Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.0e-103 379.0 184 100.0
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 9.5e-77 290.4 189 75.1
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.2e-76 290.0 184 75.5
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.5e-74 283.1 184 75.0
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 6.4e-73 277.7 185 74.1
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 7.1e-72 274.2 184 73.9
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.8e-68 262.3 188 70.7
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 4.7e-68 261.5 196 67.3
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 1.1e-67 260.4 185 68.6
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 6.8e-67 257.7 188 68.6
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 1.2e-66 256.9 188 68.6
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.4e-66 255.0 188 68.1
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 6.4e-65 251.1 184 66.3
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 8.4e-65 250.8 185 67.0
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 5.4e-64 248.1 188 67.6
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.6e-63 246.5 190 63.7
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.7e-63 245.7 153 75.2
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 2.7e-63 245.7 184 67.4
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 6.0e-63 244.6 188 65.4
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 6.0e-63 244.6 189 66.7
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 7.8e-63 244.2 189 65.6
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.7e-62 243.0 180 66.7
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.7e-62 243.0 175 69.1
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 3.9e-62 241.9 222 57.7
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.9e-62 241.9 188 63.8
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.9e-62 241.9 188 63.8
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 3.9e-62 241.9 165 70.3
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 6.6e-62 241.1 185 67.0
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 6.6e-62 241.1 189 64.0
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 6.6e-62 241.1 186 68.3
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 8.7e-62 240.7 188 63.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.5e-61 239.2 184 66.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 3.3e-61 238.8 184 65.8
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 5.6e-61 238.0 192 62.5
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 5.6e-61 238.0 186 64.5
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 7.3e-61 237.7 184 65.8
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 9.6e-61 237.3 184 65.2
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.3e-60 236.9 184 66.3
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.3e-60 236.9 190 63.7
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.3e-60 236.9 183 64.5
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.6e-60 236.5 187 63.6
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.8e-60 235.7 184 63.6
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 2.8e-60 235.7 186 63.4
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.8e-60 235.7 184 66.3
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.6e-60 235.3 184 65.2
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 4.8e-60 235.0 188 62.2
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 8.1e-60 234.2 153 71.9
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.4e-59 233.4 183 63.9
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 2.4e-59 232.6 185 61.6
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.1e-59 232.3 196 58.7
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.1e-59 232.3 194 63.4
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 5.3e-59 231.5 186 62.4
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 6.9e-59 231.1 184 60.9
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 6.9e-59 231.1 191 62.8
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 9.0e-59 230.7 189 62.4
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.2e-58 230.3 185 62.7
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 3.4e-58 228.8 184 62.0
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 3.4e-58 228.8 193 60.1
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.8e-58 228.0 150 72.7
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 5.8e-58 228.0 189 59.8
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 7.6e-58 227.6 191 61.8
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.3e-57 226.9 189 60.8
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.7e-57 226.5 186 60.8
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 1.7e-57 226.5 185 60.5
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.7e-57 226.5 185 59.5
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.9e-57 225.7 191 60.7
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 3.8e-57 225.3 191 61.8
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 6.4e-57 224.6 185 60.5
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 6.4e-57 224.6 185 60.0
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.4e-57 224.6 191 60.7
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.4e-57 224.6 191 60.2
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 6.4e-57 224.6 184 60.9
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 8.4e-57 224.2 181 61.3
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.1e-56 223.8 186 60.8
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.1e-56 223.8 187 61.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.4e-56 223.4 184 60.3
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.4e-56 223.4 154 70.1
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 1.9e-56 223.0 226 55.8
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.4e-56 222.6 185 58.9
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 2.4e-56 222.6 199 58.3
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 3.2e-56 222.2 189 61.4
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.2e-56 222.2 187 62.0
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 4.2e-56 221.9 154 70.1
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 7.1e-56 221.1 130 74.6
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.3e-56 220.7 161 72.7
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 9.3e-56 220.7 198 58.6
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-55 220.3 184 60.3
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.6e-55 219.9 184 60.9
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 2.7e-55 219.2 180 60.0
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 3.5e-55 218.8 184 58.2
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 4.6e-55 218.4 184 59.2
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 6.0e-55 218.0 130 73.1
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 7.9e-55 217.6 185 62.2
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.0e-54 217.2 186 59.7
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.3e-54 216.9 184 59.8
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.3e-54 216.9 195 57.9
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.3e-54 216.9 186 58.6
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 3.0e-54 215.7 190 58.9
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 3.0e-54 215.7 185 58.4
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 3.9e-54 215.3 182 59.3
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.1e-54 214.9 161 68.9
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 6.6e-54 214.5 160 66.2
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 6.6e-54 214.5 197 58.4
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 1.5e-53 213.4 163 65.0
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 5.6e-53 211.5 186 61.3
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 7.3e-53 211.1 202 55.9
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 9.6e-53 210.7 174 61.5
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 3.6e-52 208.8 189 57.1
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.6e-52 208.8 131 75.6
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.8e-51 206.5 185 57.3
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 2.4e-51 206.1 247 47.0
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.2e-50 203.8 194 55.7
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.6e-50 202.6 158 61.4
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 4.5e-50 201.8 115 78.3
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 9.9e-50 200.7 271 43.5
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 2.2e-49 199.5 167 63.5
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.9e-49 199.1 129 69.8
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 2.4e-48 196.1 186 57.5
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 2.4e-48 196.1 185 54.6
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.0e-46 190.7 117 72.6
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 8.7e-46 187.6 129 68.2
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.6e-44 183.3 118 69.5
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 9.0e-43 177.6 128 65.6
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.3e-38 163.7 123 60.2
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.9e-37 159.8 124 60.5
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 3.3e-37 159.1 125 56.0
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.4e-35 152.9 87 75.9
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.3e-33 147.1 132 60.6
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.3e-33 147.1 107 68.2
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-32 144.1 133 62.4
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.3e-29 132.5 86 69.8
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 3.7e-28 129.0 116 53.4
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 4.8e-28 128.6 80 73.8
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.1e-27 127.5 79 69.6
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.2e-26 124.0 72 76.4
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 2.6e-26 122.9 72 70.8
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 3.9e-22 109.0 65 69.2
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 7.4e-21 104.8 113 43.4
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 3.7e-20 102.4 112 52.7
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 8.2e-20 101.3 102 44.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 9.1e-19 97.8 60 73.3
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.7e-12 77.0 91 51.6
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 6.5e-09 65.1 35 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.6e-07 60.5 58 46.6


User provided reference genes

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