Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0205700 Rhododendron simsii HOM05D007307 ORTHO05D009190 6.2e-277 956.8 484 100.0
Actinidia25480 Actinidia chinensis HOM05D007307 ORTHO05D009190 5.4e-204 714.5 483 77.6
QL05p036096 Quercus lobata HOM05D007307 ORTHO05D009190 2.2e-197 692.6 482 72.6
CSS0015248 Camellia sinensis var. sinensis HOM05D007307 ORTHO05D009190 3.5e-195 685.3 476 74.4
Peaxi162Scf00332g00525 Petunia axillaris HOM05D007307 ORTHO05D009190 6.0e-195 684.5 482 71.8
MSTRG.11181 Avicennia marina HOM05D007307 ORTHO05D009190 7.8e-195 684.1 487 72.3
Solyc03g116870.3 Solanum lycopersicum HOM05D007307 ORTHO05D009190 2.3e-194 682.6 481 71.5
Sopen03g035800 Solanum pennellii HOM05D007307 ORTHO05D009190 8.6e-194 680.6 481 71.3
Manes.04G102400 Manihot esculenta HOM05D007307 ORTHO05D009190 1.5e-193 679.9 484 72.1
PGSC0003DMG400019823 Solanum tuberosum HOM05D007307 ORTHO05D009190 7.3e-193 677.6 481 70.9
Cc04_g05100 Coffea canephora HOM05D007307 ORTHO05D009190 1.2e-192 676.8 483 70.4
GSVIVG01015957001 Vitis vinifera HOM05D007307 ORTHO05D009190 2.1e-192 676.0 484 71.5
Nitab4.5_0002568g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 4.7e-192 674.9 485 69.9
Nitab4.5_0012161g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 4.7e-192 674.9 485 70.3
Cpa.g.sc10.77 Carica papaya HOM05D007307 ORTHO05D009190 2.0e-190 669.5 489 69.7
CAN.G407.66 Capsicum annuum HOM05D007307 ORTHO05D009190 3.4e-190 668.7 497 67.8
Nn2g12391 Nelumbo nucifera HOM05D007307 ORTHO05D009190 3.4e-190 668.7 486 70.8
CiPaw.02G162300 Carya illinoinensis HOM05D007307 ORTHO05D009190 1.7e-189 666.4 484 69.8
AUR62026998 Chenopodium quinoa HOM05D007307 ORTHO05D009190 3.7e-189 665.2 481 70.5
FAN14G3907 Fragaria x ananassa HOM05D007307 ORTHO05D009190 4.1e-188 661.8 484 68.4
THA.LOC104813590 Tarenaya hassleriana HOM05D007307 ORTHO05D009190 9.2e-188 660.6 486 70.2
FvH4_6g28640 Fragaria vesca HOM05D007307 ORTHO05D009190 2.1e-187 659.4 484 68.2
Thecc.06G041700 Theobroma cacao HOM05D007307 ORTHO05D009190 2.1e-187 659.4 486 69.8
Lj5A80T58 Lonicera japonica HOM05D007307 ORTHO05D009190 3.5e-187 658.7 485 69.5
RcHm_v2.0_Chr2g0132981 Rosa chinensis HOM05D007307 ORTHO05D009190 3.5e-187 658.7 484 68.8
FAN05G4298 Fragaria x ananassa HOM05D007307 ORTHO05D009190 1.0e-186 657.1 484 68.0
ClCG09G003340 Citrullus lanatus HOM05D007307 ORTHO05D009190 1.3e-186 656.8 489 69.3
Gorai.009G123800 Gossypium raimondii HOM05D007307 ORTHO05D009190 2.3e-186 656.0 487 69.0
AUR62030838 Chenopodium quinoa HOM05D007307 ORTHO05D009190 3.0e-186 655.6 480 69.0
Eucgr.F03957 Eucalyptus grandis HOM05D007307 ORTHO05D009190 3.0e-186 655.6 489 68.7
MD17G1223300 Malus domestica HOM05D007307 ORTHO05D009190 5.1e-186 654.8 482 70.1
FAN09G0915 Fragaria x ananassa HOM05D007307 ORTHO05D009190 8.6e-186 654.1 485 67.8
Gohir.D05G120300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 8.6e-186 654.1 487 69.0
Prupe.3G098200 Prunus persica HOM05D007307 ORTHO05D009190 8.6e-186 654.1 482 70.5
CDE04G0143 Ceratophyllum demersum HOM05D007307 ORTHO05D009190 7.3e-185 651.0 488 67.6
CsaV3_7G031890 Cucumis sativus L. HOM05D007307 ORTHO05D009190 7.3e-185 651.0 484 70.5
SalBow7G3293 Salvia bowleyana HOM05D007307 ORTHO05D009190 7.3e-185 651.0 460 72.6
Potri.001G044300 Populus trichocarpa HOM05D007307 ORTHO05D009190 9.5e-185 650.6 490 69.6
Aa31LG7G560 Aethionema arabicum HOM05D007307 ORTHO05D009190 1.6e-184 649.8 486 69.1
Ca_20542_v3 Cicer arietinum L. HOM05D007307 ORTHO05D009190 1.6e-184 649.8 428 73.1
Duzib192G1050 Durio zibethinus HOM05D007307 ORTHO05D009190 4.7e-184 648.3 484 69.0
Glyma.07G023000 Glycine max HOM05D007307 ORTHO05D009190 6.2e-184 647.9 428 74.8
Glyma.08G218800 Glycine max HOM05D007307 ORTHO05D009190 6.2e-184 647.9 478 69.7
Medtr4g007080 Medicago truncatula HOM05D007307 ORTHO05D009190 1.8e-183 646.4 444 71.4
Psat7g260240 Pisum sativum HOM05D007307 ORTHO05D009190 6.8e-183 644.4 488 66.4
MELO3C023468.2 Cucumis melo HOM05D007307 ORTHO05D009190 8.9e-183 644.0 484 69.4
Haze_16668 Corylus avellana HOM05D007307 ORTHO05D009190 1.2e-182 643.7 494 67.4
Sed0012177 Sechium edule HOM05D007307 ORTHO05D009190 1.5e-182 643.3 488 69.5
Ciclev10025544m.g Citrus clementina HOM05D007307 ORTHO05D009190 2.6e-182 642.5 484 67.6
EL10Ac3g06300 Beta vulgaris HOM05D007307 ORTHO05D009190 3.4e-182 642.1 475 68.4
TAR625G0746 Trochodendron aralioides HOM05D007307 ORTHO05D009190 3.4e-182 642.1 484 67.1
ECA246G2038 Erigeron canadensis HOM05D007307 ORTHO05D009190 7.6e-182 641.0 486 65.6
TPR.G23084 Trifolium pratense HOM05D007307 ORTHO05D009190 9.9e-182 640.6 448 70.3
Lj3g0010338 Lotus japonicus HOM05D007307 ORTHO05D009190 1.3e-181 640.2 444 70.9
Migut.I00693 Erythranthe guttata HOM05D007307 ORTHO05D009190 2.9e-181 639.0 484 67.6
Phvul.010G161300 Phaseolus vulgaris HOM05D007307 ORTHO05D009190 3.8e-181 638.6 422 74.9
HanXRQChr08g0235871 Helianthus annuus HOM05D007307 ORTHO05D009190 8.4e-181 637.5 488 67.2
CARHR016480 Cardamine hirsuta HOM05D007307 ORTHO05D009190 1.4e-180 636.7 487 69.0
PSO170G4955 Papaver somniferum HOM05D007307 ORTHO05D009190 1.4e-180 636.7 489 67.9
Thhalv10007586m.g Eutrema salsugineum HOM05D007307 ORTHO05D009190 2.4e-180 636.0 488 69.5
Carub.0001s1578 Capsella rubella HOM05D007307 ORTHO05D009190 3.2e-180 635.6 491 69.0
Atru.chr10.2412 Acer truncatum HOM05D007307 ORTHO05D009190 5.4e-180 634.8 483 67.5
VMungo0331G1235 Vigna mungo HOM05D007307 ORTHO05D009190 5.4e-180 634.8 428 73.4
PSO017G5597 Papaver somniferum HOM05D007307 ORTHO05D009190 9.2e-180 634.0 489 67.5
unitig_52.g17476 Utricularia gibba HOM05D007307 ORTHO05D009190 9.2e-180 634.0 423 72.6
Oeu051583.2 Olea europaea HOM05D007307 ORTHO05D009190 1.6e-179 633.3 392 79.3
AT1G15980 Arabidopsis thaliana HOM05D007307 ORTHO05D009190 1.3e-178 630.2 488 68.6
AL1G28140 Arabidopsis lyrata HOM05D007307 ORTHO05D009190 1.1e-177 627.1 489 68.3
Sp1g14290 Schrenkiella parvula HOM05D007307 ORTHO05D009190 1.1e-177 627.1 487 68.0
Lsat_1_v5_gn_5_8240 Lactuca sativa HOM05D007307 ORTHO05D009190 4.3e-177 625.2 488 65.2
Sabra01G0030600 Salix brachista HOM05D007307 ORTHO05D009190 4.3e-177 625.2 532 62.8
TWI18G0485 Tripterygium wilfordii HOM05D007307 ORTHO05D009190 4.3e-177 625.2 474 66.5
BcaB02g06649 Brassica carinata HOM05D007307 ORTHO05D009190 5.6e-177 624.8 488 67.4
Hma1.2p1_0109F.1_g052560 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 5.6e-177 624.8 482 67.8
Aqoxy7G01916 Aquilegia oxysepala HOM05D007307 ORTHO05D009190 4.7e-176 621.7 481 66.5
BcaC05g25617 Brassica carinata HOM05D007307 ORTHO05D009190 1.4e-175 620.2 495 66.5
A06p12000 Brassica napus HOM05D007307 ORTHO05D009190 1.4e-175 620.2 495 66.7
BraA06t24371Z Brassica rapa HOM05D007307 ORTHO05D009190 1.4e-175 620.2 495 66.7
CANSAT56G3714 Cannabis sativa HOM05D007307 ORTHO05D009190 4.0e-175 618.6 506 64.2
ATR0739G128 Amborella trichopoda HOM05D007307 ORTHO05D009190 1.2e-174 617.1 484 65.5
C05p14190 Brassica napus HOM05D007307 ORTHO05D009190 1.2e-174 617.1 495 66.3
Lalb_Chr25g0278871 Lupinus albus HOM05D007307 ORTHO05D009190 3.8e-173 612.1 461 67.7
FAN02G3759 Fragaria x ananassa HOM05D007307 ORTHO05D009190 1.0e-170 604.0 422 69.9
arahy.Tifrunner.gnm1.ann1.X6E8D2 Arachis hypogaea HOM05D007307 ORTHO05D009190 6.4e-165 584.7 484 63.0
Dinv23284 Davidia involucrata HOM05D007307 ORTHO05D009190 3.2e-164 582.4 404 74.3
DCAR_017649 Daucus carota HOM05D007307 ORTHO05D009190 6.0e-163 578.2 431 69.4
Zm00001eb176730 Zea mays HOM05D007307 ORTHO05D009190 9.9e-158 560.8 419 64.4
Os08g0276100 Oryza sativa ssp. japonica HOM05D007307 ORTHO05D009190 7.1e-156 554.7 422 63.5
Zm00001eb412420 Zea mays HOM05D007307 ORTHO05D009190 1.3e-152 543.9 419 63.2
Gohir.A05G119300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 1.9e-148 530.0 408 66.4
COL.COLO4_26702 Corchorus olitorius HOM05D007307 ORTHO05D009190 2.8e-136 489.6 329 74.8
arahy.Tifrunner.gnm1.ann1.DFM3I4 Arachis hypogaea HOM05D007307 ORTHO05D009190 6.5e-133 478.4 484 55.8
BolC5t30150H Brassica oleracea HOM05D007307 ORTHO05D009190 1.3e-128 464.2 359 66.6
Ah.01g006960 Amaranthus hybridus HOM05D007307 ORTHO05D009190 4.2e-124 449.1 477 53.9
AagrBONN_evm.TU.Sc2ySwM_344.2748 Anthoceros agrestis HOM05D007307 ORTHO05D009190 1.1e-116 424.5 416 54.8
Pp3c9_19250 Physcomitrium patens HOM05D007307 ORTHO05D009190 2.7e-115 419.9 425 50.8
SMO364G0491 Selaginella moellendorffii HOM05D007307 ORTHO05D009190 1.0e-114 417.9 413 50.4
Pp3c15_23280 Physcomitrium patens HOM05D007307 ORTHO05D009190 8.2e-112 408.3 424 50.2
Mapoly0114s0017 Marchantia polymorpha HOM05D007307 ORTHO05D009190 4.5e-102 375.9 425 47.3
CBR_g34729 Chara braunii HOM05D007307 ORTHO05D009190 2.6e-89 333.6 417 42.7
Hma1.2p1_0109F.1_g052570 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 1.7e-72 277.7 213 66.7
Hund06518 Selenicereus undatus HOM05D007307 ORTHO05D009190 5.1e-69 266.2 187 70.6
SEGI_02712 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 1.1e-63 248.4 200 61.0
SEGI_37660 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 1.1e-63 248.4 200 61.0
SEGI_25940 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 4.5e-49 199.9 155 60.0
Actinidia18248 Actinidia chinensis HOM05D007307 ORTHO05D009190 1.3e-24 118.6 84 72.6
Lj5A80T54 Lonicera japonica HOM05D007307 ORTHO05D009190 1.7e-19 101.7 61 75.4


User provided reference genes

Program Settings