Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 2004.9 1017 100.0
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1635.9 1072 81.2
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1513.8 1032 77.9
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1372.5 1028 69.6
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1365.5 992 71.9
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1325.5 1024 67.7
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1320.1 1055 65.1
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1319.3 1012 67.5
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1310.4 1024 67.1
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1295.8 1038 65.2
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1294.3 1023 65.7
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1291.6 1024 64.6
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1268.8 1017 64.5
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1263.8 1015 65.0
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1257.7 1023 64.4
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1256.5 1014 64.3
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1255.4 1025 63.5
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1253.8 1023 64.1
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1249.6 1016 64.7
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1248.8 1013 64.4
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1241.9 1023 64.0
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1239.9 1023 63.2
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1236.9 1024 62.7
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1226.5 1021 63.4
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1221.5 1025 62.3
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1219.1 1012 63.5
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1218.8 1024 62.7
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1218.4 1029 62.8
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1214.5 1021 60.9
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1213.7 1024 62.5
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1211.4 1024 62.4
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1209.9 1014 62.3
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1208.4 1025 61.1
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1204.9 1020 62.0
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1203.3 1023 61.4
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1201.0 1022 60.6
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1199.5 1022 61.4
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1199.1 1022 60.7
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1198.0 1021 60.4
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1193.7 1022 61.1
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1191.8 1022 60.0
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1187.9 1027 60.0
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1185.6 1012 60.9
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1183.3 1011 60.4
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1181.4 1011 60.5
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1177.2 1022 61.3
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1176.8 1021 61.2
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1174.1 1023 61.6
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1173.7 1021 60.2
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1170.2 1000 61.9
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1167.5 1021 60.1
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1166.8 1014 60.2
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1165.6 1023 59.7
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1164.4 1018 59.9
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1162.5 1021 60.2
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1159.1 1022 59.2
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1157.1 911 67.3
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1154.4 1000 61.4
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1152.1 1048 57.6
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1150.6 1021 59.0
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1146.0 1035 58.7
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1130.2 1019 59.9
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1128.2 1012 59.0
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1119.8 1017 58.9
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1112.8 1051 56.9
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1092.0 1028 55.5
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1078.2 1018 55.9
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.0e-310 1070.1 956 59.3
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 1.4e-307 1059.7 1022 54.8
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 1.9e-307 1059.3 1022 55.4
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 2.1e-306 1055.8 1024 55.4
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 3.5e-306 1055.0 1027 54.6
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 1.1e-302 1043.5 1025 54.8
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 5.3e-302 1041.2 1023 55.9
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 1.5e-301 1039.6 1015 56.3
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 9.9e-301 1036.9 1025 54.6
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 3.8e-300 1035.0 1041 54.0
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 2.4e-299 1032.3 1040 55.3
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 4.6e-298 1028.1 1022 55.8
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 6.0e-298 1027.7 1032 54.3
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 3.9e-297 1025.0 1028 53.8
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 6.7e-297 1024.2 1030 53.6
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 5.6e-296 1021.1 1006 54.0
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 9.6e-296 1020.4 1022 55.3
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 3.7e-295 1018.5 905 58.9
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.0e-292 1010.4 974 56.2
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 2.2e-292 1009.2 851 64.3
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 5.5e-275 951.4 1029 51.1
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 8.2e-271 937.6 998 51.5
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 3.2e-267 925.6 994 49.8
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 1.3e-255 887.1 729 63.1
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.0e-249 867.5 773 60.2
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 7.5e-248 861.3 691 69.8
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.5e-243 846.3 598 74.1
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.4e-222 776.5 794 53.1
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.3e-194 684.5 636 57.7
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 6.2e-194 682.2 636 58.2
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 4.9e-183 646.0 621 55.9
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.2e-176 624.8 546 61.7
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.1e-161 575.1 1070 34.3
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 1.0e-156 558.5 1004 37.5
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 8.2e-154 548.9 536 55.2
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 1.0e-143 515.4 965 37.3
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 8.5e-143 512.3 345 74.8
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 1.7e-114 418.3 395 54.4
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 2.8e-101 374.4 1118 28.6
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 1.7e-98 365.2 1127 28.1
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.3e-95 355.5 441 43.5
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.7e-87 328.6 324 57.1
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 3.2e-73 281.2 376 43.4
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.0e-63 249.6 258 53.1
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 9.6e-62 243.0 218 59.6
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 3.1e-60 238.0 564 32.4
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 5.0e-50 204.1 148 68.9
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 3.1e-44 184.9 234 46.2
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 3.2e-41 174.9 148 62.8
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 1.9e-33 149.1 149 49.0
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.4e-31 142.9 225 38.2
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 3.8e-26 124.8 194 39.7
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 5.0e-26 124.4 103 58.3
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 1.5e-25 122.9 427 27.2
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.2e-23 114.4 90 60.0
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.4e-22 111.7 131 51.1
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.7e-21 109.4 219 37.4
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.1e-20 106.7 157 36.9
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.7e-19 102.1 101 52.5
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.0e-18 100.1 101 51.5
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 7.2e-17 94.0 100 50.0
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 4.7e-16 91.3 90 54.4
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 2.3e-15 89.0 145 40.7
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 3.0e-15 88.6 75 56.0
PRCOL_00001784 Prasinoderma coloniale HOM05D005223 ORTHO05D006449 5.2e-15 87.8 381 28.3
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 3.7e-13 81.6 242 28.1
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 4.9e-13 81.3 64 59.4
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 5.9e-11 74.3 47 70.2
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 5.9e-11 74.3 47 70.2
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 7.7e-11 73.9 1016 20.7
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 1.0e-10 73.6 33 97.0
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 1.0e-10 73.6 64 56.2
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 4.7e-08 64.7 39 79.5
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 1.4e-07 63.2 52 57.7
Os02g0600000 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.4e-06 58.5 48 60.4


User provided reference genes

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