Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 2.8e-116 423.7 705 100.0
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 9.3e-72 275.8 712 87.4
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 5.8e-66 256.5 712 87.4
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 7.6e-58 229.6 667 88.9
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 2.3e-54 218.0 707 70.2
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 5.3e-51 206.8 650 88.0
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 2.5e-48 198.0 717 77.0
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 2.1e-47 194.9 693 81.7
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 2.3e-46 191.4 137 69.3
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 3.9e-46 190.7 685 83.8
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 1.1e-45 189.1 651 87.9
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 1.5e-45 188.7 158 65.8
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 1.5e-45 188.7 705 81.3
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 2.0e-45 188.3 651 86.3
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 2.6e-45 188.0 652 87.6
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 5.7e-45 186.8 681 76.1
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 7.4e-45 186.4 703 82.4
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 1.7e-44 185.3 671 84.4
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 4.8e-44 183.7 645 86.5
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 4.8e-44 183.7 704 79.4
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 4.8e-44 183.7 689 81.4
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 4.8e-44 183.7 689 81.4
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 1.1e-43 182.6 651 84.6
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 1.1e-43 182.6 707 79.3
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 5.3e-43 180.3 703 77.4
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 7.0e-43 179.9 707 79.2
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 1.2e-42 179.1 126 68.3
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 1.5e-42 178.7 649 86.0
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 1.5e-42 178.7 650 86.8
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 2.6e-42 177.9 648 79.9
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 2.6e-42 177.9 689 76.5
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 3.4e-42 177.6 645 84.2
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 4.5e-42 177.2 708 81.8
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 7.7e-42 176.4 713 80.9
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 1.7e-41 175.3 664 82.8
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 2.2e-41 174.9 163 58.9
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 2.2e-41 174.9 689 81.9
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 2.9e-41 174.5 648 81.3
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 2.9e-41 174.5 690 76.4
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 8.5e-41 172.9 690 76.4
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.4e-40 172.2 131 67.2
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 4.2e-40 170.6 137 62.8
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.2e-39 169.1 131 65.6
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 1.2e-39 169.1 140 63.6
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.7e-39 167.9 197 51.3
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 3.6e-39 167.5 149 57.0
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 4.7e-39 167.2 189 54.0
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 6.1e-39 166.8 189 51.9
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 6.1e-39 166.8 189 51.9
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 8.0e-39 166.4 138 60.9
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 8.0e-39 166.4 137 60.6
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 1.4e-38 165.6 134 62.7
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 1.4e-38 165.6 134 62.7
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 1.4e-38 165.6 134 62.7
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 2.3e-38 164.9 198 49.0
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 3.9e-38 164.1 133 64.7
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 3.9e-38 164.1 194 49.5
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 8.8e-38 162.9 184 50.5
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 8.8e-38 162.9 140 60.0
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 8.8e-38 162.9 120 69.2
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 1.1e-37 162.5 693 68.5
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 2.0e-37 161.8 140 60.7
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.6e-37 161.4 206 49.0
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 3.3e-37 161.0 709 69.0
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 1.7e-36 158.7 133 61.7
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 1.7e-36 158.7 178 51.7
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 2.2e-36 158.3 194 48.5
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 4.8e-36 157.1 169 55.6
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 6.3e-36 156.8 115 71.3
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 1.1e-35 156.0 138 58.7
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 1.4e-35 155.6 684 73.5
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 1.8e-35 155.2 191 51.8
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 4.1e-35 154.1 125 64.0
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 4.1e-35 154.1 117 65.8
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 5.3e-35 153.7 173 50.9
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 5.3e-35 153.7 157 52.9
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 7.0e-35 153.3 161 53.4
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 9.1e-35 152.9 188 51.1
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 2.6e-34 151.4 132 61.4
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 4.5e-34 150.6 197 45.7
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 4.5e-34 150.6 120 66.7
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 5.0e-33 147.1 178 47.2
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 1.5e-32 145.6 118 61.9
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 2.5e-32 144.8 158 54.4
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 9.4e-32 142.9 94 78.7
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 2.3e-30 138.3 135 53.3
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 1.5e-29 135.6 110 61.8
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 5.3e-27 127.1 144 47.2
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.2e-26 125.9 164 47.0
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.2e-26 125.9 84 72.6
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 7.7e-26 123.2 81 69.1
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 5.0e-25 120.6 138 46.4
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.1e-24 119.4 84 65.5
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 1.5e-24 119.0 96 61.5
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 1.9e-24 118.6 80 70.0
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 1.2e-23 115.9 141 46.1
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 2.1e-23 115.2 79 70.9
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 6.1e-23 113.6 84 66.7
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 1.0e-22 112.8 113 52.2
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 1.4e-22 112.5 138 47.1
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 4.0e-22 110.9 138 46.4
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 6.8e-22 110.2 134 47.0
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 1.5e-21 109.0 188 39.9
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 1.0e-17 96.3 76 63.2
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.0e-14 86.3 60 65.0
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 1.5e-13 82.4 85 45.9
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 7.5e-13 80.1 59 64.4
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 2.8e-12 78.2 83 51.8
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 2.8e-12 78.2 83 51.8
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 3.7e-12 77.8 69 58.0
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 1.1e-11 76.3 109 36.7
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.4e-11 75.9 59 62.7
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 2.3e-09 68.6 136 33.8
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 2.3e-09 68.6 136 33.8


User provided reference genes

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