Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0179200 Rhododendron simsii HOM05D005509 ORTHO05D006411 1.8e-50 202.2 98 100.0
Rhsim08G0176800 Rhododendron simsii HOM05D005509 ORTHO05D006411 2.2e-48 195.3 98 95.9
Rhsim09G0001400 Rhododendron simsii HOM05D001561 ORTHO05D001715 4.5e-33 144.4 83 88.0
Rhsim09G0165100 Rhododendron simsii HOM05D005509 ORTHO05D006411 1.1e-28 129.8 86 81.4
CSS0042515 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 2.5e-23 112.1 79 74.7
Actinidia13870 Actinidia chinensis HOM05D005509 ORTHO05D006411 2.3e-21 105.5 81 69.1
GSVIVG01016570001 Vitis vinifera HOM05D005509 ORTHO05D006411 1.7e-19 99.4 81 66.7
COL.COLO4_14983 Corchorus olitorius HOM05D005509 ORTHO05D006411 7.0e-18 94.0 79 65.8
Cc02_g08060 Coffea canephora HOM05D005509 ORTHO05D006411 9.1e-18 93.6 78 65.4
Lj8A85G36 Lonicera japonica HOM05D005509 ORTHO05D006411 1.2e-17 93.2 81 65.4
ClCG07G003330 Citrullus lanatus HOM05D005509 ORTHO05D006411 1.6e-17 92.8 83 62.7
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 2.0e-17 92.4 80 65.0
CsaV3_5G008080 Cucumis sativus L. HOM05D005509 ORTHO05D006411 2.6e-17 92.0 83 63.9
Manes.10G032200 Manihot esculenta HOM05D005509 ORTHO05D006411 2.6e-17 92.0 79 65.8
Haze_17044 Corylus avellana HOM05D005509 ORTHO05D006411 1.0e-16 90.1 81 64.2
Ciclev10032822m.g Citrus clementina HOM05D005509 ORTHO05D006411 1.7e-16 89.4 81 60.5
Atru.chr12.494 Acer truncatum HOM05D005509 ORTHO05D006411 2.2e-16 89.0 78 66.7
Hma1.2p1_0533F.1_g173520 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 3.8e-16 88.2 82 62.2
Dinv25997 Davidia involucrata HOM05D005509 ORTHO05D006411 6.5e-16 87.4 81 60.5
Duzib106G1457 Durio zibethinus HOM05D005509 ORTHO05D006411 1.1e-15 86.7 81 59.3
Thecc.10G045900 Theobroma cacao HOM05D005509 ORTHO05D006411 1.5e-15 86.3 80 62.5
Cfa001498 Carpinus fangiana HOM05D005509 ORTHO05D006411 1.9e-15 85.9 81 63.0
HanXRQChr14g0458211 Helianthus annuus HOM05D005509 ORTHO05D006411 9.4e-15 83.6 78 60.3
Duzib114G0718 Durio zibethinus HOM05D005509 ORTHO05D006411 1.2e-14 83.2 81 59.3
Gohir.A10G216300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 1.2e-14 83.2 81 55.6
Cpa.g.sc1.389 Carica papaya HOM05D005509 ORTHO05D006411 1.6e-14 82.8 79 63.3
DCAR_015180 Daucus carota HOM05D005509 ORTHO05D006411 2.1e-14 82.4 85 58.8
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 2.1e-14 82.4 75 61.3
Gohir.D10G225300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 3.6e-14 81.6 81 54.3
Gorai.011G256300 Gossypium raimondii HOM05D005509 ORTHO05D006411 3.6e-14 81.6 81 54.3
THA.LOC104810024 Tarenaya hassleriana HOM05D005509 ORTHO05D006411 4.7e-14 81.3 81 54.3
Sabra10G0159800 Salix brachista HOM05D005509 ORTHO05D006411 6.1e-14 80.9 55 72.7
Lsat_1_v5_gn_2_116581 Lactuca sativa HOM05D005509 ORTHO05D006411 1.4e-13 79.7 77 58.4
Sp5g07080 Schrenkiella parvula HOM05D005509 ORTHO05D006411 2.3e-13 79.0 81 54.3
Aa31LG10G10410 Aethionema arabicum HOM05D005509 ORTHO05D006411 3.0e-13 78.6 55 69.1
Carub.0005s2210 Capsella rubella HOM05D005509 ORTHO05D006411 3.0e-13 78.6 81 54.3
Potri.008G053500 Populus trichocarpa HOM05D005509 ORTHO05D006411 3.0e-13 78.6 55 69.1
Aqoxy2G02060 Aquilegia oxysepala HOM05D005509 ORTHO05D006411 5.2e-13 77.8 81 56.8
BcaB01g00105 Brassica carinata HOM05D005509 ORTHO05D006411 6.8e-13 77.4 81 54.3
BcaC07g39857 Brassica carinata HOM05D005509 ORTHO05D006411 6.8e-13 77.4 81 54.3
A09p48320 Brassica napus HOM05D005509 ORTHO05D006411 6.8e-13 77.4 81 54.3
BraA09t40284Z Brassica rapa HOM05D005509 ORTHO05D006411 6.8e-13 77.4 81 54.3
Potri.010G207000 Populus trichocarpa HOM05D005509 ORTHO05D006411 6.8e-13 77.4 69 62.3
Sed0018254 Sechium edule HOM05D005509 ORTHO05D006411 6.8e-13 77.4 80 57.5
CANSAT56G3940 Cannabis sativa HOM05D005509 ORTHO05D006411 8.8e-13 77.0 75 56.0
CARHR165400 Cardamine hirsuta HOM05D005509 ORTHO05D006411 8.8e-13 77.0 81 54.3
Prupe.2G232700 Prunus persica HOM05D005509 ORTHO05D006411 8.8e-13 77.0 81 56.8
AL5G36540 Arabidopsis lyrata HOM05D005509 ORTHO05D006411 1.2e-12 76.6 81 54.3
Thhalv10010742m.g Eutrema salsugineum HOM05D005509 ORTHO05D006411 1.2e-12 76.6 81 53.1
Peaxi162Scf00760g00127 Petunia axillaris HOM05D005509 ORTHO05D006411 1.2e-12 76.6 81 53.1
AT3G55390 Arabidopsis thaliana HOM05D005509 ORTHO05D006411 2.6e-12 75.5 81 53.1
C08p30610 Brassica napus HOM05D005509 ORTHO05D006411 2.6e-12 75.5 81 53.1
AUR62036379 Chenopodium quinoa HOM05D005509 ORTHO05D006411 2.6e-12 75.5 83 53.0
Nitab4.5_0003969g0090 Nicotiana tabacum HOM05D005509 ORTHO05D006411 2.6e-12 75.5 86 53.5
Nitab4.5_0005525g0100 Nicotiana tabacum HOM05D005509 ORTHO05D006411 2.6e-12 75.5 86 53.5
Oeu051004.1 Olea europaea HOM05D005509 ORTHO05D006411 2.6e-12 75.5 74 59.5
Lsat_1_v5_gn_8_16220 Lactuca sativa HOM05D005509 ORTHO05D006411 4.4e-12 74.7 83 55.4
TAR369G0916 Trochodendron aralioides HOM05D005509 ORTHO05D006411 4.4e-12 74.7 81 55.6
TAR369G1093 Trochodendron aralioides HOM05D005509 ORTHO05D006411 4.4e-12 74.7 81 55.6
BolC8t50677H Brassica oleracea HOM05D005509 ORTHO05D006411 5.7e-12 74.3 81 51.9
CANSAT56G0048 Cannabis sativa HOM05D005509 ORTHO05D006411 5.7e-12 74.3 75 54.7
Glyma.20G099700 Glycine max HOM05D005509 ORTHO05D006411 5.7e-12 74.3 81 54.3
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 5.7e-12 74.3 81 58.0
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 5.7e-12 74.3 85 52.9
Ca_11287_v3 Cicer arietinum L. HOM05D005509 ORTHO05D006411 9.8e-12 73.6 80 55.0
BcaB02g08425 Brassica carinata HOM05D005509 ORTHO05D006411 1.3e-11 73.2 80 51.2
Phvul.007G011900 Phaseolus vulgaris HOM05D005509 ORTHO05D006411 1.3e-11 73.2 81 53.1
ECA233G3830 Erigeron canadensis HOM05D005509 ORTHO05D006411 1.7e-11 72.8 81 56.8
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 2.2e-11 72.4 90 51.1
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 2.2e-11 72.4 79 53.2
EL10Ac2g03407 Beta vulgaris HOM05D005509 ORTHO05D006411 2.8e-11 72.0 72 52.8
LjContig00357g0008800 Lotus japonicus HOM05D005509 ORTHO05D006411 2.8e-11 72.0 79 53.2
Eucgr.J00034 Eucalyptus grandis HOM05D005509 ORTHO05D006411 3.7e-11 71.6 76 53.9
Lalb_Chr21g0307401 Lupinus albus HOM05D005509 ORTHO05D006411 3.7e-11 71.6 80 50.0
PSO648G0089 Papaver somniferum HOM05D005509 ORTHO05D006411 6.3e-11 70.9 87 46.0
Sabra08G0038700 Salix brachista HOM05D005509 ORTHO05D006411 6.3e-11 70.9 69 56.5
VMungo0720G2814 Vigna mungo HOM05D005509 ORTHO05D006411 6.3e-11 70.9 79 50.6
FAN03G3362 Fragaria x ananassa HOM05D005509 ORTHO05D006411 8.3e-11 70.5 73 57.5
Nn1g05020 Nelumbo nucifera HOM05D005509 ORTHO05D006411 8.3e-11 70.5 85 57.6
FvH4_7g22070 Fragaria vesca HOM05D005509 ORTHO05D006411 1.1e-10 70.1 74 56.8
FAN01G0775 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.1e-10 70.1 74 56.8
FAN01G1468 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.1e-10 70.1 74 56.8
FAN06G1416 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.1e-10 70.1 74 56.8
FAN06G2974 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.1e-10 70.1 74 56.8
Glyma.10G289200 Glycine max HOM05D005509 ORTHO05D006411 1.4e-10 69.7 81 53.1
CSS0029595 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 2.4e-10 68.9 53 73.6
TPR.G13986 Trifolium pratense HOM05D005509 ORTHO05D006411 2.4e-10 68.9 80 52.5
Lj5g0000580 Lotus japonicus HOM05D005509 ORTHO05D006411 4.1e-10 68.2 81 50.6
MD01G1125700 Malus domestica HOM05D005509 ORTHO05D006411 5.4e-10 67.8 78 55.1
PGR044G0205 Punica granatum HOM05D005509 ORTHO05D006411 7.0e-10 67.4 79 48.1
CDE02G1375 Ceratophyllum demersum HOM05D005509 ORTHO05D006411 9.1e-10 67.0 80 50.0
FAN10G3714 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.2e-09 66.6 57 64.9
Medtr1g115285 Medicago truncatula HOM05D005509 ORTHO05D006411 1.2e-09 66.6 79 48.1
PSO339G1164 Papaver somniferum HOM05D005509 ORTHO05D006411 1.6e-09 66.2 87 46.0
Psat6g235920 Pisum sativum HOM05D005509 ORTHO05D006411 2.0e-09 65.9 80 51.2
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 2.7e-09 65.5 76 56.6
Hund20028 Selenicereus undatus HOM05D005509 ORTHO05D006411 3.5e-09 65.1 84 48.8
AUR62030741 Chenopodium quinoa HOM05D005509 ORTHO05D006411 4.5e-09 64.7 87 47.1
Peaxi162Scf00015g01412 Petunia axillaris HOM05D005509 ORTHO05D006411 4.5e-09 64.7 84 50.0
HanXRQChr08g0220491 Helianthus annuus HOM05D005509 ORTHO05D006411 5.9e-09 64.3 89 49.4
MELO3C023854.2 Cucumis melo HOM05D005509 ORTHO05D006411 7.7e-09 63.9 54 64.8
arahy.Tifrunner.gnm1.ann1.LMNG4E Arachis hypogaea HOM05D005509 ORTHO05D006411 1.7e-08 62.8 64 53.1
arahy.Tifrunner.gnm1.ann1.QH4526 Arachis hypogaea HOM05D005509 ORTHO05D006411 2.2e-08 62.4 78 48.7
C04p36990 Brassica napus HOM05D005509 ORTHO05D006411 2.9e-08 62.0 83 47.0
Sabra08G0038600 Salix brachista HOM05D005509 ORTHO05D006411 2.9e-08 62.0 80 48.8
ATR0559G011 Amborella trichopoda HOM05D005509 ORTHO05D006411 3.8e-08 61.6 84 47.6
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 3.8e-08 61.6 69 50.7
TAR633G1442 Trochodendron aralioides HOM05D005509 ORTHO05D006411 3.8e-08 61.6 69 55.1
HPP92_001486 Vanilla planifolia HOM05D005509 ORTHO05D006411 3.8e-08 61.6 81 50.6
Hma1.2p1_2608F.1_g325330 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 6.1e-06 54.3 55 58.2


User provided reference genes

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