Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0178600 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-125 453.0 268 100.0
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.2e-67 260.8 261 56.3
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.7e-61 239.2 176 68.2
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-48 197.2 260 46.5
vmacro23283 Vaccinium macrocarpon HOM05D000163 ORTHO05D009356 1.8e-44 183.7 234 42.7
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.7e-40 169.1 250 42.0
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.8e-39 167.2 256 41.0
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.3e-37 158.7 166 53.6
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.4e-36 157.5 209 43.1
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.5e-35 152.5 254 38.2
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.7e-32 143.3 256 34.8
Rhsim09G0039900 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.3e-29 132.1 230 40.0
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 1.4e-23 114.4 187 36.4
vmacro12106 Vaccinium macrocarpon HOM05D000081 ORTHO05D009356 2.6e-22 110.2 126 45.2
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 9.8e-22 108.2 196 34.2
vmacro09750 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 2.2e-21 107.1 258 31.4
vmacro11925 Vaccinium macrocarpon HOM05D000203 ORTHO05D009356 7.0e-20 102.1 220 31.8
vmacro06592 Vaccinium macrocarpon HOM05D000211 ORTHO05D002285 7.7e-19 98.6 181 34.8
Rhsim04G0141400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.0e-18 98.2 219 32.9
Rhsim09G0015100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.0e-18 98.2 160 43.1
Rhsim04G0090900 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.3e-18 97.1 211 32.2
RhsimUnG0239600 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.3e-18 97.1 183 33.3
Rhsim11G0140400 Rhododendron simsii HOM05D000026 ORTHO05D009356 6.6e-18 95.5 273 30.4
Rhsim09G0077300 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.6e-18 95.1 106 55.7
vmacro10949 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.1e-16 90.5 208 32.2
Rhsim05G0024200 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.0e-15 86.3 184 30.4
RhsimUnG0085900 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.7e-14 82.4 217 32.3
Rhsim10G0108900 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.4e-12 77.0 114 36.0
Actinidia26692 Actinidia chinensis HOM05D008219 ORTHO05D009356 4.1e-12 76.3 114 36.0
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 9.2e-12 75.1 115 38.3
Rhsim11G0150800 Rhododendron simsii HOM05D012808 ORTHO05D009356 9.2e-12 75.1 150 34.0
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 1.2e-11 74.7 192 32.8
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 1.6e-11 74.3 176 30.1
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 1.6e-11 74.3 179 28.5
Rhsim01G0053100 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.5e-11 73.2 154 30.5
Rhsim01G0047800 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.5e-11 72.8 156 31.4
Rhsim05G0113800 Rhododendron simsii HOM05D010265 ORTHO05D009356 1.0e-10 71.6 135 34.1
Rhsim08G0091100 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.0e-10 69.3 85 43.5
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 5.0e-10 69.3 123 35.0
Rhsim12G0049400 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.6e-10 68.9 135 31.9
vmacro21269 Vaccinium macrocarpon HOM05D005003 ORTHO05D006220 1.9e-09 67.4 144 30.6
Rhsim02G0177400 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.3e-09 66.6 60 46.7
Actinidia11343 Actinidia chinensis HOM05D019814 ORTHO05D009356 5.6e-09 65.9 137 34.3
Thecc.05G279300 Theobroma cacao HOM05D012808 ORTHO05D000006 1.2e-08 64.7 90 35.6
vmacro09252 Vaccinium macrocarpon HOM05D008219 ORTHO05D000487 1.2e-08 64.7 147 29.3
Glyma.20G003900 Glycine max HOM05D002777 ORTHO05D001516 2.1e-08 63.9 128 30.5
Rhsim11G0186100 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.8e-08 63.5 78 52.6
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 2.8e-08 63.5 91 30.8
Sc11g0007070 Simmondsia chinensis HOM05D009209 ORTHO05D011705 6.1e-08 62.4 152 28.9
Lalb_Chr23g0273581 Lupinus albus HOM05D002777 ORTHO05D001516 8.0e-08 62.0 88 31.8
CSS0029903 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 1.8e-07 60.8 56 44.6
Sc03g0004450 Simmondsia chinensis HOM05D009209 ORTHO05D011705 5.2e-07 59.3 98 32.7
Gorai.009G210100 Gossypium raimondii HOM05D019814 ORTHO05D025702 1.2e-06 58.2 79 36.7
RhsimUnG0052900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.5e-06 57.8 75 50.7
TPR.G18402 Trifolium pratense HOM05D002777 ORTHO05D001516 1.5e-06 57.8 89 33.7
Rhsim10G0184600 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.0e-06 57.4 59 59.3
CSS0024781 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 3.4e-06 56.6 153 30.1
Lj5g0006780 Lotus japonicus HOM05D008220 ORTHO05D010358 4.4e-06 56.2 184 25.5
Medtr2g103400 Medicago truncatula HOM05D002777 ORTHO05D001516 4.4e-06 56.2 71 35.2
MBI02_g39287_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 7.5e-06 55.5 68 38.2


User provided reference genes

Program Settings