88 330.1 503 44.3
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 6.5e-88 328.9 505 44.4
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 2.1e-86 323.9 521 42.6
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 3.6e-86 323.2 561 42.1
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 3.0e-85 320.1 497 43.9
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 2.8e-83 313.5 536 41.0
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 5.9e-81 305.8 453 44.2
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 1.4e-79 301.2 503 42.3
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 5.5e-79 299.3 492 43.9
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 3.6e-78 296.6 495 42.6
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 5.2e-77 292.7 499 43.3
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 5.2e-77 292.7 458 43.4
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 1.5e-76 291.2 518 40.3
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 7.4e-76 288.9 509 42.6
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 2.8e-75 287.0 509 40.3
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 6.3e-75 285.8 469 42.6
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 6.3e-75 285.8 469 42.6
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 2.4e-74 283.9 515 41.0
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 1.2e-73 281.6 502 40.0
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 2.6e-73 280.4 459 40.7
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 1.3e-72 278.1 445 42.9
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 1.1e-71 275.0 451 40.4
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 1.2e-70 271.6 514 39.3
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 4.7e-70 269.6 509 41.3
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.3e-69 267.3 509 41.5
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 3.0e-69 266.9 466 41.0
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 6.7e-69 265.8 466 41.2
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 8.8e-69 265.4 477 39.2
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.3e-68 263.5 499 41.9
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 2.2e-67 260.8 458 40.4
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 2.4e-66 257.3 460 39.6
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 4.1e-66 256.5 461 39.3
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 7.7e-65 252.3 471 39.1
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 8.5e-64 248.8 440 40.9
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.5e-63 247.3 383 41.5
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 5.5e-63 246.1 473 38.3
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 9.4e-63 245.4 480 36.9
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.6e-62 244.6 506 39.7
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 3.6e-62 243.4 478 36.6
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 1.2e-60 238.4 461 37.5
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 4.4e-60 236.5 251 53.4
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.8e-56 223.4 485 40.0
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 2.8e-54 217.2 469 37.1
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 2.6e-52 210.7 481 37.0
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 4.4e-52 209.9 456 37.3
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 4.4e-52 209.9 456 37.3
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 4.4e-52 209.9 456 37.3
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.1e-50 205.3 500 35.0
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 1.7e-48 198.0 437 35.9
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 2.7e-41 174.1 250 42.0
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 4.0e-37 160.2 511 29.7
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 4.4e-36 156.8 305 35.7
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.1e-34 152.1 496 31.5
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 1.1e-23 115.5 348 31.6
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.6e-20 104.4 231 35.1
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 3.4e-20 104.0 154 44.2
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 9.9e-20 102.4 243 34.6
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 1.7e-19 101.7 294 33.0
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.3e-08 65.5 92 45.7
Dinv11548 Davidia involucrata HOM05D065926 ORTHO05D008434 2.5e-07 61.2 64 57.8
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 4.3e-07 60.5 75 52.0
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 5.6e-07 60.1 137 35.8
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 7.3e-07 59.7 61 55.7


User provided reference genes

Program Settings