Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 0.0e+00 2834.7 1578 100.0
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 0.0e+00 2198.3 1559 79.7
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 0.0e+00 1499.2 1627 60.0
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1344.7 1617 55.8
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1314.3 1704 51.1
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.0e-308 1063.1 1205 56.3
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 3.9e-304 1048.9 1610 46.2
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 2.2e-302 1043.1 1684 44.8
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 1.4e-296 1023.8 1610 45.0
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 4.2e-282 975.7 1635 43.7
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 2.7e-276 956.4 1706 42.3
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 9.4e-274 948.0 1629 42.8
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 7.5e-271 938.3 1613 44.0
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 6.5e-267 925.2 1618 43.4
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 6.5e-267 925.2 1611 43.7
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.1e-266 924.5 1618 43.3
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 1.5e-266 924.1 1640 43.0
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.6e-265 920.6 1617 42.5
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.6e-265 919.5 1636 43.0
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 1.0e-264 917.9 1640 43.2
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.7e-257 892.5 1679 41.7
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 5.2e-256 889.0 1636 43.0
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 5.7e-255 885.6 1645 42.6
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.4e-253 880.9 1668 42.4
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 2.4e-253 880.2 1642 41.9
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 1.9e-250 870.5 1633 40.8
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 9.5e-250 868.2 1627 41.7
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.2e-249 867.8 1604 41.5
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 2.8e-249 866.7 1664 42.5
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 3.6e-249 866.3 1660 40.1
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.5e-247 858.6 1621 41.4
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 6.0e-244 849.0 1636 42.3
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 2.3e-243 847.0 1612 40.7
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 1.9e-242 844.0 1621 41.3
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 1.8e-240 837.4 1611 41.3
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 6.8e-240 835.5 1636 41.8
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.1e-237 828.2 1628 40.7
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.3e-235 821.2 1629 39.6
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.7e-235 820.8 1629 40.5
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.1e-234 818.1 1631 41.4
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.3e-234 816.6 1637 40.5
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.6e-233 814.3 1620 40.7
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.6e-233 814.3 1673 40.9
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 1.1e-229 801.6 1621 39.7
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 9.6e-226 788.5 1659 39.8
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.1e-225 787.3 1660 39.5
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 3.6e-225 786.6 1622 40.6
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 2.9e-222 776.9 1622 39.5
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.2e-220 771.5 1641 39.6
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.7e-219 767.7 1654 39.0
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 3.0e-219 766.9 1597 38.9
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 1.5e-218 764.6 1627 39.0
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 2.5e-218 763.8 1632 39.6
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 3.6e-217 760.0 1654 38.8
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 2.4e-216 757.3 1632 40.3
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.2e-212 745.0 1602 39.6
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.3e-211 741.5 1622 38.2
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 1.3e-209 734.9 1622 38.0
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 2.1e-209 734.2 1645 40.1
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.8e-208 731.1 1296 43.1
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 3.1e-208 730.3 1666 38.7
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 6.9e-208 729.2 1622 37.4
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 5.6e-202 709.5 1614 38.0
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.8e-200 704.5 1593 37.8
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.1e-200 703.7 1619 37.1
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.0e-198 698.7 1658 37.9
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.4e-197 694.9 1633 38.9
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 2.1e-196 691.0 1677 36.6
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 3.5e-196 690.3 1627 37.3
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.3e-195 688.3 1527 37.7
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 3.7e-193 680.2 1633 36.6
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 2.9e-190 670.6 1227 44.4
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 5.5e-189 666.4 1606 36.3
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.6e-188 664.8 1626 37.3
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 3.6e-188 663.7 1617 37.4
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.9e-186 657.9 1583 37.9
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 5.7e-186 656.4 1628 36.9
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 7.4e-186 656.0 1625 36.2
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.8e-184 651.4 1768 35.5
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 5.0e-182 643.3 1583 36.6
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 6.1e-180 636.3 1455 37.9
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 3.0e-179 634.0 1613 36.0
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.8e-177 627.5 1622 35.6
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 2.6e-170 604.4 1613 34.8
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 4.1e-168 597.0 1593 34.7
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.1e-165 589.0 1631 36.7
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 7.2e-165 586.3 1379 38.9
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 3.3e-162 577.4 1366 37.3
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.1e-160 570.9 1628 34.1
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 6.5e-158 563.1 1584 34.0
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 7.2e-157 559.7 1674 34.2
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.5e-151 540.4 698 53.9
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 1.9e-149 535.0 1601 33.9
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 4.9e-145 520.4 1703 33.6
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.4e-144 518.8 1412 34.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 2.4e-144 518.1 1581 34.6
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.0e-142 512.7 1728 32.8
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 4.9e-137 493.8 1605 32.0
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 2.0e-135 488.4 1611 32.7
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.6e-135 487.3 964 38.7
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 8.6e-134 483.0 1605 32.1
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 2.1e-132 478.4 1581 31.4
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 4.0e-131 474.2 1591 31.4
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 6.4e-129 466.8 696 46.4
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 4.6e-127 460.7 1597 31.0
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 7.3e-125 453.4 1629 30.8
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 2.1e-124 451.8 1608 31.8
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 2.8e-124 451.4 1607 31.7
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 6.8e-123 446.8 1593 32.0
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.5e-122 445.7 1594 32.0
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.5e-122 445.7 1647 31.2
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 7.5e-122 443.4 1611 29.9
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 7.8e-119 433.3 1516 31.7
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 4.7e-116 424.1 770 40.0
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.5e-114 419.1 324 71.9
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 3.8e-113 414.5 1601 30.9
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 5.4e-112 410.6 1596 30.3
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 9.2e-112 409.8 1597 30.6
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 4.6e-111 407.5 1594 31.3
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 3.0e-110 404.8 1520 30.9
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.9e-109 402.1 1506 30.9
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 2.4e-107 395.2 1668 30.9
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 5.8e-106 390.6 1576 29.6
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.9e-96 359.0 1443 29.3
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.1e-92 345.5 370 57.3
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 2.4e-91 342.0 1575 29.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.5e-90 337.8 488 48.8
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.5e-85 322.0 474 47.0
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 5.1e-78 297.7 1492 29.8
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.5e-66 259.6 193 74.6
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.5e-64 252.3 542 37.6
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.1e-61 243.4 193 71.0
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.3e-60 240.0 1481 28.1
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.2e-56 225.3 1262 27.7
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 5.5e-56 224.6 1398 26.5
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 7.2e-56 224.2 1623 26.7
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.8e-52 212.2 684 32.0
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.9e-48 199.5 189 59.8
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 9.7e-45 187.2 208 57.2
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 1.1e-35 157.1 1520 26.1
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.1e-35 157.1 1398 24.8
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.5e-26 125.6 186 48.4
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.4e-22 113.6 77 74.0
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 4.9e-20 105.1 540 33.0
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.9e-19 103.2 367 30.8
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 6.6e-17 94.7 179 39.1
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.6e-16 91.7 232 38.4
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.2e-15 90.5 191 37.2
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.1e-15 89.7 1356 23.2
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 2.0e-13 83.2 158 38.6
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 4.4e-13 82.0 981 25.2
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 9.8e-13 80.9 138 41.3
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 6.4e-12 78.2 178 37.1
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 7.0e-11 74.7 143 41.3
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 4.6e-10 72.0 142 43.7
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 5.1e-09 68.6 510 26.9
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.7e-07 62.0 149 36.9


User provided reference genes

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