Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.1e-127 459.9 225 100.0
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 6.5e-112 407.5 232 88.4
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 5.2e-85 318.2 236 68.2
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 5.3e-61 238.4 180 62.8
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 4.9e-59 231.9 184 60.3
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 2.1e-54 216.5 229 49.3
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 6.2e-54 214.9 227 49.8
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 2.4e-53 213.0 220 52.3
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.1e-53 212.6 225 49.8
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 5.3e-53 211.8 225 49.8
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 5.3e-53 211.8 225 49.8
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 1.5e-52 210.3 210 51.0
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 7.6e-52 208.0 225 49.8
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 7.6e-52 208.0 230 51.3
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 7.6e-52 208.0 210 51.9
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 9.9e-52 207.6 209 51.7
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 9.9e-52 207.6 221 50.2
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 9.9e-52 207.6 214 48.6
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 3.8e-51 205.7 225 50.2
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 3.8e-51 205.7 183 54.1
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 6.4e-51 204.9 154 66.2
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 6.4e-51 204.9 222 51.4
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 8.4e-51 204.5 230 50.4
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 8.4e-51 204.5 221 49.3
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 3.2e-50 202.6 177 54.2
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 5.5e-50 201.8 146 64.4
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 5.5e-50 201.8 218 47.7
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 7.1e-50 201.4 211 49.3
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 7.1e-50 201.4 183 51.4
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 7.1e-50 201.4 244 44.7
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 9.3e-50 201.1 223 49.3
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 1.2e-49 200.7 216 50.9
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 1.2e-49 200.7 216 50.9
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 1.2e-49 200.7 186 54.3
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.6e-49 200.3 228 48.2
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.6e-49 200.3 223 50.2
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 1.6e-49 200.3 222 48.6
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 3.5e-49 199.1 172 54.1
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 3.5e-49 199.1 172 54.1
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 3.5e-49 199.1 224 49.6
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 4.6e-49 198.7 186 53.8
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 6.0e-49 198.4 220 47.3
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 1.0e-48 197.6 154 64.9
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 1.0e-48 197.6 226 49.1
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 3.0e-48 196.1 209 49.8
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 3.9e-48 195.7 226 48.7
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 3.9e-48 195.7 227 42.3
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 5.1e-48 195.3 211 48.8
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 6.7e-48 194.9 245 45.7
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 1.1e-47 194.1 223 48.0
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 1.1e-47 194.1 228 48.2
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.9e-47 193.4 161 57.8
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 2.5e-47 193.0 223 47.5
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.5e-47 193.0 217 47.0
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.5e-47 193.0 179 53.6
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 3.3e-47 192.6 224 48.2
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 3.3e-47 192.6 227 50.2
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 4.3e-47 192.2 235 46.8
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 9.6e-47 191.0 223 47.1
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 9.6e-47 191.0 167 52.7
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 1.6e-46 190.3 212 49.1
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 1.6e-46 190.3 234 47.0
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 4.8e-46 188.7 215 47.9
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 6.2e-46 188.3 160 55.6
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 1.4e-45 187.2 153 58.2
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 4.0e-45 185.7 172 54.1
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 5.3e-45 185.3 220 46.8
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 5.3e-45 185.3 225 46.7
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 5.3e-45 185.3 164 53.0
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 9.0e-45 184.5 220 46.4
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 9.0e-45 184.5 220 46.4
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 2.0e-44 183.3 223 47.5
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 2.0e-44 183.3 226 43.4
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.0e-44 183.3 225 45.3
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.0e-44 183.3 225 45.3
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 2.0e-44 183.3 225 45.3
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 3.4e-44 182.6 220 45.5
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 3.4e-44 182.6 220 45.5
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 7.6e-44 181.4 159 53.5
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 3.8e-43 179.1 221 45.2
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 2.1e-41 173.3 232 44.4
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 2.3e-40 169.9 149 51.7
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 2.5e-39 166.4 183 46.4
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 4.3e-39 165.6 149 49.7
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 9.6e-39 164.5 207 44.9
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.8e-38 162.9 166 49.4
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 8.2e-38 161.4 166 48.8
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 2.4e-37 159.8 177 47.5
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 2.6e-36 156.4 176 44.3
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.5e-33 146.0 127 52.0
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 6.7e-32 141.7 138 56.5
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.1e-31 141.0 156 42.3
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 2.5e-31 139.8 143 52.4
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 4.3e-31 139.0 158 41.8
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 5.7e-31 138.7 164 47.6
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 5.7e-31 138.7 143 53.8
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 1.3e-30 137.5 140 53.6
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 2.2e-30 136.7 147 51.0
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 3.7e-30 136.0 159 50.9
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 8.2e-30 134.8 70 82.9
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.4e-29 134.0 159 50.3
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 1.4e-29 134.0 151 51.0
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 1.8e-29 133.7 145 52.4
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 2.4e-29 133.3 128 50.0
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 4.1e-29 132.5 149 53.0
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 5.3e-29 132.1 145 51.7
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 1.2e-28 131.0 151 49.7
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 7.7e-28 128.3 142 52.1
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 2.9e-27 126.3 137 52.6
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 7.9e-25 118.2 87 66.7
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 6.7e-24 115.2 75 69.3
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 2.0e-23 113.6 112 50.0
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 4.3e-23 112.5 143 37.1
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 1.7e-22 110.5 226 31.0
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 1.7e-22 110.5 80 53.8
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 7.9e-17 91.7 84 54.8
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 5.7e-15 85.5 82 51.2
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 1.2e-09 67.8 69 47.8
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 3.6e-09 66.2 175 26.9
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 3.0e-08 63.2 77 40.3


User provided reference genes

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