Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.7e-151 539.3 269 100.0
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.0e-135 485.3 248 88.7
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 5.0e-135 484.6 248 88.7
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.9e-130 468.0 239 89.5
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 4.6e-128 461.5 249 83.1
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 2.5e-126 455.7 249 83.1
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 2.5e-126 455.7 251 81.7
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 3.3e-126 455.3 249 82.7
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.6e-125 451.8 251 82.5
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 8.1e-125 450.7 249 82.7
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.0e-124 448.4 249 83.5
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 4.0e-124 448.4 249 81.5
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 8.9e-124 447.2 257 80.2
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.0e-123 446.0 250 81.6
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 3.4e-123 445.3 250 81.2
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 9.8e-123 443.7 250 81.2
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 2.9e-122 442.2 250 80.4
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 6.4e-122 441.0 250 80.4
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 6.4e-122 441.0 247 80.2
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.1e-121 440.3 250 80.8
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.1e-121 440.3 249 80.3
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 2.4e-121 439.1 249 79.5
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 4.1e-121 438.3 250 79.6
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 9.2e-121 437.2 250 80.4
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.1e-120 436.0 250 79.6
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 3.5e-120 435.3 250 80.0
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.3e-119 433.3 250 77.6
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 6.6e-119 431.0 250 78.4
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 8.6e-119 430.6 248 77.8
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.1e-118 430.3 249 77.5
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.1e-118 430.3 250 77.6
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.5e-118 429.1 250 77.2
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 2.5e-118 429.1 250 78.4
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.5e-118 429.1 255 78.4
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 4.3e-118 428.3 250 77.2
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.6e-118 427.9 250 77.6
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.6e-118 427.9 250 78.0
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 7.3e-118 427.6 249 77.1
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 9.5e-118 427.2 250 77.6
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 9.5e-118 427.2 250 77.6
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.1e-117 426.0 250 78.0
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 2.1e-117 426.0 255 78.0
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 2.1e-117 426.0 250 78.8
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.8e-117 425.6 250 78.8
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.8e-117 425.6 252 78.2
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 3.6e-117 425.2 250 78.8
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 3.6e-117 425.2 250 78.4
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 3.6e-117 425.2 250 77.2
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 4.7e-117 424.9 250 78.8
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 6.2e-117 424.5 250 78.0
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.1e-116 423.7 250 78.8
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.1e-116 423.7 251 77.7
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.1e-116 423.7 250 76.0
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.8e-116 422.9 252 76.6
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.3e-116 422.5 250 78.0
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 4.0e-116 421.8 250 76.0
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 5.2e-116 421.4 250 78.0
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 8.9e-116 420.6 250 77.2
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.5e-115 419.9 242 77.7
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.5e-115 419.9 250 75.6
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 2.0e-115 419.5 250 75.2
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 2.6e-115 419.1 251 78.1
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 4.4e-115 418.3 251 75.7
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 5.8e-115 417.9 250 76.0
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 1.3e-114 416.8 250 76.0
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 6.4e-114 414.5 250 75.6
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.1e-113 413.7 217 86.2
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.4e-113 413.3 250 74.4
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 3.2e-113 412.1 250 76.0
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 4.1e-113 411.8 263 73.4
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 5.4e-113 411.4 253 73.9
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 7.1e-113 411.0 253 73.9
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.2e-112 410.2 253 73.5
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.2e-112 410.2 248 73.8
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 1.6e-112 409.8 252 73.4
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 3.5e-112 408.7 253 73.5
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 4.6e-112 408.3 248 73.4
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.3e-111 406.8 253 75.5
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.7e-111 406.4 250 75.2
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 2.3e-111 406.0 209 87.1
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 2.3e-111 406.0 248 73.8
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 3.9e-111 405.2 253 72.7
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 3.9e-111 405.2 250 73.2
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 5.1e-111 404.8 247 72.1
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 8.6e-111 404.1 249 75.1
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.5e-110 403.3 262 71.0
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 5.6e-110 401.4 250 75.2
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 5.6e-110 401.4 250 76.0
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 8.1e-109 397.5 251 72.9
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.1e-108 395.6 270 70.4
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.6e-107 392.5 268 70.1
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 7.6e-107 391.0 222 78.4
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.7e-106 389.8 253 71.5
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 3.8e-106 388.7 250 71.6
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 4.9e-106 388.3 250 71.6
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 8.4e-106 387.5 250 70.8
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 8.4e-106 387.5 243 72.8
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.4e-105 386.7 250 71.2
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 3.2e-105 385.6 250 71.2
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 5.4e-105 384.8 250 71.2
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 7.1e-105 384.4 204 84.3
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.7e-104 382.5 249 69.9
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.0e-103 380.6 249 70.3
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.7e-103 379.8 249 72.7
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 3.0e-103 379.0 247 69.6
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 6.6e-103 377.9 222 75.7
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.9e-102 376.3 229 71.6
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.8e-101 372.5 221 78.7
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 6.2e-101 371.3 285 65.3
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 2.4e-100 369.4 229 70.7
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 5.8e-99 364.8 274 63.9
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 7.1e-97 357.8 219 68.0
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 9.3e-97 357.5 252 67.5
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 2.7e-96 355.9 235 67.7
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 4.6e-96 355.1 221 72.4
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.0e-95 352.4 223 66.8
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 5.1e-95 351.7 219 68.0
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 5.6e-94 348.2 220 66.8
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.1e-93 346.3 217 67.3
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 6.4e-90 334.7 192 78.1
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 8.7e-87 324.3 271 60.9
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 6.2e-85 318.2 164 84.1
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.4e-84 316.2 250 61.2
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 6.9e-84 314.7 231 65.4
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 6.5e-82 308.1 264 60.2
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.5e-81 306.2 317 53.3
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 2.3e-79 299.7 215 57.7
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 2.3e-79 299.7 161 82.6
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.1e-76 288.9 170 70.6
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 4.2e-73 278.9 162 79.6
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.2e-65 252.7 163 74.8
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.6e-64 248.8 139 80.6
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.2e-61 240.0 138 76.8
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.5e-57 226.5 199 56.3
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.3e-53 214.2 203 54.7
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 4.2e-49 199.1 119 75.6
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.2e-45 186.8 107 78.5
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.2e-37 160.2 103 75.7
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.4e-30 136.3 80 81.2
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 8.6e-26 121.7 67 73.1
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 9.5e-25 118.2 72 73.6
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 3.6e-24 116.3 80 65.0
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 9.8e-22 108.2 54 83.3
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.2e-20 103.2 65 64.6
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 3.0e-18 96.7 57 73.7
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.4e-15 87.8 57 68.4
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 1.5e-14 84.3 89 50.6
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 2.9e-13 80.1 83 48.2
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.9e-12 77.4 43 72.1
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 3.2e-12 76.6 80 48.8
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 4.6e-11 72.8 52 67.3
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 5.6e-09 65.9 50 64.0
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.2e-08 62.4 58 53.4
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 1.5e-06 57.8 158 28.5
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 2.0e-06 57.4 40 65.0
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.6e-06 57.0 40 65.0


User provided reference genes

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