Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 6.5e-210 733.8 366 100.0
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 1.3e-173 613.2 404 78.2
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.2e-144 516.9 358 74.6
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 4.6e-139 498.4 360 71.4
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.1e-135 485.7 357 68.9
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 6.0e-131 471.5 311 77.5
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 3.0e-122 442.6 354 65.5
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 1.1e-119 434.1 345 63.5
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 2.4e-119 433.0 349 62.2
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 2.4e-116 422.9 342 63.7
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 5.5e-116 421.8 343 62.7
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 6.7e-114 414.8 346 59.5
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 2.5e-113 412.9 348 60.9
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 2.5e-113 412.9 358 60.1
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 4.3e-113 412.1 331 62.8
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 9.6e-113 411.0 348 61.8
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 2.1e-112 409.8 346 62.4
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 4.8e-112 408.7 361 58.4
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 1.8e-111 406.8 342 61.1
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.8e-111 406.8 343 60.1
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 2.4e-111 406.4 354 60.7
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 3.1e-111 406.0 361 62.0
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 5.3e-111 405.2 347 59.4
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 6.9e-111 404.8 366 59.3
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 1.5e-110 403.7 341 62.5
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 2.6e-110 402.9 361 57.9
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 4.5e-110 402.1 393 59.0
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.3e-109 400.6 338 61.8
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 2.2e-109 399.8 346 59.0
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 4.9e-109 398.7 341 59.5
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 4.9e-109 398.7 340 61.5
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 8.4e-109 397.9 345 60.0
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 1.1e-108 397.5 358 57.8
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.1e-108 397.5 361 60.1
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 1.4e-108 397.1 341 59.8
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 1.9e-108 396.7 360 59.4
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 5.5e-108 395.2 350 57.1
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 3.5e-107 392.5 343 58.0
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 5.1e-106 388.7 352 56.2
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 1.5e-105 387.1 365 57.0
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 5.7e-105 385.2 339 58.7
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 9.6e-105 384.4 351 57.3
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 1.3e-104 384.0 363 57.6
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 1.3e-104 384.0 355 56.1
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 1.6e-104 383.6 339 58.7
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 2.8e-104 382.9 338 57.7
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 3.7e-104 382.5 341 58.9
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 3.7e-104 382.5 354 57.1
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 6.3e-104 381.7 338 58.6
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 8.2e-104 381.3 343 58.6
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 1.1e-103 380.9 351 58.1
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 1.8e-103 380.2 368 56.5
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 6.9e-103 378.3 339 57.2
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 1.2e-102 377.5 358 55.3
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 2.0e-102 376.7 343 58.6
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.4e-102 375.9 357 58.3
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 1.9e-100 370.2 342 57.0
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 2.5e-100 369.8 341 58.1
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 1.6e-99 367.1 360 53.3
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 2.1e-99 366.7 347 55.6
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 1.3e-98 364.0 337 55.2
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 6.7e-98 361.7 337 56.7
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 1.5e-97 360.5 338 54.7
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 1.5e-97 360.5 338 54.7
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 4.3e-97 359.0 339 56.6
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.3e-96 357.5 357 54.6
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 6.3e-96 355.1 337 56.4
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 2.2e-93 346.7 349 56.4
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 2.2e-93 346.7 345 54.2
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 3.8e-93 345.9 363 52.6
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 5.0e-93 345.5 345 51.3
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 2.7e-91 339.7 351 52.1
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 7.9e-91 338.2 370 48.6
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 7.9e-91 338.2 294 59.9
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 1.0e-90 337.8 293 56.7
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 1.8e-90 337.0 332 53.6
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 2.3e-90 336.7 337 53.7
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 3.0e-90 336.3 334 52.7
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 3.0e-90 336.3 349 53.0
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 8.8e-90 334.7 357 48.7
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 2.6e-89 333.2 345 51.9
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 1.1e-87 327.8 356 48.9
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 6.9e-87 325.1 336 50.0
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 7.7e-86 321.6 335 50.1
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.7e-85 320.5 185 82.7
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 1.9e-84 317.0 332 51.2
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 1.9e-84 317.0 336 49.4
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 6.1e-83 312.0 338 49.4
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 3.0e-82 309.7 368 45.1
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 3.7e-80 302.8 362 45.9
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 3.7e-80 302.8 362 45.9
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 4.1e-79 299.3 336 48.5
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.0e-78 297.0 316 51.9
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 4.5e-78 295.8 263 60.8
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 2.9e-77 293.1 244 56.6
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 8.5e-77 291.6 247 59.9
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 2.7e-75 286.6 216 65.3
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 1.4e-74 284.3 281 57.3
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 9.4e-68 261.5 344 41.6
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 6.1e-67 258.8 392 40.8
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 1.4e-63 247.7 219 59.4
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 3.2e-60 236.5 316 44.3
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 5.5e-60 235.7 340 41.2
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 1.8e-58 230.7 371 35.8
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.7e-56 224.2 334 37.4
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 7.0e-47 192.2 347 37.2
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.3e-45 188.0 229 45.9
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 4.6e-38 162.9 165 54.5
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 9.5e-36 155.2 185 45.4
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 3.7e-32 143.3 222 38.3
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 3.2e-31 140.2 253 38.3
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 3.2e-23 113.6 160 41.2
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 2.1e-22 110.9 86 60.5
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 2.3e-21 107.5 93 58.1
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.2e-09 68.6 69 55.1
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 1.2e-09 68.6 172 31.4
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 1.2e-09 68.6 220 26.8
Cpa.g.sc41.10 Carica papaya HOM05D006908 ORTHO05D008662 4.5e-09 66.6 81 49.4
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 9.9e-09 65.5 206 26.2
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 1.3e-08 65.1 184 28.8
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 1.3e-08 65.1 162 29.6
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 4.9e-08 63.2 164 29.9
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 6.4e-08 62.8 194 30.9
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 8.4e-08 62.4 339 25.1
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 1.9e-07 61.2 156 26.3
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 2.4e-07 60.8 189 24.9
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 2.4e-07 60.8 184 28.8
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 4.2e-07 60.1 199 27.6
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 5.4e-07 59.7 176 29.0
Cpa.g.c43825 Carica papaya HOM05D006908 ORTHO05D008662 5.4e-07 59.7 34 79.4
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 5.4e-07 59.7 234 25.6
Cpa.g.sc41.11 Carica papaya HOM05D006908 ORTHO05D008662 7.1e-07 59.3 46 54.3
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 9.3e-07 58.9 170 30.0
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 9.3e-07 58.9 220 24.5
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 1.2e-06 58.5 176 28.4
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 1.2e-06 58.5 176 29.0
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 1.2e-06 58.5 229 26.6
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 1.2e-06 58.5 229 26.6
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 1.2e-06 58.5 163 29.4
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 1.2e-06 58.5 150 27.3
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 1.2e-06 58.5 145 31.7
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 1.2e-06 58.5 176 27.8
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 1.6e-06 58.2 176 28.4
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 1.6e-06 58.2 176 28.4
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 1.6e-06 58.2 176 29.0
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 1.6e-06 58.2 148 27.7
Cpa.g.sc1626.1 Carica papaya HOM05D006908 ORTHO05D008662 1.6e-06 58.2 50 60.0
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 1.6e-06 58.2 163 27.0
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 2.1e-06 57.8 176 28.4
MD04G1209100 Malus domestica HOM05D002553 ORTHO05D002767 2.7e-06 57.4 229 31.0
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 2.7e-06 57.4 188 25.5
RcHm_v2.0_Chr3g0454111 Rosa chinensis HOM05D002553 ORTHO05D002767 2.7e-06 57.4 252 27.8
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 3.5e-06 57.0 176 28.4
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 3.5e-06 57.0 176 30.7
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 3.5e-06 57.0 256 28.5
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 3.5e-06 57.0 306 26.8
VMungo0540G2049 Vigna mungo HOM05D002553 ORTHO05D002767 3.5e-06 57.0 251 29.1
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 4.6e-06 56.6 162 28.4
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 6.0e-06 56.2 225 25.8
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 6.0e-06 56.2 152 26.3
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 6.0e-06 56.2 180 30.6
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 6.0e-06 56.2 195 30.3
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 7.9e-06 55.8 176 28.4
CBR_g3620 Chara braunii HOM05D005677 ORTHO05D006966 7.9e-06 55.8 119 32.8
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 7.9e-06 55.8 174 25.9
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 7.9e-06 55.8 177 31.1


User provided reference genes

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