Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 4.5e-297 1023.8 524 100.0
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 4.1e-282 974.2 528 93.9
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 9.5e-255 883.2 528 84.7
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 3.0e-248 861.7 528 83.3
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 2.5e-247 858.6 537 81.6
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 5.8e-244 847.4 528 81.1
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 3.2e-242 841.6 528 81.6
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 2.6e-236 822.0 528 79.0
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 3.4e-236 821.6 528 79.0
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 2.2e-235 818.9 528 78.6
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 2.9e-235 818.5 537 78.0
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.8e-229 799.3 544 75.4
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 3.1e-229 798.5 526 76.2
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.3e-227 793.1 529 76.6
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 2.9e-227 792.0 528 75.0
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 1.2e-225 786.6 528 74.2
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 2.7e-225 785.4 529 74.7
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.3e-224 783.1 528 73.9
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 2.3e-224 782.3 529 75.8
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.6e-224 780.4 528 75.2
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 1.9e-223 779.2 528 75.0
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.9e-223 779.2 528 73.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 2.5e-223 778.9 528 73.3
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 2.5e-223 778.9 528 74.4
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 5.6e-223 777.7 528 74.2
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.2e-222 776.5 528 74.8
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 1.1e-221 773.5 528 73.9
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 1.4e-221 773.1 528 73.9
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 6.9e-221 770.8 487 80.3
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.9e-221 770.4 533 73.9
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 8.9e-221 770.4 528 72.5
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 2.0e-220 769.2 528 72.2
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.0e-220 769.2 528 73.3
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 9.9e-220 766.9 528 74.6
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.7e-219 766.1 527 73.8
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.2e-219 765.8 528 74.1
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 2.9e-219 765.4 528 73.7
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 3.8e-219 765.0 528 73.5
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 8.4e-219 763.8 528 73.9
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 1.9e-218 762.7 528 72.5
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 4.2e-218 761.5 528 73.3
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 5.4e-218 761.1 528 73.5
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 1.6e-217 759.6 528 72.7
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 3.5e-217 758.4 528 72.9
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.3e-216 756.5 528 72.9
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.7e-216 756.1 533 71.7
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 2.3e-216 755.7 528 72.3
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 3.9e-216 755.0 528 72.5
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 6.6e-216 754.2 528 72.2
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 8.7e-216 753.8 528 72.7
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 8.7e-216 753.8 528 72.2
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.9e-215 752.7 524 71.8
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 2.5e-215 752.3 532 72.2
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 4.3e-215 751.5 525 71.4
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 4.3e-215 751.5 530 72.8
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 4.3e-215 751.5 528 72.2
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 6.2e-214 747.7 528 72.2
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 8.1e-214 747.3 530 71.7
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 1.1e-213 746.9 526 71.7
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.1e-213 746.9 532 72.2
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 9.0e-213 743.8 525 71.0
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 5.8e-212 741.1 528 70.5
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 6.4e-211 737.6 529 70.7
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 9.3e-210 733.8 526 71.5
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 2.7e-209 732.3 529 68.6
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.6e-209 731.5 524 69.7
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 6.0e-209 731.1 528 70.3
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 6.0e-209 731.1 528 69.9
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 1.5e-207 726.5 524 69.1
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 5.6e-207 724.5 529 69.2
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 7.4e-207 724.2 527 70.2
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 1.6e-206 723.0 529 69.0
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 4.0e-205 718.4 529 69.4
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 2.0e-204 716.1 528 68.6
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 2.0e-204 716.1 528 67.6
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 5.8e-204 714.5 524 67.6
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 5.8e-204 714.5 528 67.6
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.1e-202 710.3 528 67.4
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.2e-201 706.8 528 66.7
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 1.6e-201 706.4 528 68.9
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 6.0e-201 704.5 527 70.4
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.8e-200 703.0 528 66.5
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 8.7e-200 700.7 526 66.0
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 8.7e-200 700.7 526 66.0
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.1e-199 700.3 522 66.7
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 1.5e-199 699.9 525 66.3
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.8e-197 693.0 526 64.8
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.8e-197 693.0 526 64.8
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 6.9e-197 691.0 526 65.0
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 2.0e-196 689.5 526 66.2
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 2.0e-196 689.5 526 66.2
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 2.2e-195 686.0 526 66.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 6.5e-195 684.5 551 64.6
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.1e-194 683.7 526 65.8
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.1e-194 683.7 526 65.8
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 3.0e-192 675.6 526 65.6
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 5.1e-192 674.9 526 64.3
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 2.4e-189 666.0 458 73.1
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 4.1e-189 665.2 526 63.5
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 8.5e-187 657.5 527 63.4
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 7.9e-185 651.0 527 63.8
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 7.9e-185 651.0 527 63.8
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.7e-184 647.5 545 64.0
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 7.4e-183 644.4 527 62.2
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 9.7e-183 644.0 527 62.8
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.7e-179 633.3 504 64.1
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 4.2e-178 628.6 528 61.6
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 7.9e-177 624.4 524 62.0
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 5.1e-176 621.7 528 60.0
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 6.3e-174 614.8 530 59.6
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.1e-170 604.0 474 65.2
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 3.5e-164 582.4 417 70.0
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 5.5e-162 575.1 592 53.2
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 2.7e-161 572.8 529 55.2
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 3.8e-155 552.4 491 58.5
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.5e-143 513.8 529 51.0
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 7.0e-141 505.0 422 61.4
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.7e-140 503.1 519 50.5
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 2.8e-137 493.0 526 49.8
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 5.2e-136 488.8 421 61.5
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.6e-132 477.2 345 69.6
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.3e-131 473.4 514 48.6
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.1e-130 471.1 312 75.6
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 3.2e-117 426.4 423 55.8
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 4.4e-111 406.0 479 49.7
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.1e-96 358.2 341 58.7
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 4.0e-88 329.7 374 46.0
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 1.1e-77 295.0 519 35.3
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.1e-74 285.0 507 39.6
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 6.3e-65 252.7 160 77.5
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 1.4e-64 251.5 508 29.9
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 4.7e-60 236.5 160 70.6
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 1.3e-46 191.8 578 28.7
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.2e-41 174.5 125 70.4
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.2e-39 168.7 151 60.3
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 6.5e-38 162.9 218 48.6
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 3.7e-33 147.1 136 59.6
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 6.3e-33 146.4 113 64.6
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 3.5e-31 140.6 102 66.7
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 2.7e-23 114.4 210 37.1
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.2e-20 105.5 65 76.9
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 2.1e-20 104.8 93 60.2
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 6.4e-17 93.2 118 46.6
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.1e-13 82.4 122 41.0
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 4.7e-12 77.0 79 55.7
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 3.4e-10 70.9 101 44.6
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 3.2e-08 64.3 67 55.2


User provided reference genes

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