Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0183200 Rhododendron simsii HOM05D004211 ORTHO05D036616 9.5e-244 846.7 506 100.0
vmacro07563 Vaccinium macrocarpon HOM05D004211 ORTHO05D013939 5.6e-103 379.0 390 57.7
vmacro19253 Vaccinium macrocarpon HOM05D000568 ORTHO05D003200 5.0e-43 179.9 196 52.6
Rhsim08G0183400 Rhododendron simsii HOM05D000568 ORTHO05D003200 1.3e-30 138.7 181 47.0
Rhsim02G0232300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.3e-27 128.6 114 62.3
vmacro01177 Vaccinium macrocarpon HOM05D000045 ORTHO05D004773 5.0e-27 126.7 120 60.0
Rhsim10G0174800 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.8e-24 116.3 134 48.5
Prupe.5G158500 Prunus persica HOM05D000568 ORTHO05D003200 1.5e-23 115.2 186 37.6
Sabra12G0067200 Salix brachista HOM05D000568 ORTHO05D003200 5.7e-23 113.2 236 31.8
vmacro01894 Vaccinium macrocarpon HOM05D000045 ORTHO05D000067 5.7e-23 113.2 118 52.5
Manes.14G055800 Manihot esculenta HOM05D000568 ORTHO05D003200 1.3e-22 112.1 125 47.2
Rhsim05G0058900 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.3e-22 112.1 134 47.8
Sabra15G0111800 Salix brachista HOM05D000568 ORTHO05D003200 1.8e-21 108.2 210 35.7
Potri.012G092500 Populus trichocarpa HOM05D000568 ORTHO05D003200 2.4e-21 107.8 120 44.2
Prupe.5G159000 Prunus persica HOM05D000568 ORTHO05D003200 4.1e-21 107.1 106 48.1
Nitab4.5_0001360g0110 Nicotiana tabacum HOM05D000568 ORTHO05D003200 7.0e-21 106.3 189 34.9
Potri.015G089100 Populus trichocarpa HOM05D000568 ORTHO05D003200 4.5e-20 103.6 222 33.8
Prupe.5G158300 Prunus persica HOM05D000568 ORTHO05D003200 1.9e-18 98.2 132 40.9
Prupe.5G158700 Prunus persica HOM05D004211 ORTHO05D013939 9.5e-18 95.9 82 54.9
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 6.1e-17 93.2 106 49.1
arahy.Tifrunner.gnm1.ann1.75ENLE Arachis hypogaea HOM05D000568 ORTHO05D013939 1.8e-16 91.7 123 39.8
Prupe.5G158800 Prunus persica HOM05D004211 ORTHO05D003200 5.2e-16 90.1 141 38.3
SGA_v2.0_scaffold36G14377 Striga asiatica HOM05D000568 ORTHO05D003200 8.9e-16 89.4 148 38.5
Duzib068G0071 Durio zibethinus HOM05D000568 ORTHO05D003200 3.4e-15 87.4 148 38.5
Nitab4.5_0002531g0090 Nicotiana tabacum HOM05D000568 ORTHO05D003200 7.5e-15 86.3 184 31.5
Nn7g38088 Nelumbo nucifera HOM05D004211 ORTHO05D013939 1.7e-14 85.1 133 40.6
arahy.Tifrunner.gnm1.ann1.Z8L4ZJ Arachis hypogaea HOM05D015678 ORTHO05D013939 2.2e-14 84.7 157 34.4
Cpa.g.sc4.50 Carica papaya HOM05D000568 ORTHO05D003200 3.7e-14 84.0 199 34.7
Ciclev10019979m.g Citrus clementina HOM05D000568 ORTHO05D003200 3.7e-14 84.0 136 36.8
Manes.06G114200 Manihot esculenta HOM05D000568 ORTHO05D003200 3.7e-14 84.0 138 38.4
Atru.chr9.997 Acer truncatum HOM05D000568 ORTHO05D003200 1.4e-13 82.0 212 33.5
Gohir.A09G031900 Gossypium hirsutum HOM05D000568 ORTHO05D003200 1.4e-13 82.0 185 34.6
Lj5A101T106 Lonicera japonica HOM05D000568 ORTHO05D003200 1.8e-13 81.6 153 38.6
Duzib205G0872 Durio zibethinus HOM05D000568 ORTHO05D003200 2.4e-13 81.3 141 39.7
Actinidia19377 Actinidia chinensis HOM05D000568 ORTHO05D003200 4.1e-13 80.5 133 41.4
vmacro18307 Vaccinium macrocarpon HOM05D000568 ORTHO05D003200 4.1e-13 80.5 211 29.4
CiPaw.12G034800 Carya illinoinensis HOM05D000568 ORTHO05D003200 5.4e-13 80.1 116 43.1
ECA232G1415 Erigeron canadensis HOM05D000568 ORTHO05D003200 5.4e-13 80.1 191 30.9
MD06G1158900 Malus domestica HOM05D004211 ORTHO05D036616 5.4e-13 80.1 66 56.1
Gohir.D09G032000 Gossypium hirsutum HOM05D000568 ORTHO05D003200 7.0e-13 79.7 185 34.1
Gorai.006G036900 Gossypium raimondii HOM05D000568 ORTHO05D003200 7.0e-13 79.7 185 34.1
Aa31LG4G17020 Aethionema arabicum HOM05D000568 ORTHO05D003200 9.2e-13 79.3 200 31.5
MD06G1159100 Malus domestica HOM05D004211 ORTHO05D036616 2.0e-12 78.2 57 59.6
FvH4_5g07100 Fragaria vesca HOM05D000568 ORTHO05D003200 2.7e-12 77.8 180 31.7
Gohir.D11G038700 Gossypium hirsutum HOM05D000568 ORTHO05D003200 2.7e-12 77.8 214 32.2
MD14G1165100 Malus domestica HOM05D000568 ORTHO05D003200 2.7e-12 77.8 72 51.4
arahy.Tifrunner.gnm1.ann1.UBL83T Arachis hypogaea HOM05D000568 ORTHO05D003200 3.5e-12 77.4 186 33.9
Gorai.007G041600 Gossypium raimondii HOM05D000568 ORTHO05D003200 3.5e-12 77.4 196 33.2
SGA_v2.0_scaffold172G39023 Striga asiatica HOM05D000568 ORTHO05D003200 3.5e-12 77.4 236 28.4
Oeu054657.1 Olea europaea HOM05D000568 ORTHO05D003200 4.6e-12 77.0 203 34.0
CSS0047511 Camellia sinensis var. sinensis HOM05D000568 ORTHO05D003200 5.9e-12 76.6 179 36.9
COL.COLO4_08506 Corchorus olitorius HOM05D000568 ORTHO05D003200 5.9e-12 76.6 139 37.4
GSVIVG01007563001 Vitis vinifera HOM05D000568 ORTHO05D003200 7.8e-12 76.3 107 41.1
Prupe.5G158400 Prunus persica HOM05D004211 ORTHO05D005559 1.0e-11 75.9 121 36.4
PGR044G2114 Punica granatum HOM05D000568 ORTHO05D003200 1.0e-11 75.9 101 41.6
FAN08G3332 Fragaria x ananassa HOM05D000568 ORTHO05D003200 1.7e-11 75.1 181 33.1
Dinv38482 Davidia involucrata HOM05D000568 ORTHO05D003200 2.3e-11 74.7 129 41.1
FAN04G2566 Fragaria x ananassa HOM05D000568 ORTHO05D003200 2.3e-11 74.7 199 32.2
RcHm_v2.0_Chr7g0191441 Rosa chinensis HOM05D000568 ORTHO05D003200 2.3e-11 74.7 134 36.6
Thecc.04G026900 Theobroma cacao HOM05D000568 ORTHO05D003200 2.3e-11 74.7 224 30.8
Actinidia08851 Actinidia chinensis HOM05D000568 ORTHO05D003200 3.0e-11 74.3 152 38.2
Actinidia34694 Actinidia chinensis HOM05D000045 ORTHO05D000067 5.0e-11 73.6 116 37.1
Thecc.03G121400 Theobroma cacao HOM05D000568 ORTHO05D003200 5.0e-11 73.6 212 31.6
Hma1.2p1_0014F.1_g010050 Hydrangea macrophylla HOM05D000568 ORTHO05D003200 6.6e-11 73.2 113 40.7
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 6.6e-11 73.2 77 46.8
Gohir.D12G190550 Gossypium hirsutum HOM05D000568 ORTHO05D003200 8.6e-11 72.8 134 36.6
Gorai.008G204400 Gossypium raimondii HOM05D000568 ORTHO05D003200 8.6e-11 72.8 134 36.6
Gohir.A12G187600 Gossypium hirsutum HOM05D000568 ORTHO05D003200 1.1e-10 72.4 136 38.2
MD14G1165300 Malus domestica HOM05D000568 ORTHO05D003200 1.9e-10 71.6 72 50.0
FAN13G1895 Fragaria x ananassa HOM05D000568 ORTHO05D003200 2.5e-10 71.2 201 31.3
Gohir.A11G035100 Gossypium hirsutum HOM05D000568 ORTHO05D003200 3.3e-10 70.9 136 38.2
Gorai.001G061800 Gossypium raimondii HOM05D000568 ORTHO05D003200 1.2e-09 68.9 135 35.6
CDE10G0204 Ceratophyllum demersum HOM05D004211 ORTHO05D005559 1.6e-09 68.6 125 33.6
Glyma.17G126800 Glycine max HOM05D000568 ORTHO05D003200 1.6e-09 68.6 204 29.4
C09p09250 Brassica napus HOM05D004211 ORTHO05D013939 2.8e-09 67.8 52 50.0
BcaB08g36663 Brassica carinata HOM05D000568 ORTHO05D000628 3.6e-09 67.4 155 35.5
CiPaw.11G013100 Carya illinoinensis HOM05D000568 ORTHO05D003200 4.7e-09 67.0 122 36.9
RcHm_v2.0_Chr5g0019351 Rosa chinensis HOM05D001162 ORTHO05D003200 4.7e-09 67.0 122 36.9
Eucgr.B00161 Eucalyptus grandis HOM05D000568 ORTHO05D003200 6.2e-09 66.6 209 31.1
Gohir.A07G053900 Gossypium hirsutum HOM05D000568 ORTHO05D003200 6.2e-09 66.6 135 34.1
Prupe.5G159100 Prunus persica HOM05D000568 ORTHO05D003200 8.0e-09 66.2 121 35.5
Rhsim09G0036200 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.0e-08 65.9 69 43.5
Haze_07286 Corylus avellana HOM05D000568 ORTHO05D003200 1.4e-08 65.5 101 41.6
Lalb_Chr12g0202081 Lupinus albus HOM05D000568 ORTHO05D003200 1.4e-08 65.5 136 35.3
SGA_v2.0_scaffold7G03646 Striga asiatica HOM05D004211 ORTHO05D005559 1.4e-08 65.5 111 36.0
Ciclev10016232m.g Citrus clementina HOM05D004211 ORTHO05D003200 2.3e-08 64.7 66 45.5
CSS0000341 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.1e-08 64.3 118 35.6
Rhsim12G0171400 Rhododendron simsii HOM05D000568 ORTHO05D003200 3.1e-08 64.3 166 33.7
CSS0041653 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.0e-08 63.9 118 36.4
Nitab4.5_0000007g0420 Nicotiana tabacum HOM05D004211 ORTHO05D005559 6.8e-08 63.2 115 31.3
QL10p005500 Quercus lobata HOM05D000568 ORTHO05D003200 6.8e-08 63.2 137 36.5
TPR.G30139 Trifolium pratense HOM05D004211 ORTHO05D005559 8.9e-08 62.8 116 32.8
AT1G29570 Arabidopsis thaliana HOM05D021810 ORTHO05D012981 1.2e-07 62.4 35 62.9
BraA06t25005Z Brassica rapa HOM05D000568 ORTHO05D003200 1.2e-07 62.4 179 29.1
CSS0003195 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.2e-07 62.4 118 35.6
CSS0004211 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.2e-07 62.4 118 34.7
CSS0014838 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.2e-07 62.4 118 34.7
Rhsim01G0165100 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.2e-07 62.4 94 39.4
TAR624G1163 Trochodendron aralioides HOM05D004211 ORTHO05D005559 1.2e-07 62.4 117 30.8
CSS0023299 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.5e-07 62.0 118 35.6
CSS0025579 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.5e-07 62.0 118 35.6
CSS0042373 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.5e-07 62.0 118 35.6
CSS0047126 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.5e-07 62.0 118 35.6
Lj3g0001249 Lotus japonicus HOM05D004211 ORTHO05D005559 1.5e-07 62.0 116 35.3
MBI10_g30432_MAGBIO Magnolia biondii HOM05D004211 ORTHO05D005559 1.5e-07 62.0 118 33.1
vmacro01208 Vaccinium macrocarpon HOM05D000045 ORTHO05D004773 1.5e-07 62.0 108 40.7
Atru.chr1.3 Acer truncatum HOM05D004211 ORTHO05D005559 2.0e-07 61.6 110 31.8
DCAR_019902 Daucus carota HOM05D004211 ORTHO05D005559 2.0e-07 61.6 121 32.2
HanXRQChr11g0335901 Helianthus annuus HOM05D004211 ORTHO05D005559 2.0e-07 61.6 109 32.1
Ah.04g162360 Amaranthus hybridus HOM05D004211 ORTHO05D005559 2.6e-07 61.2 52 46.2
Aqoxy1G01339 Aquilegia oxysepala HOM05D004211 ORTHO05D005559 2.6e-07 61.2 114 33.3
Nitab4.5_0001995g0020 Nicotiana tabacum HOM05D004211 ORTHO05D005559 2.6e-07 61.2 115 30.4
Os06g0520600 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D002038 2.6e-07 61.2 45 53.3
Peaxi162Scf00089g00842 Petunia axillaris HOM05D000568 ORTHO05D003200 2.6e-07 61.2 144 31.9
PGSC0003DMG400015168 Solanum tuberosum HOM05D000568 ORTHO05D003200 2.6e-07 61.2 113 33.6
MSTRG.14576 Avicennia marina HOM05D004211 ORTHO05D005559 3.4e-07 60.8 115 32.2
CDE10G0346 Ceratophyllum demersum HOM05D004211 ORTHO05D005559 3.4e-07 60.8 106 33.0
Gohir.D07G058300 Gossypium hirsutum HOM05D000568 ORTHO05D003200 4.4e-07 60.5 106 34.9
Hma1.2p1_0151F.1_g066910 Hydrangea macrophylla HOM05D004211 ORTHO05D005559 4.4e-07 60.5 113 29.2
Lsat_1_v5_gn_7_111061 Lactuca sativa HOM05D004211 ORTHO05D005559 4.4e-07 60.5 112 32.1
Lalb_Chr03g0031981 Lupinus albus HOM05D004211 ORTHO05D005559 4.4e-07 60.5 143 30.1
SalBow8G2375 Salvia bowleyana HOM05D000936 ORTHO05D005107 4.4e-07 60.5 114 32.5
arahy.Tifrunner.gnm1.ann1.ZP601Q Arachis hypogaea HOM05D004211 ORTHO05D005559 5.8e-07 60.1 112 33.9
CBR_g28558 Chara braunii HOM05D000568 ORTHO05D000628 5.8e-07 60.1 77 40.3
MBI07_g10940_MAGBIO Magnolia biondii HOM05D004211 ORTHO05D005559 5.8e-07 60.1 114 30.7
Nn1g09842 Nelumbo nucifera HOM05D004211 ORTHO05D005559 5.8e-07 60.1 114 29.8
vmacro16700 Vaccinium macrocarpon HOM05D000568 ORTHO05D003200 5.8e-07 60.1 175 31.4
Ah.16g106500 Amaranthus hybridus HOM05D004211 ORTHO05D005559 7.5e-07 59.7 40 57.5
CAN.G472.43 Capsicum annuum HOM05D000568 ORTHO05D003200 7.5e-07 59.7 148 29.1
CAN.G87.6 Capsicum annuum HOM05D004211 ORTHO05D005559 7.5e-07 59.7 115 29.6
Ca_26791_v3 Cicer arietinum L. HOM05D004211 ORTHO05D005559 7.5e-07 59.7 116 31.9
Rhsim11G0165300 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.5e-07 59.7 55 49.1
Cfa018900 Carpinus fangiana HOM05D000568 ORTHO05D003200 9.8e-07 59.3 138 35.5
Medtr8g446930 Medicago truncatula HOM05D004211 ORTHO05D005559 9.8e-07 59.3 116 31.0
Sabra08G0059800 Salix brachista HOM05D004211 ORTHO05D005559 9.8e-07 59.3 143 29.4
CANSAT80G2497 Cannabis sativa HOM05D000568 ORTHO05D003200 1.3e-06 58.9 196 29.1
Os06g0519400 Oryza sativa ssp. japonica HOM05D004211 ORTHO05D005559 1.3e-06 58.9 35 62.9
Rhsim12G0052200 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.3e-06 58.9 107 37.4
ATR0073G009 Amborella trichopoda HOM05D004211 ORTHO05D005559 1.7e-06 58.5 40 55.0
Glyma.15G217400 Glycine max HOM05D004211 ORTHO05D005559 1.7e-06 58.5 116 30.2
Oeu017915.1 Olea europaea HOM05D000936 ORTHO05D005107 1.7e-06 58.5 114 31.6
SGA_v2.0_scaffold186G40165 Striga asiatica HOM05D004211 ORTHO05D005559 1.7e-06 58.5 108 33.3
Zm00001eb358260 Zea mays HOM05D004211 ORTHO05D005559 1.7e-06 58.5 85 42.4
CSS0005964 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.9e-06 57.8 118 33.9
CBR_g24052 Chara braunii HOM05D004211 ORTHO05D005559 2.9e-06 57.8 79 39.2
Dinv19567 Davidia involucrata HOM05D004211 ORTHO05D005559 2.9e-06 57.8 108 29.6
Phvul.011G180700 Phaseolus vulgaris HOM05D004211 ORTHO05D005559 2.9e-06 57.8 114 31.6
arahy.Tifrunner.gnm1.ann1.0NLM3R Arachis hypogaea HOM05D004211 ORTHO05D005559 3.7e-06 57.4 112 33.0
CSS0016871 Camellia sinensis var. sinensis HOM05D004211 ORTHO05D005559 3.7e-06 57.4 115 28.7
Cpa.g.sc118.25 Carica papaya HOM05D004211 ORTHO05D005559 3.7e-06 57.4 40 52.5
BcaB01g00809 Brassica carinata HOM05D000568 ORTHO05D003200 4.9e-06 57.0 176 28.4
Lj8A191G24 Lonicera japonica HOM05D004211 ORTHO05D005559 4.9e-06 57.0 40 50.0
QL04p096598 Quercus lobata HOM05D004211 ORTHO05D005559 4.9e-06 57.0 113 30.1
THA.LOC104816139 Tarenaya hassleriana HOM05D004211 ORTHO05D005559 4.9e-06 57.0 109 32.1
Cfa017780 Carpinus fangiana HOM05D004211 ORTHO05D005559 6.4e-06 56.6 110 30.0
CiPaw.15G110200 Carya illinoinensis HOM05D004211 ORTHO05D005559 8.3e-06 56.2 131 29.0
Migut.M01488 Erythranthe guttata HOM05D004211 ORTHO05D005559 8.3e-06 56.2 112 33.0
Glyma.08G232700 Glycine max HOM05D004211 ORTHO05D005559 8.3e-06 56.2 114 31.6
Sopen12g008190 Solanum pennellii HOM05D004211 ORTHO05D005559 8.3e-06 56.2 115 29.6


User provided reference genes

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