Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0179500 Rhododendron simsii HOM05D000025 ORTHO05D026930 9.2e-75 283.5 145 100.0
Rhsim08G0178500 Rhododendron simsii HOM05D000025 ORTHO05D000040 5.1e-25 118.2 141 49.6
vmacro19284 Vaccinium macrocarpon HOM05D000025 ORTHO05D000040 1.8e-22 109.8 151 45.7
vmacro19285 Vaccinium macrocarpon HOM05D000025 ORTHO05D000040 7.6e-21 104.4 152 42.1
vmacro19287 Vaccinium macrocarpon HOM05D000025 ORTHO05D000040 1.0e-20 104.0 157 42.0
vmacro19286 Vaccinium macrocarpon HOM05D000025 ORTHO05D000040 1.7e-20 103.2 127 52.8
vmacro19280 Vaccinium macrocarpon HOM05D000025 ORTHO05D000040 2.9e-20 102.4 152 42.1
vmacro19409 Vaccinium macrocarpon HOM05D000025 ORTHO05D000040 1.2e-18 97.1 139 43.9
vmacro19283 Vaccinium macrocarpon HOM05D000025 ORTHO05D000040 2.7e-18 95.9 145 42.1
vmacro23532 Vaccinium macrocarpon HOM05D000025 ORTHO05D000040 2.7e-18 95.9 145 42.1
Dinv20587 Davidia involucrata HOM05D000025 ORTHO05D000040 8.2e-15 84.3 157 36.3
Cfa019243 Carpinus fangiana HOM05D000025 ORTHO05D000040 1.1e-14 84.0 164 32.3
Cfa019237 Carpinus fangiana HOM05D000025 ORTHO05D026930 5.3e-14 81.6 178 32.0
Atru.chr9.2599 Acer truncatum HOM05D000025 ORTHO05D000040 4.5e-13 78.6 166 31.9
Cfa019239 Carpinus fangiana HOM05D000025 ORTHO05D000040 7.7e-13 77.8 111 40.5
Manes.14G059600 Manihot esculenta HOM05D000025 ORTHO05D000040 2.9e-12 75.9 146 33.6
QL10p006626 Quercus lobata HOM05D000025 ORTHO05D000040 2.9e-12 75.9 167 31.7
Duzib205G1236 Durio zibethinus HOM05D000025 ORTHO05D000040 3.8e-12 75.5 142 32.4
Haze_07603 Corylus avellana HOM05D000025 ORTHO05D000040 8.5e-12 74.3 146 33.6
CiPaw.11G017900 Carya illinoinensis HOM05D000025 ORTHO05D000040 1.1e-11 73.9 149 34.2
Thecc.03G116700 Theobroma cacao HOM05D000025 ORTHO05D000040 1.4e-11 73.6 167 33.5
Gohir.D10G207201 Gossypium hirsutum HOM05D000025 ORTHO05D000040 1.9e-11 73.2 146 32.9
Haze_07600 Corylus avellana HOM05D000025 ORTHO05D000040 2.5e-11 72.8 147 31.3
Gorai.011G232800 Gossypium raimondii HOM05D000025 ORTHO05D000040 2.5e-11 72.8 146 32.9
QL10p006583 Quercus lobata HOM05D000025 ORTHO05D000040 3.2e-11 72.4 150 34.0
CiPaw.11G018600 Carya illinoinensis HOM05D000025 ORTHO05D000040 4.2e-11 72.0 136 31.6
Potri.016G137400 Populus trichocarpa HOM05D000025 ORTHO05D000040 4.2e-11 72.0 167 30.5
Duzib084G1149 Durio zibethinus HOM05D000025 ORTHO05D000040 7.2e-11 71.2 141 35.5
Gohir.A10G199100 Gossypium hirsutum HOM05D000025 ORTHO05D000040 7.2e-11 71.2 146 34.9
TAR622G1014 Trochodendron aralioides HOM05D000025 ORTHO05D000040 1.2e-10 70.5 138 31.9
Haze_07604 Corylus avellana HOM05D000025 ORTHO05D000040 1.6e-10 70.1 149 28.9
Duzib205G0464 Durio zibethinus HOM05D000025 ORTHO05D000040 1.6e-10 70.1 140 31.4
QL10p006449 Quercus lobata HOM05D000025 ORTHO05D000040 1.6e-10 70.1 142 34.5
Haze_02811 Corylus avellana HOM05D000025 ORTHO05D000040 2.1e-10 69.7 146 30.1
Gorai.013G233300 Gossypium raimondii HOM05D000025 ORTHO05D000040 2.1e-10 69.7 148 33.8
QL10p006543 Quercus lobata HOM05D000025 ORTHO05D000040 2.1e-10 69.7 149 30.9
Gohir.D13G204450 Gossypium hirsutum HOM05D000025 ORTHO05D000040 3.6e-10 68.9 140 33.6
Manes.13G060400 Manihot esculenta HOM05D000025 ORTHO05D000040 3.6e-10 68.9 141 32.6
Gohir.D10G207000 Gossypium hirsutum HOM05D000025 ORTHO05D000040 4.6e-10 68.6 146 33.6
Gohir.D10G207100 Gossypium hirsutum HOM05D000025 ORTHO05D000040 4.6e-10 68.6 163 31.9
Gorai.011G232700 Gossypium raimondii HOM05D000025 ORTHO05D000040 4.6e-10 68.6 163 30.7
Atru.chr9.2627 Acer truncatum HOM05D000025 ORTHO05D000040 6.1e-10 68.2 169 33.1
Gohir.D13G204500 Gossypium hirsutum HOM05D000025 ORTHO05D000040 6.1e-10 68.2 148 33.1
QL10p006422 Quercus lobata HOM05D000025 ORTHO05D000040 6.1e-10 68.2 144 29.2
TAR622G0731 Trochodendron aralioides HOM05D000025 ORTHO05D000040 6.1e-10 68.2 139 32.4
CiPaw.11G018500 Carya illinoinensis HOM05D000025 ORTHO05D000040 7.9e-10 67.8 147 29.9
Atru.chr9.2603 Acer truncatum HOM05D000025 ORTHO05D000040 1.0e-09 67.4 169 32.0
Atru.chr9.2626 Acer truncatum HOM05D000025 ORTHO05D000040 1.0e-09 67.4 169 32.0
Gorai.011G232600 Gossypium raimondii HOM05D000025 ORTHO05D000040 1.0e-09 67.4 146 32.9
CiPaw.11G018300 Carya illinoinensis HOM05D000025 ORTHO05D000040 1.4e-09 67.0 147 30.6
Duzib205G0053 Durio zibethinus HOM05D000025 ORTHO05D000040 1.4e-09 67.0 146 30.1
Cfa019245 Carpinus fangiana HOM05D000025 ORTHO05D000040 1.8e-09 66.6 147 29.9
Ciclev10019648m.g Citrus clementina HOM05D000025 ORTHO05D000040 2.3e-09 66.2 158 32.3
Gohir.A13G199075 Gossypium hirsutum HOM05D000025 ORTHO05D000040 2.3e-09 66.2 148 32.4
Cfa019232 Carpinus fangiana HOM05D000434 ORTHO05D007220 3.0e-09 65.9 179 26.8
Cfa019246 Carpinus fangiana HOM05D000025 ORTHO05D000040 3.0e-09 65.9 146 30.1
CiPaw.11G017600 Carya illinoinensis HOM05D000025 ORTHO05D000040 3.0e-09 65.9 137 32.1
CiPaw.12G032300 Carya illinoinensis HOM05D000025 ORTHO05D000040 3.0e-09 65.9 146 30.8
Haze_07605 Corylus avellana HOM05D000025 ORTHO05D000040 3.0e-09 65.9 146 29.5
Aqoxy1G03412 Aquilegia oxysepala HOM05D000025 ORTHO05D000040 3.9e-09 65.5 167 28.1
Aqoxy3G01966 Aquilegia oxysepala HOM05D000025 ORTHO05D000040 3.9e-09 65.5 167 28.1
Potri.016G137600 Populus trichocarpa HOM05D000025 ORTHO05D000040 3.9e-09 65.5 167 29.3
Thecc.03G116600 Theobroma cacao HOM05D000025 ORTHO05D000040 3.9e-09 65.5 139 30.9
Manes.14G059100 Manihot esculenta HOM05D000025 ORTHO05D000040 5.1e-09 65.1 149 29.5
Potri.012G089600 Populus trichocarpa HOM05D000025 ORTHO05D000040 6.7e-09 64.7 139 30.2
QL10p006495 Quercus lobata HOM05D000025 ORTHO05D000040 8.8e-09 64.3 146 29.5
Haze_10121 Corylus avellana HOM05D000025 ORTHO05D000040 1.1e-08 63.9 147 30.6
Gohir.D10G141400 Gossypium hirsutum HOM05D000025 ORTHO05D000040 1.1e-08 63.9 139 31.7
QL03p003603 Quercus lobata HOM05D000025 ORTHO05D000040 1.1e-08 63.9 142 30.3
Ciclev10019699m.g Citrus clementina HOM05D000025 ORTHO05D000040 1.5e-08 63.5 152 32.9
Ciclev10019789m.g Citrus clementina HOM05D000025 ORTHO05D000040 1.5e-08 63.5 147 31.3
Duzib068G1192 Durio zibethinus HOM05D000025 ORTHO05D000040 2.0e-08 63.2 142 29.6
Gorai.011G157400 Gossypium raimondii HOM05D000025 ORTHO05D000040 2.0e-08 63.2 139 31.7
Prupe.5G164100 Prunus persica HOM05D000025 ORTHO05D000040 2.0e-08 63.2 147 29.3
QL03p002835 Quercus lobata HOM05D000025 ORTHO05D000040 2.0e-08 63.2 142 29.6
QL10p006481 Quercus lobata HOM05D000025 ORTHO05D026930 2.0e-08 63.2 55 50.9
TAR374G1352 Trochodendron aralioides HOM05D000025 ORTHO05D000040 2.0e-08 63.2 139 30.2
Cfa019235 Carpinus fangiana HOM05D000025 ORTHO05D000040 2.5e-08 62.8 146 30.1
Ciclev10019797m.g Citrus clementina HOM05D000025 ORTHO05D000040 3.3e-08 62.4 173 25.4
CsaV3_1G008940 Cucumis sativus L. HOM05D000025 ORTHO05D000040 3.3e-08 62.4 139 26.6
Aqoxy5G03653 Aquilegia oxysepala HOM05D000025 ORTHO05D000040 4.3e-08 62.0 167 26.9
Medtr4g104640 Medicago truncatula HOM05D000025 ORTHO05D000040 4.3e-08 62.0 148 29.7
Prupe.5G163700 Prunus persica HOM05D000025 ORTHO05D000040 4.3e-08 62.0 147 28.6
RcHm_v2.0_Chr7g0192301 Rosa chinensis HOM05D000025 ORTHO05D000040 5.7e-08 61.6 137 32.1
A06p27560 Brassica napus HOM05D000025 ORTHO05D000040 7.4e-08 61.2 145 31.7
CiPaw.11G018100 Carya illinoinensis HOM05D000025 ORTHO05D000040 7.4e-08 61.2 169 28.4
Ciclev10023920m.g Citrus clementina HOM05D000025 ORTHO05D000040 7.4e-08 61.2 161 26.7
Haze_04868 Corylus avellana HOM05D000025 ORTHO05D000040 9.7e-08 60.8 170 28.8
Potri.015G085600 Populus trichocarpa HOM05D000025 ORTHO05D000040 9.7e-08 60.8 146 30.8
Atru.chr9.2602 Acer truncatum HOM05D000025 ORTHO05D000040 1.7e-07 60.1 143 30.8
Sabra15G0108500 Salix brachista HOM05D000025 ORTHO05D000040 1.7e-07 60.1 135 31.9
Aqoxy5G03705 Aquilegia oxysepala HOM05D000025 ORTHO05D000040 2.2e-07 59.7 132 25.8
RcHm_v2.0_Chr5g0028981 Rosa chinensis HOM05D000025 ORTHO05D000040 2.2e-07 59.7 147 29.9
Oeu034014.1 Olea europaea HOM05D000025 ORTHO05D000040 3.7e-07 58.9 139 28.8
CiPaw.11G018400 Carya illinoinensis HOM05D000025 ORTHO05D000040 4.8e-07 58.5 132 31.1
COL.COLO4_20645 Corchorus olitorius HOM05D000025 ORTHO05D000040 4.8e-07 58.5 141 30.5
MELO3C002308.2 Cucumis melo HOM05D000025 ORTHO05D000040 4.8e-07 58.5 139 25.2
BraA06t25696Z Brassica rapa HOM05D000025 ORTHO05D000040 6.3e-07 58.2 145 31.0
Gohir.A03G075000 Gossypium hirsutum HOM05D000025 ORTHO05D000040 6.3e-07 58.2 153 30.1
Oeu023354.1 Olea europaea HOM05D000025 ORTHO05D000040 6.3e-07 58.2 151 29.8
Prupe.5G163800 Prunus persica HOM05D000025 ORTHO05D000040 6.3e-07 58.2 147 27.2
Haze_07711 Corylus avellana HOM05D000025 ORTHO05D000040 8.2e-07 57.8 147 30.6
Medtr3g077460 Medicago truncatula HOM05D000025 ORTHO05D000040 8.2e-07 57.8 121 30.6
Cc00_g09200 Coffea canephora HOM05D000025 ORTHO05D000040 1.1e-06 57.4 146 27.4
Atru.chr9.2628 Acer truncatum HOM05D000025 ORTHO05D000040 1.4e-06 57.0 146 30.1
Ciclev10018132m.g Citrus clementina HOM05D000025 ORTHO05D000040 1.4e-06 57.0 142 30.3
Lalb_Chr12g0201931 Lupinus albus HOM05D000025 ORTHO05D000040 1.4e-06 57.0 167 25.7
arahy.Tifrunner.gnm1.ann1.B3J73C Arachis hypogaea HOM05D000025 ORTHO05D000040 1.8e-06 56.6 81 39.5
arahy.Tifrunner.gnm1.ann1.LB6PYJ Arachis hypogaea HOM05D000025 ORTHO05D000040 1.8e-06 56.6 138 27.5
Gohir.D10G206800 Gossypium hirsutum HOM05D000025 ORTHO05D000040 1.8e-06 56.6 148 33.1
Gorai.011G232300 Gossypium raimondii HOM05D000025 ORTHO05D000040 1.8e-06 56.6 148 33.1
Manes.14G059300 Manihot esculenta HOM05D000025 ORTHO05D000040 1.8e-06 56.6 140 30.0
Prupe.5G164000 Prunus persica HOM05D000025 ORTHO05D000040 1.8e-06 56.6 155 27.7
RcHm_v2.0_Chr7g0192271 Rosa chinensis HOM05D000025 ORTHO05D000040 1.8e-06 56.6 145 28.3
ClCG03G003090 Citrullus lanatus HOM05D000025 ORTHO05D000040 2.4e-06 56.2 139 24.5
FAN25G0321 Fragaria x ananassa HOM05D000025 ORTHO05D000040 2.4e-06 56.2 147 29.3
FAN25G2976 Fragaria x ananassa HOM05D000025 ORTHO05D000040 2.4e-06 56.2 147 29.3
HanXRQChr02g0035461 Helianthus annuus HOM05D000025 ORTHO05D000040 2.4e-06 56.2 164 26.8
Nn6g35122 Nelumbo nucifera HOM05D000025 ORTHO05D000040 2.4e-06 56.2 140 30.0
arahy.Tifrunner.gnm1.ann1.GW438E Arachis hypogaea HOM05D000025 ORTHO05D000040 3.1e-06 55.8 166 25.9
arahy.Tifrunner.gnm1.ann1.MC3KWT Arachis hypogaea HOM05D000025 ORTHO05D000040 3.1e-06 55.8 147 28.6
FvH4_3g17450 Fragaria vesca HOM05D000025 ORTHO05D000040 3.1e-06 55.8 146 28.8
FAN16G0010 Fragaria x ananassa HOM05D000025 ORTHO05D000040 3.1e-06 55.8 146 28.8
Psat5g116960 Pisum sativum HOM05D000025 ORTHO05D000040 3.1e-06 55.8 135 28.1
BcaC01g02332 Brassica carinata HOM05D000025 ORTHO05D000040 4.1e-06 55.5 146 31.5
C03p66490 Brassica napus HOM05D000025 ORTHO05D000040 4.1e-06 55.5 146 31.5
CiPaw.11G018200 Carya illinoinensis HOM05D000025 ORTHO05D000040 4.1e-06 55.5 147 28.6
Ciclev10024587m.g Citrus clementina HOM05D000025 ORTHO05D000040 4.1e-06 55.5 133 30.1
Glyma.09G142200 Glycine max HOM05D000025 ORTHO05D000040 4.1e-06 55.5 150 28.0
Gohir.D03G101800 Gossypium hirsutum HOM05D000025 ORTHO05D000040 4.1e-06 55.5 143 29.4
Gohir.D12G188500 Gossypium hirsutum HOM05D000025 ORTHO05D000040 4.1e-06 55.5 146 28.1
Gorai.007G041400 Gossypium raimondii HOM05D000025 ORTHO05D048183 4.1e-06 55.5 108 37.0
Gorai.008G202400 Gossypium raimondii HOM05D000025 ORTHO05D000040 4.1e-06 55.5 146 28.1
Sed0020891 Sechium edule HOM05D000025 ORTHO05D000040 4.1e-06 55.5 147 25.9
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 5.3e-06 55.1 166 25.3
Medtr3g076560 Medicago truncatula HOM05D000025 ORTHO05D000040 5.3e-06 55.1 135 29.6
Psat4g061800 Pisum sativum HOM05D000025 ORTHO05D000040 5.3e-06 55.1 160 27.5
arahy.Tifrunner.gnm1.ann1.E6IN6R Arachis hypogaea HOM05D000025 ORTHO05D000040 6.9e-06 54.7 146 28.1
BcaB02g10659 Brassica carinata HOM05D000025 ORTHO05D000040 6.9e-06 54.7 145 30.3
CAN.G126.66 Capsicum annuum HOM05D000025 ORTHO05D000040 6.9e-06 54.7 143 27.3
Medtr3g076550 Medicago truncatula HOM05D000025 ORTHO05D000040 6.9e-06 54.7 145 27.6
Sp7g12870 Schrenkiella parvula HOM05D000025 ORTHO05D000040 6.9e-06 54.7 148 26.4
arahy.Tifrunner.gnm1.ann1.YWUC8U Arachis hypogaea HOM05D000025 ORTHO05D000040 9.1e-06 54.3 146 28.1
Nn4g22555 Nelumbo nucifera HOM05D000025 ORTHO05D000040 9.1e-06 54.3 135 26.7
QL10p006411 Quercus lobata HOM05D000025 ORTHO05D000040 9.1e-06 54.3 54 48.1
TPR.G37465 Trifolium pratense HOM05D000025 ORTHO05D000040 9.1e-06 54.3 145 29.0


User provided reference genes

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