Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 5.2e-117 424.5 225 100.0
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 2.0e-89 332.8 218 83.0
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 3.6e-62 242.3 216 61.6
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.4e-45 187.2 202 57.4
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.4e-45 187.2 202 57.4
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.1e-41 173.3 216 50.9
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.7e-38 162.5 211 44.5
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 8.2e-38 161.4 218 49.5
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 6.9e-37 158.3 198 45.5
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 9.0e-37 157.9 221 48.4
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 4.5e-36 155.6 219 49.3
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 1.7e-35 153.7 165 50.9
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 2.9e-35 152.9 217 44.7
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.1e-34 151.0 220 46.8
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 3.3e-31 139.4 207 43.0
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 5.7e-31 138.7 215 40.9
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 5.7e-31 138.7 221 46.2
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 4.8e-30 135.6 208 44.7
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 4.8e-30 135.6 227 43.2
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.5e-28 130.6 166 48.2
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.0e-27 127.9 209 44.5
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.3e-27 127.5 162 45.7
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 8.5e-27 124.8 130 51.5
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 8.5e-27 124.8 217 41.0
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 8.5e-27 124.8 151 49.0
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.2e-25 120.9 190 47.9
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.2e-25 120.9 219 40.6
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.2e-25 120.9 123 53.7
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 2.1e-25 120.2 135 54.8
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.1e-25 120.2 133 54.9
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 2.1e-25 120.2 194 44.8
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 2.7e-25 119.8 130 52.3
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 6.1e-25 118.6 141 50.4
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 7.9e-25 118.2 180 45.6
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 7.9e-25 118.2 233 39.1
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.4e-24 117.5 155 49.7
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.8e-24 117.1 176 44.3
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 3.9e-24 115.9 204 37.7
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 8.8e-24 114.8 205 38.5
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.1e-23 114.4 155 48.4
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.5e-23 114.0 138 50.0
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 2.0e-23 113.6 155 44.5
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.5e-23 113.2 213 38.0
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 2.5e-23 113.2 136 49.3
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.5e-23 113.2 136 49.3
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.5e-23 113.2 155 47.7
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 3.7e-22 109.4 206 38.8
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 1.4e-21 107.5 229 36.2
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.8e-21 107.1 197 39.1
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 1.5e-20 104.0 228 35.5
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 2.0e-20 103.6 216 35.6
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.7e-19 100.5 220 35.9
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 2.9e-19 99.8 185 39.5
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 5.0e-19 99.0 226 35.4
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 8.5e-19 98.2 132 48.5
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 8.5e-19 98.2 130 46.2
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.4e-18 97.4 229 36.2
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 1.9e-18 97.1 221 34.4
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 3.2e-18 96.3 218 35.8
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 4.2e-18 95.9 174 41.4
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 4.2e-18 95.9 177 39.5
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 9.4e-18 94.7 173 41.6
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 2.1e-17 93.6 227 34.8
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 2.1e-17 93.6 227 34.8
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.1e-17 93.6 222 35.6
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 2.1e-17 93.6 231 34.6
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 2.7e-17 93.2 227 34.8
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 2.7e-17 93.2 131 44.3
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 3.6e-17 92.8 227 34.8
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 3.6e-17 92.8 224 36.6
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 7.9e-17 91.7 176 40.3
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 7.9e-17 91.7 184 37.5
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.0e-16 91.3 227 34.4
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.0e-16 91.3 198 36.9
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.8e-16 90.5 131 47.3
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.8e-16 90.5 227 35.7
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.3e-16 90.1 242 32.6
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 3.0e-16 89.7 132 43.2
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 3.0e-16 89.7 191 38.2
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 3.0e-16 89.7 123 43.9
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 6.7e-16 88.6 132 42.4
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.1e-15 87.8 210 34.8
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 2.0e-15 87.0 137 40.9
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.3e-14 84.3 143 41.3
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 1.7e-14 84.0 216 31.9
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 3.7e-14 82.8 221 34.4
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 4.8e-14 82.4 221 33.0
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 6.3e-14 82.0 227 30.4
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.3e-14 82.0 143 39.9
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 6.3e-14 82.0 143 39.9
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 1.4e-13 80.9 130 45.4
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 2.4e-13 80.1 226 29.6
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 2.4e-13 80.1 213 33.3
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 7.0e-13 78.6 216 32.9
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 9.1e-13 78.2 221 32.1
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.2e-12 77.8 213 31.5
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.2e-12 77.8 175 34.3
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.2e-12 77.8 175 34.3
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 1.2e-12 77.8 131 45.8
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 1.6e-12 77.4 131 41.2
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 2.0e-12 77.0 130 38.5
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 3.5e-12 76.3 187 33.2
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 3.5e-12 76.3 191 32.5
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 3.5e-12 76.3 186 32.3
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 3.5e-12 76.3 223 33.6
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 4.5e-12 75.9 154 35.7
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 4.5e-12 75.9 131 44.3
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 4.5e-12 75.9 236 30.5
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 5.9e-12 75.5 197 33.5
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 7.7e-12 75.1 225 32.9
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 7.7e-12 75.1 178 30.3
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.0e-11 74.7 223 30.9
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.3e-11 74.3 191 33.5
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 1.3e-11 74.3 185 30.3
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.7e-11 73.9 217 30.0
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.2e-11 73.6 201 32.8
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 2.2e-11 73.6 209 31.6
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 2.2e-11 73.6 191 30.9
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 3.8e-11 72.8 179 32.4
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 3.8e-11 72.8 181 30.9
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 5.0e-11 72.4 184 33.2
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 5.0e-11 72.4 133 39.8
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 8.5e-11 71.6 190 36.3
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.1e-10 71.2 214 30.8
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 1.9e-10 70.5 162 37.7
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 2.5e-10 70.1 205 30.7
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 5.5e-10 68.9 179 33.0
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 5.5e-10 68.9 179 33.0
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 5.5e-10 68.9 129 40.3
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 9.4e-10 68.2 138 34.1
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 1.6e-09 67.4 128 42.2
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.6e-09 67.4 135 39.3
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 2.7e-09 66.6 124 37.1
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 2.7e-09 66.6 126 35.7
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 3.6e-09 66.2 132 34.8
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 4.7e-09 65.9 142 34.5
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 8.0e-09 65.1 215 29.8
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 1.0e-08 64.7 133 33.8
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 4.0e-08 62.8 189 28.0
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 4.0e-08 62.8 176 33.0
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 6.7e-08 62.0 209 26.3
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 8.8e-08 61.6 167 34.1
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 8.8e-08 61.6 189 33.3
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 8.8e-08 61.6 209 31.1
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.1e-07 61.2 186 33.9
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.5e-07 60.8 176 33.5
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.0e-07 60.5 199 31.2
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 2.0e-07 60.5 176 31.8
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 2.0e-07 60.5 128 39.1
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 5.7e-07 58.9 131 32.1
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 7.5e-07 58.5 184 32.1
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 9.7e-07 58.2 122 32.0
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 1.3e-06 57.8 181 30.4
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 1.3e-06 57.8 174 32.2
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 2.2e-06 57.0 183 31.7
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 3.7e-06 56.2 230 26.5
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 6.3e-06 55.5 181 30.4


User provided reference genes

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