Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 0.0e+00 1392.1 732 100.0
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 4.1e-248 861.7 685 69.3
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 3.9e-198 695.7 842 53.6
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 6.5e-193 678.3 851 51.5
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 4.5e-162 575.9 770 49.0
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 7.2e-152 542.0 765 47.6
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 9.2e-139 498.4 909 41.0
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 7.5e-133 478.8 465 60.9
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.5e-122 443.4 763 42.7
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.5e-122 443.4 763 42.7
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 1.4e-115 421.4 794 39.5
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 9.2e-115 418.7 764 41.6
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.2e-114 418.3 748 41.6
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 2.3e-113 414.1 773 40.8
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.6e-113 412.5 648 44.9
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 3.5e-106 390.2 738 38.9
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.9e-105 386.7 700 41.1
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 1.1e-104 385.2 743 39.3
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 3.3e-104 383.6 774 37.9
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 8.1e-103 379.0 865 36.0
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 8.1e-103 379.0 742 38.8
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 5.8e-101 372.9 752 39.0
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 9.9e-101 372.1 840 39.0
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.8e-100 370.2 748 38.0
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 4.9e-100 369.8 752 39.4
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 1.1e-99 368.6 750 38.9
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 1.9e-99 367.9 753 37.6
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 2.7e-98 364.0 724 37.8
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 1.3e-97 361.7 781 36.9
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 5.1e-97 359.8 745 37.6
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 1.1e-96 358.6 838 36.8
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 4.3e-96 356.7 928 32.4
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 7.3e-96 355.9 764 36.9
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 7.3e-96 355.9 765 36.1
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 9.6e-96 355.5 744 37.5
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.8e-94 351.3 769 36.4
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 9.9e-93 345.5 759 35.4
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 9.3e-91 339.0 803 34.5
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 6.0e-90 336.3 763 36.0
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 7.9e-90 335.9 767 34.8
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 1.3e-89 335.1 707 38.5
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 6.7e-89 332.8 761 35.3
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 1.5e-88 331.6 743 37.8
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.3e-87 328.6 761 36.3
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 4.0e-86 323.6 738 35.4
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 3.0e-81 307.4 836 35.5
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 8.7e-81 305.8 746 34.0
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 1.1e-80 305.4 742 36.4
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 4.3e-80 303.5 856 33.1
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 2.8e-79 300.8 796 34.3
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 6.2e-79 299.7 788 33.6
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 4.1e-78 297.0 805 34.3
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 5.3e-78 296.6 767 34.4
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 1.2e-77 295.4 818 33.7
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.2e-77 295.4 707 38.5
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 2.0e-77 294.7 669 37.4
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 4.5e-77 293.5 745 35.2
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 5.8e-77 293.1 759 34.9
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 7.6e-77 292.7 771 32.4
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 2.2e-76 291.2 736 33.8
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 2.9e-76 290.8 700 36.1
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.8e-76 290.4 671 36.2
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 6.5e-76 289.7 381 49.3
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.4e-75 288.5 671 37.0
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 3.2e-75 287.3 732 33.1
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.6e-74 285.0 671 36.7
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 7.9e-74 282.7 747 35.3
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 1.0e-73 282.3 752 34.6
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 1.3e-73 282.0 775 34.6
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 4.3e-72 276.9 750 33.6
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 1.2e-69 268.9 951 28.3
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.0e-69 268.1 746 34.5
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.3e-68 265.4 750 34.0
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.9e-67 261.5 756 31.7
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 9.4e-67 259.2 765 32.0
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 3.9e-65 253.8 429 41.7
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 3.9e-65 253.8 856 30.6
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 3.7e-63 247.3 777 31.4
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 4.8e-63 246.9 732 33.9
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 5.3e-62 243.4 801 31.3
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 6.9e-62 243.0 759 32.1
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 4.5e-61 240.4 752 31.5
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 7.7e-61 239.6 938 28.3
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.5e-59 234.6 324 50.0
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 4.2e-59 233.8 694 34.6
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 7.2e-59 233.0 760 30.3
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 1.6e-58 231.9 665 32.0
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 2.7e-58 231.1 736 30.4
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 3.6e-58 230.7 356 44.1
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 6.1e-58 229.9 711 32.5
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 3.9e-57 227.3 554 35.0
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 5.1e-57 226.9 706 31.2
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.1e-56 225.7 748 32.2
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 7.4e-56 223.0 708 32.8
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 7.4e-56 223.0 682 31.1
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 9.7e-56 222.6 738 30.4
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 4.8e-55 220.3 957 27.4
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 6.3e-55 219.9 939 29.0
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 1.8e-54 218.4 769 30.3
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 1.2e-53 215.7 741 29.6
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 1.3e-52 212.2 733 30.2
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 1.7e-52 211.8 757 28.9
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.5e-51 208.8 947 26.1
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 4.2e-51 207.2 824 30.0
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 6.1e-50 203.4 613 32.8
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 8.0e-50 203.0 740 30.0
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.8e-49 201.8 791 30.2
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 8.8e-49 199.5 750 29.6
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 2.0e-48 198.4 755 29.5
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 9.7e-48 196.1 731 29.8
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 1.3e-47 195.7 756 29.8
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 3.1e-46 191.0 627 32.2
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 2.2e-44 184.9 584 31.2
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.2e-42 179.1 692 29.3
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 2.7e-42 177.9 765 29.4
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 3.6e-42 177.6 782 28.6
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 4.7e-42 177.2 751 29.7
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 2.3e-41 174.9 763 28.4
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 5.7e-40 170.2 442 33.9
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 7.5e-40 169.9 445 33.3
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.7e-34 150.6 608 28.5
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 2.3e-28 131.7 424 31.8
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 2.8e-26 124.8 815 25.4
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.5e-24 119.0 118 51.7
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 7.5e-24 116.7 858 23.5
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 9.8e-24 116.3 213 36.6
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.4e-22 112.5 298 31.2
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.6e-21 109.0 98 59.2
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 5.0e-20 104.0 157 46.5
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.5e-19 102.4 134 47.0
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.7e-18 97.4 139 42.4
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 4.0e-17 94.4 146 39.7
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 1.2e-16 92.8 148 45.9
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 1.7e-15 89.0 104 51.9
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 2.0e-13 82.0 116 43.1
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 4.6e-13 80.9 744 22.4
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.0e-12 79.7 118 42.4
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 1.1e-11 76.3 87 48.3
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 1.9e-11 75.5 109 42.2
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 3.3e-11 74.7 155 34.8
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 7.3e-11 73.6 271 27.7
Rhsim08G0120100 Rhododendron simsii HOM05D000004 ORTHO05D000002 2.8e-10 71.6 81 50.6
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 8.1e-10 70.1 69 52.2
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 4.0e-09 67.8 300 25.7
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.3e-07 62.8 88 43.2


User provided reference genes

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