Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 1.3e-16 89.4 77 100.0
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 9.1e-13 76.6 75 60.0
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 1.4e-10 69.3 74 67.6
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 2.5e-10 68.6 37 89.2
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 4.2e-10 67.8 38 86.8
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 4.2e-10 67.8 34 100.0
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 5.5e-10 67.4 72 70.8
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 5.5e-10 67.4 72 56.9
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 7.2e-10 67.0 72 55.6
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 1.2e-09 66.2 74 67.6
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 1.2e-09 66.2 38 84.2
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 1.2e-09 66.2 38 84.2
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 2.1e-09 65.5 33 100.0
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 2.1e-09 65.5 74 68.9
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 2.7e-09 65.1 35 91.4
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 2.7e-09 65.1 35 91.4
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 2.7e-09 65.1 35 91.4
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 2.7e-09 65.1 72 61.1
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 3.6e-09 64.7 75 81.3
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 3.6e-09 64.7 72 70.8
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 3.6e-09 64.7 35 88.6
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 4.6e-09 64.3 36 91.7
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 4.6e-09 64.3 72 70.8
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 4.6e-09 64.3 72 62.5
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 6.1e-09 63.9 75 61.3
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 7.9e-09 63.5 72 68.1
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 1.0e-08 63.2 35 85.7
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 1.4e-08 62.8 72 68.1
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 1.4e-08 62.8 34 91.2
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 1.4e-08 62.8 33 93.9
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 1.8e-08 62.4 37 86.5
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 2.3e-08 62.0 38 78.9
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 3.0e-08 61.6 71 60.6
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 3.0e-08 61.6 36 86.1
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 6.7e-08 60.5 34 88.2
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 6.7e-08 60.5 37 78.4
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 6.7e-08 60.5 72 66.7
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 1.1e-07 59.7 35 82.9
MELO3C002341.2 Cucumis melo HOM05D007996 ORTHO05D009821 1.1e-07 59.7 37 78.4
DCAR_007470 Daucus carota HOM05D007996 ORTHO05D009821 1.1e-07 59.7 34 85.3
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.5e-07 59.3 35 82.9
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 1.5e-07 59.3 34 85.3
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 2.0e-07 58.9 37 78.4
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 2.6e-07 58.5 35 77.1
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 2.6e-07 58.5 35 77.1
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 3.3e-07 58.2 36 77.8
MBI06_g40149_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 3.3e-07 58.2 37 81.1
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 5.7e-07 57.4 34 82.4
TWI39G0948 Tripterygium wilfordii HOM05D000063 ORTHO05D008721 5.7e-07 57.4 32 84.4
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 7.4e-07 57.0 71 74.6
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 7.4e-07 57.0 36 77.8
THA.LOC109116227 Tarenaya hassleriana HOM05D007996 ORTHO05D009821 7.4e-07 57.0 35 77.1
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 9.7e-07 56.6 37 81.1
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 9.7e-07 56.6 36 75.0
AT5G50335 Arabidopsis thaliana HOM05D013032 ORTHO05D009821 1.7e-06 55.8 75 45.3
CARHR258170 Cardamine hirsuta HOM05D013032 ORTHO05D009821 1.7e-06 55.8 75 45.3
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 1.7e-06 55.8 34 82.4
Carub.0008s1039 Capsella rubella HOM05D013032 ORTHO05D009821 2.2e-06 55.5 75 45.3
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 2.2e-06 55.5 38 76.3
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 2.8e-06 55.1 32 84.4
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 2.8e-06 55.1 32 84.4
Sp6g12420 Schrenkiella parvula HOM05D013032 ORTHO05D009821 2.8e-06 55.1 75 42.7
Lsat_1_v5_gn_1_29541 Lactuca sativa HOM05D007996 ORTHO05D009821 4.8e-06 54.3 35 74.3
Oeu037569.1 Olea europaea HOM05D007996 ORTHO05D009821 4.8e-06 54.3 37 78.4
BcaB08g35412 Brassica carinata HOM05D013032 ORTHO05D009821 6.3e-06 53.9 75 42.7
CAN.G352.51 Capsicum annuum HOM05D007996 ORTHO05D009821 6.3e-06 53.9 38 71.1
Cc04_g10190 Coffea canephora HOM05D007996 ORTHO05D009821 6.3e-06 53.9 35 77.1


User provided reference genes

Program Settings