Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0215300 Rhododendron simsii HOM05D007863 ORTHO05D009265 2.6e-43 178.3 92 100.0
vmacro18974 Vaccinium macrocarpon HOM05D007863 ORTHO05D009265 3.0e-23 111.7 74 82.4
CSS0005162 Camellia sinensis var. sinensis HOM05D007863 ORTHO05D009265 9.8e-14 80.1 88 59.1
Gohir.A10G075500 Gossypium hirsutum HOM05D007863 ORTHO05D009265 1.1e-12 76.6 91 50.5
Gohir.D10G076000 Gossypium hirsutum HOM05D007863 ORTHO05D009265 1.1e-12 76.6 91 51.6
Gorai.011G081800 Gossypium raimondii HOM05D007863 ORTHO05D009265 1.1e-12 76.6 91 51.6
TWI12G0528 Tripterygium wilfordii HOM05D007863 ORTHO05D009265 1.1e-12 76.6 55 72.7
Thecc.06G070300 Theobroma cacao HOM05D007863 ORTHO05D009265 2.4e-12 75.5 66 65.2
Nitab4.5_0001764g0040 Nicotiana tabacum HOM05D007863 ORTHO05D009265 3.1e-12 75.1 49 79.6
Cfa001994 Carpinus fangiana HOM05D007863 ORTHO05D009265 5.4e-12 74.3 92 53.3
Sopen03g035400 Solanum pennellii HOM05D007863 ORTHO05D009265 7.0e-12 73.9 47 80.9
CAN.G407.102 Capsicum annuum HOM05D007863 ORTHO05D009265 1.2e-11 73.2 47 80.9
CiPaw.01G245400 Carya illinoinensis HOM05D007863 ORTHO05D009265 1.2e-11 73.2 89 51.7
Prupe.3G082000 Prunus persica HOM05D007863 ORTHO05D009265 1.2e-11 73.2 90 54.4
Hma1.2p1_0515F.1_g170180 Hydrangea macrophylla HOM05D007863 ORTHO05D009265 1.6e-11 72.8 95 51.6
RcHm_v2.0_Chr2g0136401 Rosa chinensis HOM05D007863 ORTHO05D009265 1.6e-11 72.8 89 52.8
Solyc03g116510.1 Solanum lycopersicum HOM05D007863 ORTHO05D009265 1.6e-11 72.8 74 56.8
Haze_16524 Corylus avellana HOM05D007863 ORTHO05D009265 2.7e-11 72.0 88 54.5
Nitab4.5_0010254g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 2.7e-11 72.0 49 75.5
QL05p028236 Quercus lobata HOM05D007863 ORTHO05D009265 2.7e-11 72.0 74 55.4
MD17G1207500 Malus domestica HOM05D007863 ORTHO05D009265 4.5e-11 71.2 91 51.6
CANSAT56G0457 Cannabis sativa HOM05D007863 ORTHO05D009265 5.9e-11 70.9 43 81.4
Cpa.g.sc10.233 Carica papaya HOM05D007863 ORTHO05D009265 5.9e-11 70.9 49 75.5
COL.COLO4_12919 Corchorus olitorius HOM05D007863 ORTHO05D009265 7.8e-11 70.5 85 51.8
FvH4_6g30170 Fragaria vesca HOM05D007863 ORTHO05D009265 1.3e-10 69.7 51 68.6
FAN14G0247 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.3e-10 69.7 51 68.6
THA.LOC104808229 Tarenaya hassleriana HOM05D007863 ORTHO05D009265 1.3e-10 69.7 44 72.7
FAN02G1499 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.7e-10 69.3 49 69.4
FAN05G0465 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.7e-10 69.3 51 66.7
FAN09G3905 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.7e-10 69.3 51 66.7
Lj3g0006922 Lotus japonicus HOM05D007863 ORTHO05D009265 1.7e-10 69.3 82 53.7
Ciclev10027122m.g Citrus clementina HOM05D007863 ORTHO05D009265 2.9e-10 68.6 43 79.1
Rhsim12G0192500 Rhododendron simsii HOM05D007863 ORTHO05D009265 1.1e-09 66.6 48 75.0
Potri.003G062300 Populus trichocarpa HOM05D007863 ORTHO05D009265 1.9e-09 65.9 69 55.1
MBI01_g37813_MAGBIO Magnolia biondii HOM05D007863 ORTHO05D009265 2.5e-09 65.5 52 65.4
Manes.04G115800 Manihot esculenta HOM05D007863 ORTHO05D009265 2.5e-09 65.5 43 76.7
AUR62011544 Chenopodium quinoa HOM05D007863 ORTHO05D009265 3.3e-09 65.1 89 48.3
Lalb_Chr14g0373721 Lupinus albus HOM05D007863 ORTHO05D009265 3.3e-09 65.1 80 50.0
PGR102G1764 Punica granatum HOM05D007863 ORTHO05D009265 3.3e-09 65.1 49 67.3
arahy.Tifrunner.gnm1.ann1.JQ3RYK Arachis hypogaea HOM05D007863 ORTHO05D009265 9.5e-09 63.5 63 55.6
EL10Ac9g21922 Beta vulgaris HOM05D007863 ORTHO05D009265 9.5e-09 63.5 43 76.7
Manes.11G054000 Manihot esculenta HOM05D007863 ORTHO05D009265 9.5e-09 63.5 44 72.7
Psat5g301160 Pisum sativum HOM05D007863 ORTHO05D009265 2.8e-08 62.0 51 58.8
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 2.8e-08 62.0 54 61.1
Carub.0001s1516 Capsella rubella HOM05D010306 ORTHO05D009265 3.6e-08 61.6 49 65.3
TPR.G37228 Trifolium pratense HOM05D007863 ORTHO05D009265 3.6e-08 61.6 44 68.2
Ca_01070_v3 Cicer arietinum L. HOM05D007863 ORTHO05D009265 4.7e-08 61.2 44 68.2
Medtr2g103440 Medicago truncatula HOM05D007863 ORTHO05D009265 4.7e-08 61.2 74 45.9
Potri.001G171701 Populus trichocarpa HOM05D007863 ORTHO05D009265 6.1e-08 60.8 47 66.0
Thhalv10009244m.g Eutrema salsugineum HOM05D010306 ORTHO05D009265 8.0e-08 60.5 61 52.5
CARHR015920 Cardamine hirsuta HOM05D010306 ORTHO05D009265 1.4e-07 59.7 44 68.2
AL1G27490 Arabidopsis lyrata HOM05D010306 ORTHO05D009265 1.8e-07 59.3 44 68.2
Sabra03G0036200 Salix brachista HOM05D007863 ORTHO05D009265 1.8e-07 59.3 47 66.0
Atru.chr1.3052 Acer truncatum HOM05D007863 ORTHO05D009265 4.0e-07 58.2 35 82.9
DCAR_025492 Daucus carota HOM05D007863 ORTHO05D009265 4.0e-07 58.2 84 46.4
Sp1g13730 Schrenkiella parvula HOM05D010306 ORTHO05D009265 4.0e-07 58.2 44 65.9
BcaB03g14543 Brassica carinata HOM05D010306 ORTHO05D009265 5.2e-07 57.8 44 65.9
BcaC07g41504 Brassica carinata HOM05D010306 ORTHO05D009265 5.2e-07 57.8 44 65.9
A09p61440 Brassica napus HOM05D010306 ORTHO05D009265 5.2e-07 57.8 44 65.9
C08p45000 Brassica napus HOM05D010306 ORTHO05D009265 5.2e-07 57.8 44 65.9
BolC8t52046H Brassica oleracea HOM05D010306 ORTHO05D009265 5.2e-07 57.8 44 65.9
BraA09t41515Z Brassica rapa HOM05D010306 ORTHO05D009265 5.2e-07 57.8 44 65.9
Migut.I00793 Erythranthe guttata HOM05D007863 ORTHO05D009265 5.2e-07 57.8 35 77.1
Glyma.13G364100 Glycine max HOM05D007863 ORTHO05D009265 5.2e-07 57.8 69 52.2
BcaC05g25488 Brassica carinata HOM05D010306 ORTHO05D009265 8.9e-07 57.0 44 63.6
C05p13530 Brassica napus HOM05D010306 ORTHO05D009265 8.9e-07 57.0 44 63.6
BolC5t30090H Brassica oleracea HOM05D010306 ORTHO05D009265 8.9e-07 57.0 44 63.6
DCAR_016255 Daucus carota HOM05D007863 ORTHO05D009265 1.2e-06 56.6 60 53.3
A08p31600 Brassica napus HOM05D010306 ORTHO05D009265 1.5e-06 56.2 44 63.6
BraA08t35082Z Brassica rapa HOM05D010306 ORTHO05D009265 1.5e-06 56.2 44 63.6
Lj3g0003830 Lotus japonicus HOM05D007863 ORTHO05D009265 2.0e-06 55.8 74 44.6
Glyma.15G009600 Glycine max HOM05D007863 ORTHO05D009265 2.6e-06 55.5 72 45.8
Lalb_Chr04g0262451 Lupinus albus HOM05D007863 ORTHO05D009265 2.6e-06 55.5 82 45.1
Lalb_Chr25g0279481 Lupinus albus HOM05D007863 ORTHO05D009265 2.6e-06 55.5 46 63.0
TPR.G38680 Trifolium pratense HOM05D007863 ORTHO05D009265 2.6e-06 55.5 46 63.0
AT1G15385 Arabidopsis thaliana HOM05D010306 ORTHO05D009265 4.4e-06 54.7 48 58.3
Sopen03g035410 Solanum pennellii HOM05D007863 ORTHO05D009265 4.4e-06 54.7 74 43.2
BraA06t24319Z Brassica rapa HOM05D010306 ORTHO05D009265 5.7e-06 54.3 78 42.3
Medtr4g011030 Medicago truncatula HOM05D007863 ORTHO05D009265 5.7e-06 54.3 47 61.7
Aqoxy7G03727 Aquilegia oxysepala HOM05D007863 ORTHO05D009265 9.8e-06 53.5 83 41.0
Glyma.07G031800 Glycine max HOM05D007863 ORTHO05D009265 9.8e-06 53.5 45 57.8


User provided reference genes

Program Settings