Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 1.5e-176 622.9 330 100.0
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 4.3e-35 152.9 121 77.7
QL10p006910 Quercus lobata HOM05D008378 ORTHO05D010346 4.3e-19 99.8 128 56.2
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 5.6e-19 99.4 112 60.7
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 5.2e-17 92.8 133 48.1
Prupe.8G004000 Prunus persica HOM05D008378 ORTHO05D010346 1.2e-16 91.7 118 54.2
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 2.0e-16 90.9 126 53.2
Migut.D01994 Erythranthe guttata HOM05D008378 ORTHO05D010346 9.9e-16 88.6 85 64.7
Haze_07583 Corylus avellana HOM05D008378 ORTHO05D010346 2.2e-15 87.4 132 49.2
Cfa019213 Carpinus fangiana HOM05D008378 ORTHO05D010346 4.9e-15 86.3 132 47.0
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 4.9e-15 86.3 79 62.0
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 8.4e-15 85.5 125 47.2
RcHm_v2.0_Chr6g0249651 Rosa chinensis HOM05D008378 ORTHO05D010346 8.4e-15 85.5 117 48.7
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 1.9e-14 84.3 117 52.1
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 2.4e-14 84.0 126 48.4
vmacro19303 Vaccinium macrocarpon HOM05D000048 ORTHO05D000207 1.6e-13 81.3 51 80.4
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 2.1e-13 80.9 106 54.7
HanXRQChr02g0035801 Helianthus annuus HOM05D008378 ORTHO05D010346 2.7e-13 80.5 107 51.4
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 4.6e-13 79.7 124 43.5
MSTRG.23165 Avicennia marina HOM05D008378 ORTHO05D010346 1.0e-12 78.6 113 49.6
SalBow5G0298 Salvia bowleyana HOM05D008378 ORTHO05D010346 1.7e-12 77.8 119 48.7
SalBow5G3471 Salvia bowleyana HOM05D008378 ORTHO05D010346 2.3e-12 77.4 119 47.9
ClCG06G017410 Citrullus lanatus HOM05D008378 ORTHO05D010346 3.0e-12 77.0 106 52.8
Dinv16953 Davidia involucrata HOM05D008378 ORTHO05D010346 3.9e-12 76.6 92 56.5
Peaxi162Scf00089g01344 Petunia axillaris HOM05D000048 ORTHO05D000207 3.9e-12 76.6 225 33.8
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 6.6e-12 75.9 108 51.9
MELO3C029768.2 Cucumis melo HOM05D008378 ORTHO05D010346 8.6e-12 75.5 73 64.4
EL10Ac5g10649 Beta vulgaris HOM05D008378 ORTHO05D010346 1.9e-11 74.3 121 46.3
THA.LOC104809774 Tarenaya hassleriana HOM05D008378 ORTHO05D010346 2.5e-11 73.9 70 60.0
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 3.3e-11 73.6 129 45.7
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 5.6e-11 72.8 108 50.0
CsaV3_1G001040 Cucumis sativus L. HOM05D000048 ORTHO05D010346 1.2e-10 71.6 119 46.2
Cc04_g11560 Coffea canephora HOM05D008378 ORTHO05D010346 1.6e-10 71.2 62 66.1
Migut.O00155 Erythranthe guttata HOM05D008378 ORTHO05D010346 6.2e-10 69.3 129 45.7
Nitab4.5_0013669g0010 Nicotiana tabacum HOM05D008378 ORTHO05D010346 6.2e-10 69.3 77 54.5
HanXRQChr05g0154181 Helianthus annuus HOM05D008378 ORTHO05D010346 1.1e-09 68.6 106 50.9
Manes.06G110000 Manihot esculenta HOM05D008378 ORTHO05D010346 1.1e-09 68.6 167 39.5
Lj4g0016291 Lotus japonicus HOM05D020160 ORTHO05D010346 2.4e-09 67.4 88 52.3
Nitab4.5_0000003g0800 Nicotiana tabacum HOM05D008378 ORTHO05D010346 5.2e-09 66.2 102 49.0
Sed0014985 Sechium edule HOM05D008378 ORTHO05D010346 5.2e-09 66.2 126 44.4
Potri.015G083900 Populus trichocarpa HOM05D008378 ORTHO05D010346 8.9e-09 65.5 56 67.9
Aqoxy5G03757 Aquilegia oxysepala HOM05D008378 ORTHO05D010346 1.2e-08 65.1 89 48.3
BcaC01g04828 Brassica carinata HOM05D008378 ORTHO05D010346 1.2e-08 65.1 61 63.9
Peaxi162Scf00089g01325 Petunia axillaris HOM05D008378 ORTHO05D010346 1.2e-08 65.1 83 54.2
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 1.2e-08 65.1 59 66.1
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 2.0e-08 64.3 70 61.4
A03p27680 Brassica napus HOM05D008378 ORTHO05D010346 2.0e-08 64.3 61 63.9
C03p33390 Brassica napus HOM05D008378 ORTHO05D010346 2.0e-08 64.3 61 63.9
BolC3t15661H Brassica oleracea HOM05D008378 ORTHO05D010346 2.0e-08 64.3 61 63.9
BraA03t11981Z Brassica rapa HOM05D008378 ORTHO05D010346 2.0e-08 64.3 61 63.9
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 2.0e-08 64.3 103 44.7
Lsat_1_v5_gn_5_14380 Lactuca sativa HOM05D003772 ORTHO05D004509 2.6e-08 63.9 139 46.0
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 3.4e-08 63.5 106 43.4
Nitab4.5_0001683g0020 Nicotiana tabacum HOM05D008378 ORTHO05D010346 4.4e-08 63.2 92 48.9
BcaB01g02914 Brassica carinata HOM05D008378 ORTHO05D010346 5.8e-08 62.8 61 62.3
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 7.6e-08 62.4 89 47.2
Peaxi162Scf00057g00012 Petunia axillaris HOM05D008378 ORTHO05D010346 9.9e-08 62.0 120 40.0
Sc10g0010230 Simmondsia chinensis HOM05D008378 ORTHO05D010346 9.9e-08 62.0 82 51.2
PGSC0003DMG400018121 Solanum tuberosum HOM05D008378 ORTHO05D010346 9.9e-08 62.0 72 50.0
CARHR258450 Cardamine hirsuta HOM05D008378 ORTHO05D010346 2.9e-07 60.5 89 48.3
Sopen06g028050 Solanum pennellii HOM05D008378 ORTHO05D010346 4.9e-07 59.7 70 51.4
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 4.9e-07 59.7 71 56.3
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 6.4e-07 59.3 106 42.5
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 8.4e-07 58.9 87 46.0
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 8.4e-07 58.9 71 54.9
Carub.0008s1019 Capsella rubella HOM05D008378 ORTHO05D010346 1.1e-06 58.5 59 59.3
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 1.4e-06 58.2 161 37.9
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 2.4e-06 57.4 110 42.7
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 2.4e-06 57.4 96 44.8
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 2.4e-06 57.4 85 47.1
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.2e-06 57.0 95 45.3
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 3.2e-06 57.0 96 44.8
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 3.2e-06 57.0 87 48.3
AT5G50175 Arabidopsis thaliana HOM05D008378 ORTHO05D010346 4.2e-06 56.6 107 43.9
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 4.2e-06 56.6 165 36.4
Thhalv10015058m.g Eutrema salsugineum HOM05D008378 ORTHO05D010346 4.2e-06 56.6 108 44.4
Glyma.17G084800 Glycine max HOM05D020160 ORTHO05D010346 4.2e-06 56.6 108 40.7
PGSC0003DMG400027074 Solanum tuberosum HOM05D008378 ORTHO05D010346 4.2e-06 56.6 108 43.5
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 4.2e-06 56.6 119 45.4
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 5.4e-06 56.2 89 44.9
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 5.4e-06 56.2 89 46.1
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 5.4e-06 56.2 85 43.5
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 5.4e-06 56.2 86 47.7
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 5.4e-06 56.2 86 47.7
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 5.4e-06 56.2 86 47.7
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 5.4e-06 56.2 118 42.4
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 5.4e-06 56.2 87 43.7
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 7.1e-06 55.8 111 39.6
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 7.1e-06 55.8 161 37.3
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 7.1e-06 55.8 87 44.8
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 7.1e-06 55.8 89 42.7
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 7.1e-06 55.8 94 42.6
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 9.3e-06 55.5 121 42.1
CSS0026413 Camellia sinensis var. sinensis HOM05D000048 ORTHO05D000207 9.3e-06 55.5 43 60.5
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 9.3e-06 55.5 89 43.8
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 9.3e-06 55.5 89 43.8
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 9.3e-06 55.5 102 42.2
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 9.3e-06 55.5 86 47.7
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 9.3e-06 55.5 86 47.7
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 9.3e-06 55.5 86 47.7
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 9.3e-06 55.5 89 46.1
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 9.3e-06 55.5 89 44.9


User provided reference genes

Program Settings