Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 2.4e-202 708.8 395 100.0
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 1.4e-165 586.6 398 86.2
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 6.7e-152 541.2 405 71.6
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 8.7e-152 540.8 401 79.1
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 1.5e-151 540.0 395 77.2
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 1.9e-151 539.7 400 78.0
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 2.5e-151 539.3 401 74.1
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 3.3e-151 538.9 413 78.5
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 7.4e-151 537.7 402 77.1
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 2.8e-150 535.8 413 78.2
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 1.5e-148 530.0 405 75.1
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 2.6e-148 529.3 408 77.2
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 7.6e-148 527.7 402 79.1
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 9.9e-148 527.3 403 75.9
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 3.8e-147 525.4 403 75.9
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 4.9e-147 525.0 402 69.2
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 8.4e-147 524.2 422 74.9
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 8.4e-147 524.2 401 69.1
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 8.4e-147 524.2 401 69.1
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 1.1e-146 523.9 386 76.4
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 1.1e-146 523.9 416 70.2
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 1.1e-146 523.9 388 76.8
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.4e-146 523.5 408 77.7
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 1.9e-146 523.1 419 72.1
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 4.2e-146 521.9 413 70.2
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 7.1e-146 521.2 388 78.1
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 2.1e-145 519.6 405 71.9
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 3.0e-144 515.8 405 72.1
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 5.1e-144 515.0 393 76.1
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 1.1e-143 513.8 398 75.9
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 1.9e-143 513.1 421 73.6
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 2.5e-143 512.7 398 68.6
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 3.3e-143 512.3 405 72.6
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 3.3e-143 512.3 401 71.1
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.3e-142 510.4 396 76.5
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 1.6e-142 510.0 406 71.4
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 2.8e-142 509.2 393 77.6
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 3.7e-142 508.8 418 74.4
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 4.8e-142 508.4 376 77.7
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 1.4e-141 506.9 407 75.2
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 1.6e-137 493.4 412 63.8
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 2.1e-137 493.0 412 71.8
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 3.9e-136 488.8 400 68.2
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 3.3e-135 485.7 402 71.1
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 3.3e-135 485.7 429 63.9
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 7.4e-135 484.6 403 68.0
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 9.7e-135 484.2 415 68.9
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.3e-134 483.8 410 69.0
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 2.8e-134 482.6 445 59.3
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 8.2e-134 481.1 411 72.7
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 1.1e-133 480.7 371 77.1
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 6.9e-133 478.0 403 70.5
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 6.9e-133 478.0 410 72.4
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.0e-132 476.5 412 69.7
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 3.4e-132 475.7 416 69.0
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.9e-132 474.9 408 70.6
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 5.9e-132 474.9 364 69.2
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 5.9e-132 474.9 402 66.4
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.7e-131 473.4 417 68.6
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 8.5e-131 471.1 419 69.0
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.1e-130 470.7 415 68.7
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 1.1e-130 470.7 412 70.6
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 1.4e-128 463.8 424 67.9
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 6.7e-128 461.5 422 66.6
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 7.4e-127 458.0 394 63.2
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 3.7e-126 455.7 416 63.0
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 4.1e-125 452.2 405 68.6
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 9.1e-125 451.1 403 66.5
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.5e-124 450.3 392 59.7
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 1.5e-124 450.3 382 66.0
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.0e-124 449.9 392 60.2
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 2.6e-124 449.5 408 69.1
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 5.9e-124 448.4 379 72.3
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 9.4e-122 441.0 403 66.3
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 1.2e-121 440.7 403 67.0
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 3.6e-121 439.1 344 69.5
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 4.7e-121 438.7 400 61.5
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 7.9e-121 438.0 418 59.6
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 7.9e-121 438.0 418 59.6
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 1.0e-120 437.6 405 67.4
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 5.1e-120 435.3 412 67.2
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 5.1e-120 435.3 387 62.3
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 1.5e-119 433.7 417 65.0
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 2.6e-119 433.0 404 60.9
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 2.6e-119 433.0 404 60.9
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 2.6e-119 433.0 419 60.1
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 5.7e-119 431.8 417 64.5
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 5.7e-119 431.8 417 64.5
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 6.3e-118 428.3 359 72.7
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 8.2e-118 427.9 421 64.4
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 3.1e-117 426.0 421 63.9
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 3.1e-117 426.0 313 71.6
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 5.3e-117 425.2 408 60.0
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 2.0e-116 423.3 414 58.5
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 2.6e-116 422.9 385 69.1
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 3.4e-116 422.5 382 59.7
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 1.7e-115 420.2 363 66.4
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 3.8e-115 419.1 405 66.7
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 1.4e-114 417.2 421 58.9
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 8.0e-113 411.4 336 70.2
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 3.9e-112 409.1 314 72.3
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 8.2e-110 401.4 423 58.2
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 7.0e-109 398.3 367 61.0
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 2.6e-108 396.4 401 57.6
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 2.2e-107 393.3 396 60.1
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.2e-107 393.3 396 59.3
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 5.0e-107 392.1 379 58.6
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 5.0e-107 392.1 349 62.5
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 1.1e-106 391.0 410 60.7
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.1e-105 386.7 408 60.3
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 2.7e-105 386.3 413 55.4
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.6e-105 386.0 396 56.1
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 6.7e-104 381.7 338 58.6
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.8e-102 375.6 424 56.8
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 3.7e-94 349.4 391 54.5
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 1.4e-93 347.4 393 62.1
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.5e-90 336.7 364 53.0
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 3.3e-90 336.3 444 47.1
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 1.6e-89 334.0 382 51.3
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 6.1e-89 332.0 345 51.3
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 1.7e-86 323.9 403 52.4
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 4.9e-86 322.4 330 50.6
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 1.2e-81 307.8 167 85.0
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 3.6e-81 306.2 179 78.8
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 2.6e-79 300.1 335 49.3
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.3e-75 287.7 311 47.9
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 7.3e-74 282.0 365 50.4
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 1.4e-72 277.7 291 63.2
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 2.6e-71 273.5 290 64.8
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 2.6e-71 273.5 282 63.8
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 3.4e-63 246.5 142 83.1
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 6.6e-59 232.3 252 56.0
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 2.5e-58 230.3 125 86.4
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 4.3e-58 229.6 151 80.1
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 3.0e-51 206.8 124 79.0
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 4.9e-46 189.5 113 72.6
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 4.2e-45 186.4 340 35.9
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.2e-44 184.9 171 56.7
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 5.8e-39 166.0 147 66.0
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 5.8e-39 166.0 99 79.8
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 2.6e-31 140.6 260 35.8
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 3.5e-28 130.2 100 66.0
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 2.6e-15 87.4 83 51.8
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 9.4e-13 79.0 38 89.5
unitig_61.g26223 Utricularia gibba HOM05D005199 ORTHO05D006277 1.0e-06 58.9 59 55.9
unitig_0.g1098 Utricularia gibba HOM05D005199 ORTHO05D006277 2.9e-06 57.4 72 47.2


User provided reference genes

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