Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 0.0e+00 1303.5 654 100.0
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 4.5e-254 881.3 677 67.9
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 3.8e-253 878.2 676 69.5
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 5.9e-246 854.4 508 84.3
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 3.3e-241 838.6 672 65.8
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.6e-211 740.0 459 80.2
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 1.5e-209 733.4 682 57.5
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 1.3e-208 730.3 680 57.4
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 2.0e-206 723.0 677 56.6
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 8.9e-202 707.6 683 55.5
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 1.9e-199 699.9 681 56.2
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 2.4e-199 699.5 675 56.9
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 3.2e-199 699.1 673 55.1
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 3.0e-197 692.6 678 54.6
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 4.3e-196 688.7 678 54.4
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 7.3e-196 688.0 689 54.1
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 1.8e-194 683.3 672 55.2
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 9.2e-191 671.0 678 53.5
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 4.6e-190 668.7 664 54.5
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 1.2e-187 660.6 611 56.5
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 1.8e-186 656.8 676 52.5
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 4.0e-186 655.6 685 51.7
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 1.2e-185 654.1 724 51.4
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 2.0e-185 653.3 680 52.6
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 3.8e-184 649.0 663 52.3
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 2.7e-182 642.9 680 51.0
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 1.3e-181 640.6 713 50.6
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 8.6e-181 637.9 660 52.7
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.1e-180 637.5 678 50.9
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 7.3e-180 634.8 680 51.3
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 8.1e-179 631.3 679 51.5
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 1.1e-178 630.9 665 50.8
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 1.1e-178 630.9 661 51.3
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.4e-178 629.8 664 51.1
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 1.2e-177 627.5 680 50.7
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 2.9e-176 622.9 681 51.0
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 9.3e-175 617.8 613 53.2
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 2.1e-174 616.7 676 49.4
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 3.0e-173 612.8 661 50.1
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 5.1e-173 612.1 674 50.9
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 2.5e-172 609.8 686 49.4
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 3.3e-172 609.4 694 50.1
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 4.3e-172 609.0 680 49.9
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 2.1e-171 606.7 681 50.1
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 8.1e-171 604.7 680 49.3
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 2.4e-170 603.2 681 49.6
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 3.1e-170 602.8 682 49.6
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 1.2e-169 600.9 773 45.9
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 4.9e-168 595.5 686 49.0
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 5.4e-167 592.0 692 47.5
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 1.2e-166 590.9 802 44.4
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 2.1e-166 590.1 688 48.1
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 2.1e-166 590.1 686 48.0
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 4.6e-166 589.0 598 52.5
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 1.0e-165 587.8 687 47.9
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 1.8e-165 587.0 676 48.8
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 1.5e-164 583.9 683 47.9
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.3e-163 580.9 687 47.5
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 1.3e-163 580.9 686 47.5
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 1.4e-162 577.4 693 48.6
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 2.4e-162 576.6 611 51.2
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 4.0e-162 575.9 525 55.6
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 4.0e-162 575.9 684 48.1
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 9.0e-162 574.7 616 51.3
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 7.6e-161 571.6 503 57.3
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 5.5e-159 565.5 684 49.1
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.6e-158 563.9 609 50.9
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 6.2e-155 552.0 460 62.0
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 1.3e-147 527.7 684 45.8
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 4.5e-145 519.2 550 54.2
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 1.4e-143 514.2 425 61.2
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 7.2e-143 511.9 690 43.2
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 7.2e-143 511.9 682 43.1
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 2.8e-139 500.0 570 48.6
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 2.2e-136 490.3 676 43.9
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 5.7e-132 475.7 720 43.1
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 9.4e-127 458.4 695 42.3
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 1.1e-124 451.4 612 43.0
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 4.4e-124 449.5 732 38.7
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 1.1e-122 444.9 678 40.9
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.3e-120 438.0 717 39.7
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 8.0e-118 428.7 262 81.7
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 7.5e-116 422.2 507 47.5
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 2.4e-114 417.2 725 37.7
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.1e-106 391.7 819 36.8
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.0e-104 385.2 708 38.0
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 7.3e-95 352.4 670 37.3
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 4.7e-94 349.7 578 40.1
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 8.0e-94 349.0 707 36.6
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 8.0e-94 349.0 578 40.1
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 1.9e-90 337.8 390 50.5
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 2.7e-89 334.0 456 42.5
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 7.3e-79 299.3 487 40.9
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 4.3e-71 273.5 262 55.0
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 2.8e-70 270.8 262 52.7
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 1.9e-58 231.5 520 31.5
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 2.0e-52 211.5 382 39.8
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 6.0e-49 199.9 408 35.3
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 7.4e-47 193.0 196 52.6
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 5.3e-45 186.8 414 34.8
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.6e-36 157.9 167 47.3
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 1.2e-33 149.1 198 47.5
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 7.9e-33 146.4 201 41.8
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 5.7e-31 140.2 199 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 5.0e-27 127.1 297 30.6
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 3.9e-24 117.5 135 50.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 6.7e-24 116.7 111 50.5
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 3.1e-21 107.8 114 43.9
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 2.2e-19 101.7 170 37.1
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 6.1e-17 93.6 141 42.6
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 5.1e-16 90.5 84 52.4
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 5.3e-13 80.5 96 43.8
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 1.7e-11 75.5 135 39.3
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 7.2e-10 70.1 209 28.7


User provided reference genes

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