Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 4.7e-219 764.2 381 100.0
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 4.1e-167 591.7 385 77.4
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 4.1e-167 591.7 387 78.8
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 4.6e-150 535.0 384 72.4
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.7e-149 533.1 386 71.8
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 8.7e-149 530.8 391 71.9
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 1.5e-148 530.0 384 71.6
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 1.5e-148 530.0 385 71.4
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 3.3e-148 528.9 386 71.8
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 1.3e-147 526.9 385 71.7
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.1e-147 526.2 390 70.5
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 2.8e-147 525.8 387 70.3
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.8e-146 523.1 377 73.5
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 9.0e-146 520.8 390 71.0
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.3e-144 516.9 388 70.1
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 1.3e-144 516.9 381 69.8
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 2.2e-144 516.2 384 71.9
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 2.9e-144 515.8 388 69.8
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 4.9e-144 515.0 385 70.1
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.1e-143 513.8 386 69.9
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.4e-143 513.5 386 69.9
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 1.9e-143 513.1 375 71.5
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 3.2e-143 512.3 392 69.1
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 1.6e-142 510.0 318 79.6
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 2.1e-142 509.6 348 73.3
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 4.6e-142 508.4 354 72.9
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 6.0e-142 508.1 368 72.3
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 7.9e-142 507.7 350 73.7
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 3.0e-141 505.8 351 72.1
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 3.0e-141 505.8 383 69.2
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 3.0e-141 505.8 383 69.5
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 5.1e-141 505.0 387 68.2
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 6.7e-141 504.6 371 69.5
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 8.7e-141 504.2 375 69.9
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.5e-140 503.4 379 68.6
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.9e-140 503.1 376 69.4
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 1.9e-140 503.1 323 75.5
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.9e-140 503.1 375 69.3
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 2.5e-140 502.7 351 71.2
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 2.5e-140 502.7 372 68.3
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 3.3e-140 502.3 353 71.4
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 3.3e-140 502.3 390 67.9
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 7.4e-140 501.1 384 68.0
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 7.4e-140 501.1 380 68.4
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 9.6e-140 500.7 353 71.4
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 1.6e-139 500.0 348 71.3
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 2.1e-139 499.6 325 76.0
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 2.8e-139 499.2 353 70.8
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 3.7e-139 498.8 389 68.1
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 4.8e-139 498.4 371 69.5
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 4.8e-139 498.4 348 71.0
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 4.8e-139 498.4 368 68.8
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.1e-138 497.3 376 70.5
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 1.1e-138 497.3 353 71.4
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.4e-138 496.9 367 68.1
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 2.4e-138 496.1 348 70.7
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 2.4e-138 496.1 366 70.8
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 6.9e-138 494.6 367 67.8
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 9.0e-138 494.2 391 66.2
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 9.0e-138 494.2 353 71.1
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.5e-137 493.4 392 67.6
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.5e-137 493.4 389 66.8
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 2.6e-137 492.7 370 67.3
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 3.4e-137 492.3 365 70.1
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 3.4e-137 492.3 371 68.5
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 3.4e-137 492.3 350 69.7
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 4.5e-137 491.9 390 66.4
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 4.5e-137 491.9 347 70.9
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 5.8e-137 491.5 372 67.7
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 9.9e-137 490.7 381 66.7
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 8.4e-136 487.6 353 70.5
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.1e-135 487.3 392 65.6
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.9e-135 486.5 392 65.6
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 1.2e-134 483.8 330 73.0
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 1.3e-133 480.3 319 74.3
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 1.8e-133 479.9 369 67.8
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 6.7e-133 478.0 364 69.0
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.5e-132 476.9 388 64.7
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 4.3e-132 475.3 382 63.6
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.1e-131 473.0 365 68.5
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 4.0e-130 468.8 394 64.0
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 5.8e-129 464.9 371 63.6
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 5.7e-124 448.4 344 69.5
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 2.4e-122 443.0 276 79.0
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 5.3e-122 441.8 264 87.1
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 2.1e-118 429.9 279 77.1
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 5.1e-117 425.2 383 60.8
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 4.8e-115 418.7 268 77.2
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 1.2e-113 414.1 315 64.8
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 1.5e-113 413.7 393 59.3
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 7.7e-113 411.4 267 77.5
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 1.3e-107 394.0 320 61.6
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 3.1e-106 389.4 318 61.3
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.5e-105 387.1 384 54.2
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 7.7e-105 384.8 268 69.0
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 5.5e-103 378.6 309 66.0
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 3.6e-102 375.9 272 69.5
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 2.1e-94 350.1 296 66.9
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.4e-93 347.4 289 65.7
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.8e-93 347.1 270 67.0
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 2.8e-91 339.7 290 63.4
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 2.9e-80 303.1 260 62.3
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.9e-79 300.4 267 64.0
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 2.0e-73 280.4 324 43.8
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 2.0e-73 280.4 324 43.8
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 2.7e-73 280.0 339 48.4
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 1.8e-69 267.3 311 46.6
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.6e-68 263.5 154 82.5
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 6.0e-65 252.3 336 42.0
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 5.0e-64 249.2 166 75.3
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 3.4e-60 236.5 130 86.9
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 3.5e-57 226.5 197 61.9
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 1.2e-54 218.0 206 59.2
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 9.9e-36 155.2 100 72.0
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 2.1e-33 147.5 402 33.1
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 5.6e-31 139.4 75 85.3
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 1.8e-29 134.4 79 79.7
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 3.7e-22 110.2 74 70.3
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.1e-21 108.6 90 64.4
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 1.4e-18 98.2 107 54.2
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.1e-17 94.4 103 51.5
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 3.5e-17 93.6 75 65.3
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 7.9e-17 92.4 105 51.4
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 2.5e-15 87.4 104 51.0
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 4.3e-15 86.7 57 73.7
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.3e-15 86.7 63 68.3
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 9.6e-15 85.5 60 61.7
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 9.6e-15 85.5 60 61.7
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 3.1e-13 80.5 47 80.9
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 5.3e-13 79.7 286 27.3
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 5.3e-13 79.7 95 48.4
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 5.8e-12 76.3 105 49.5
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 1.9e-10 71.2 98 50.0
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 1.9e-10 71.2 103 44.7
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 5.5e-10 69.7 280 26.1
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 5.5e-10 69.7 274 26.3
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 2.1e-09 67.8 294 25.5
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 2.7e-09 67.4 75 49.3
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 6.1e-09 66.2 303 26.1
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 6.1e-09 66.2 318 23.6
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 7.9e-09 65.9 277 25.3
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 7.9e-09 65.9 314 22.9
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 7.9e-09 65.9 277 25.6
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.3e-08 65.1 288 25.7
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.3e-08 65.1 292 25.7
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 2.3e-08 64.3 277 24.9
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 2.3e-08 64.3 33 84.8
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 2.3e-08 64.3 292 25.7
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 3.0e-08 63.9 277 24.5
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 5.1e-08 63.2 287 25.1
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 5.1e-08 63.2 284 23.6
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 5.1e-08 63.2 340 25.9
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 6.7e-08 62.8 279 25.4
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 6.7e-08 62.8 300 26.0
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 6.7e-08 62.8 284 23.9
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 8.7e-08 62.4 285 23.9
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 8.7e-08 62.4 279 26.2
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 8.7e-08 62.4 284 23.2
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.1e-07 62.0 301 25.6
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 1.5e-07 61.6 276 22.8
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 1.5e-07 61.6 280 24.3
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 1.5e-07 61.6 290 25.9
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 1.9e-07 61.2 306 24.2
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.9e-07 61.2 290 25.2
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 2.5e-07 60.8 42 69.0
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 3.3e-07 60.5 282 24.1
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 3.3e-07 60.5 274 24.1
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 4.3e-07 60.1 291 22.3
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 5.7e-07 59.7 283 25.1
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 9.7e-07 58.9 274 24.8
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 9.7e-07 58.9 289 24.6
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 1.3e-06 58.5 277 24.9
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 1.6e-06 58.2 282 23.4
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 2.2e-06 57.8 301 24.3
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 2.2e-06 57.8 278 23.7
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 3.7e-06 57.0 277 24.9
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 6.3e-06 56.2 273 24.2
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 6.3e-06 56.2 274 24.5
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 8.2e-06 55.8 257 24.9


User provided reference genes

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