Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 2.6e-203 711.8 364 100.0
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.6e-123 446.8 367 66.8
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.2e-115 420.6 319 70.8
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 7.8e-115 417.9 337 66.5
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.0e-114 417.5 353 64.3
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.8e-111 406.8 346 63.9
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 3.4e-110 402.5 363 61.2
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 1.3e-109 400.6 355 62.0
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.7e-109 400.2 359 61.8
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 2.9e-109 399.4 320 65.6
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 3.8e-109 399.1 338 62.4
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 3.8e-109 399.1 318 66.7
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 3.8e-109 399.1 318 66.7
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 8.4e-109 397.9 318 66.7
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.9e-108 396.7 325 64.9
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.4e-108 396.4 241 81.7
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 9.3e-108 394.4 324 64.5
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 2.1e-107 393.3 315 64.8
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 2.7e-107 392.9 361 60.4
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 3.5e-107 392.5 352 61.4
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 6.0e-107 391.7 326 63.2
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 1.0e-106 391.0 318 66.0
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 1.0e-106 391.0 339 61.7
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 3.9e-106 389.0 318 65.7
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.6e-106 388.3 316 64.6
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 1.9e-105 386.7 327 63.9
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 2.5e-105 386.3 314 64.6
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 2.5e-105 386.3 329 63.8
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.3e-105 386.0 330 64.2
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.3e-105 386.0 343 62.4
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 4.3e-105 385.6 338 61.8
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.3e-105 385.6 362 59.1
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 4.3e-105 385.6 230 82.6
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 5.6e-105 385.2 338 62.7
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 7.3e-105 384.8 362 59.4
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.3e-104 384.0 362 59.1
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.1e-104 383.3 316 64.6
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 2.8e-104 382.9 318 65.1
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 3.6e-104 382.5 334 62.6
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 4.8e-104 382.1 351 61.3
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 8.1e-104 381.3 318 64.5
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 1.4e-103 380.6 232 81.9
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.4e-103 380.6 349 59.9
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.4e-103 380.6 271 73.1
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 1.8e-103 380.2 354 57.3
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 5.3e-103 378.6 357 59.9
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 6.9e-103 378.3 319 62.7
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 6.9e-103 378.3 239 80.3
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 6.9e-103 378.3 346 59.5
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 6.9e-103 378.3 314 63.7
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.2e-102 377.5 237 81.4
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 2.0e-102 376.7 316 63.0
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 2.6e-102 376.3 319 62.4
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 2.6e-102 376.3 319 62.4
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 3.4e-102 375.9 313 62.9
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 3.4e-102 375.9 328 60.4
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 3.4e-102 375.9 271 72.0
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 5.8e-102 375.2 315 63.5
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 5.8e-102 375.2 233 80.3
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 7.6e-102 374.8 366 59.6
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 2.2e-101 373.2 314 61.8
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 2.2e-101 373.2 332 60.8
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 2.9e-101 372.9 328 62.2
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 4.9e-101 372.1 348 58.6
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 6.4e-101 371.7 316 62.0
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 8.4e-101 371.3 324 60.2
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.1e-100 370.9 355 59.7
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.4e-100 369.8 317 64.4
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 2.4e-100 369.8 320 62.2
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 2.4e-100 369.8 318 62.3
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 5.4e-100 368.6 367 58.0
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 7.1e-100 368.2 231 78.4
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 9.3e-100 367.9 317 61.8
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.2e-99 367.5 347 58.8
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 3.5e-99 365.9 317 60.9
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 4.6e-99 365.5 231 77.5
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.3e-98 364.0 232 76.3
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.3e-98 364.0 335 58.8
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 2.3e-98 363.2 348 59.5
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 3.0e-98 362.8 368 55.7
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.5e-97 360.5 325 61.5
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.5e-97 360.5 352 57.1
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.5e-97 359.8 352 58.5
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.5e-97 359.8 352 58.5
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 2.5e-97 359.8 319 60.2
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 2.8e-96 356.3 332 58.4
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 5.3e-95 352.1 318 60.7
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.6e-94 349.7 344 56.4
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.7e-93 347.1 337 55.8
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 6.4e-93 345.1 360 54.4
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 8.4e-93 344.7 248 71.4
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 7.9e-91 338.2 234 72.6
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.3e-90 337.4 299 65.2
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 2.3e-90 336.7 263 66.2
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 5.1e-90 335.5 231 70.6
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.2e-86 324.3 461 46.6
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 9.3e-84 314.7 313 55.0
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.7e-83 313.2 194 78.4
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 7.9e-83 311.6 192 78.6
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.7e-82 308.1 235 67.7
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 9.7e-81 304.7 240 62.5
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 1.6e-80 303.9 238 63.0
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 9.4e-76 288.1 234 61.5
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.3e-72 277.7 197 67.0
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 3.9e-66 256.1 239 58.6
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 9.7e-65 251.5 251 56.6
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 5.3e-63 245.7 253 54.9
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.0e-61 241.5 263 53.6
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-60 236.5 157 73.9
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 3.6e-59 233.0 226 58.0
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.2e-54 218.0 184 60.3
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.6e-54 217.6 130 83.1
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.2e-53 213.8 171 67.3
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.2e-53 213.8 275 48.7
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.9e-52 210.7 171 66.7
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 2.1e-51 207.2 258 51.2
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.2e-45 187.2 126 71.4
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-44 184.5 228 51.3
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-44 183.7 167 60.5
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-43 181.0 167 61.1
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-43 181.0 162 61.1
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 6.1e-43 179.1 211 51.7
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 8.0e-43 178.7 156 62.8
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.0e-43 178.7 157 61.8
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-41 174.9 173 57.2
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-41 174.5 157 61.8
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.0e-41 174.1 108 81.5
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 5.7e-41 172.6 159 60.4
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-36 157.5 211 48.8
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 3.3e-36 156.8 98 77.6
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 9.5e-36 155.2 144 60.4
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 3.6e-35 153.3 209 48.3
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 2.3e-34 150.6 99 74.7
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-33 147.5 107 71.0
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-32 142.9 94 75.5
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 6.3e-32 142.5 76 90.8
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 9.2e-31 138.7 87 74.7
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-30 137.9 123 62.6
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-30 137.5 122 62.3
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 5.9e-30 136.0 161 51.6
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 5.9e-30 136.0 161 51.6
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 5.9e-30 136.0 228 38.6
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 9.8e-25 118.6 119 56.3
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-21 107.1 139 49.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-19 100.1 70 71.4
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.2e-18 96.3 133 45.1
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.5e-17 94.7 57 80.7
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-16 90.1 111 48.6
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-15 87.0 89 55.1
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.1e-14 84.3 56 73.2
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.0e-13 82.0 128 45.3
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 2.7e-06 57.4 29 86.2
MELO3C034534.2 Cucumis melo HOM05D004703 ORTHO05D005801 2.7e-06 57.4 38 68.4
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 7.8e-06 55.8 34 67.6


User provided reference genes

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