Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 6.0e-166 587.4 292 100.0
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 1.6e-139 499.6 285 86.3
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 6.2e-139 497.7 285 86.7
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 1.8e-138 496.1 285 85.6
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 8.4e-136 487.3 270 87.0
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 1.1e-135 486.9 270 87.0
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 3.2e-135 485.3 270 87.4
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 2.7e-134 482.3 270 87.0
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 3.9e-133 478.4 276 83.3
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 2.4e-130 469.2 261 85.8
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 3.1e-130 468.8 285 81.4
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 6.9e-130 467.6 259 87.3
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 9.0e-130 467.2 272 83.8
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 9.0e-130 467.2 276 83.0
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 2.0e-129 466.1 283 84.1
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 2.0e-129 466.1 259 86.5
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 2.6e-129 465.7 297 80.1
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 3.4e-129 465.3 280 81.4
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 4.5e-129 464.9 261 85.4
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 4.5e-129 464.9 257 87.9
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 7.6e-129 464.2 272 84.2
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.0e-128 463.8 250 90.4
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.0e-128 463.8 277 81.2
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 1.0e-128 463.8 285 78.9
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 1.7e-128 463.0 276 82.2
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 2.9e-128 462.2 314 74.8
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 5.0e-128 461.5 276 80.8
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 6.5e-128 461.1 270 84.4
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 1.4e-127 459.9 285 80.0
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 2.5e-127 459.1 259 85.3
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 9.3e-127 457.2 268 84.0
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 1.6e-126 456.4 270 81.9
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 2.1e-126 456.1 270 83.7
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 2.1e-126 456.1 270 83.7
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 3.6e-126 455.3 281 80.4
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 3.6e-126 455.3 260 86.2
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 7.9e-126 454.1 276 80.8
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 1.0e-125 453.8 257 83.7
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 1.0e-125 453.8 290 75.5
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 1.0e-125 453.8 285 78.6
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 2.3e-125 452.6 259 83.4
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 2.3e-125 452.6 257 85.2
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 2.3e-125 452.6 274 81.4
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 3.0e-125 452.2 259 83.4
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 3.9e-125 451.8 285 78.6
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 8.7e-125 450.7 289 77.5
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 8.7e-125 450.7 270 80.7
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 1.1e-124 450.3 273 80.2
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 1.1e-124 450.3 274 79.9
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 1.9e-124 449.5 270 80.4
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 1.9e-124 449.5 274 81.0
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 3.3e-124 448.7 259 82.2
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 7.4e-124 447.6 285 77.9
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 7.4e-124 447.6 282 78.4
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.3e-123 446.8 275 78.9
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.6e-123 446.4 274 75.9
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.6e-123 446.4 297 75.4
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 2.8e-123 445.7 270 81.9
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 3.7e-123 445.3 269 81.4
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 6.3e-123 444.5 261 78.9
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 6.3e-123 444.5 274 75.9
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 8.2e-123 444.1 267 79.8
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 8.2e-123 444.1 270 77.0
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 2.4e-122 442.6 285 76.8
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 2.4e-122 442.6 275 77.8
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 3.1e-122 442.2 260 82.3
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 4.1e-122 441.8 306 72.9
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 9.0e-122 440.7 276 79.3
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 1.2e-121 440.3 259 79.5
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 1.5e-121 439.9 280 77.5
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 2.0e-121 439.5 259 82.2
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 2.0e-121 439.5 260 79.2
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 4.5e-121 438.3 266 81.2
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 4.5e-121 438.3 260 78.5
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 7.7e-121 437.6 261 80.5
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 7.7e-121 437.6 327 68.8
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 1.0e-120 437.2 261 78.2
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 1.7e-120 436.4 260 78.5
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 2.2e-120 436.0 276 75.7
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 2.9e-120 435.6 259 81.5
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.9e-120 435.6 271 78.6
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 5.0e-120 434.9 274 78.1
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 2.5e-119 432.6 259 80.7
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 2.5e-119 432.6 267 79.0
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 4.2e-119 431.8 270 76.7
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 4.2e-119 431.8 279 76.3
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 9.4e-119 430.6 272 77.2
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 9.4e-119 430.6 368 64.4
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 1.2e-118 430.3 268 75.7
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 3.6e-118 428.7 275 74.9
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 1.0e-117 427.2 262 76.7
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 1.4e-117 426.8 268 76.5
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 1.8e-117 426.4 274 75.5
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 3.0e-117 425.6 279 74.9
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 6.7e-117 424.5 281 75.8
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 8.8e-117 424.1 287 76.7
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 3.4e-113 412.1 260 77.3
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.0e-112 410.6 325 66.2
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 6.5e-112 407.9 274 71.2
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 9.4e-111 404.1 260 73.1
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 4.7e-110 401.7 271 74.2
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 7.9e-110 401.0 280 68.9
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 2.0e-108 396.4 263 71.1
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 1.7e-107 393.3 268 72.4
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 1.0e-104 384.0 222 83.8
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 6.5e-104 381.3 307 65.5
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 2.3e-101 372.9 215 84.2
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.2e-97 360.5 226 78.3
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 7.7e-97 357.8 280 66.4
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 7.7e-97 357.8 274 64.6
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 2.9e-96 355.9 207 83.1
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 7.2e-95 351.3 263 63.1
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 2.6e-92 342.8 195 85.1
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.6e-92 342.8 188 88.3
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.2e-89 334.0 198 80.3
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 5.0e-88 328.6 267 59.6
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 4.2e-87 325.5 223 72.6
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 1.2e-86 323.9 257 61.9
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 1.0e-80 304.3 188 78.7
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 1.0e-80 304.3 188 78.7
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 8.6e-72 274.6 216 61.6
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 1.2e-70 270.8 256 54.3
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 3.6e-70 269.2 210 67.1
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.1e-61 241.1 183 63.9
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 1.7e-59 233.8 149 75.2
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 2.9e-59 233.0 147 79.6
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 5.4e-58 228.8 296 49.3
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 1.6e-57 227.3 264 48.5
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 1.3e-56 224.2 194 54.6
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 1.6e-49 200.7 120 79.2
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 6.9e-45 185.3 190 51.6
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 1.7e-35 154.1 274 38.3
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 4.2e-34 149.4 211 40.3
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 7.1e-34 148.7 96 72.9
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 3.8e-27 126.3 116 56.9
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 7.1e-26 122.1 86 65.1
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 1.9e-15 87.4 89 51.7
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 6.9e-13 79.0 61 62.3
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 4.2e-10 69.7 42 76.2


User provided reference genes

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