Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0166600 Rhododendron simsii HOM05D011115 ORTHO05D013345 5.1e-156 554.3 263 100.0
Rhsim02G0174200 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.7e-34 150.6 104 67.3
Rhsim04G0188700 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.4e-25 120.9 104 51.9
RhsimUnG0069000 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.9e-25 120.6 104 51.9
Rhsim01G0222400 Rhododendron simsii HOM05D011115 ORTHO05D013345 4.6e-24 115.9 103 51.5
Rhsim13G0130500 Rhododendron simsii HOM05D011115 ORTHO05D013345 4.6e-24 115.9 103 51.5
Rhsim01G0025700 Rhododendron simsii HOM05D011115 ORTHO05D013345 7.8e-24 115.2 103 51.5
Rhsim11G0034200 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.0e-23 114.8 103 51.5
Rhsim12G0123400 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.3e-23 114.4 105 50.5
Rhsim04G0132700 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.2e-19 101.3 93 49.5
Rhsim01G0180000 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.4e-17 94.4 103 45.6
Rhsim09G0028400 Rhododendron simsii HOM05D011115 ORTHO05D013345 3.0e-15 86.7 81 49.4
Rhsim08G0085600 Rhododendron simsii HOM05D011115 ORTHO05D013345 3.9e-15 86.3 81 49.4
Rhsim04G0133300 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.1e-14 84.7 81 49.4
Rhsim02G0039800 Rhododendron simsii HOM05D011115 ORTHO05D013345 6.9e-12 75.5 57 56.1
SGA_v2.0_scaffold10G05247 Striga asiatica HOM05D000034 ORTHO05D000277 5.8e-11 72.4 106 38.7
Lsat_1_v5_gn_6_26421 Lactuca sativa HOM05D000034 ORTHO05D000277 4.9e-10 69.3 104 36.5
Rhsim02G0174400 Rhododendron simsii HOM05D011115 ORTHO05D013345 6.4e-10 68.9 49 63.3
Rhsim03G0124800 Rhododendron simsii HOM05D011115 ORTHO05D013345 6.4e-10 68.9 52 57.7
CSS0021233 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.1e-09 68.2 104 37.5
Lsat_1_v5_gn_5_163260 Lactuca sativa HOM05D000034 ORTHO05D000277 1.1e-09 68.2 106 36.8
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 1.9e-09 67.4 105 29.5
Actinidia26110 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.9e-09 67.4 105 29.5
vmacro15090 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.9e-09 67.4 105 28.6
Lsat_1_v5_gn_0_14981 Lactuca sativa HOM05D000034 ORTHO05D000277 2.4e-09 67.0 123 30.9
vmacro06986 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 2.4e-09 67.0 101 30.7
Rhsim02G0110600 Rhododendron simsii HOM05D000034 ORTHO05D000277 3.2e-09 66.6 106 29.2
vmacro22551 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.2e-09 66.6 111 28.8
vmacro22899 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.2e-09 66.6 111 28.8
CSS0031455 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.2e-09 66.2 104 29.8
CSS0010302 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 5.5e-09 65.9 104 28.8
CSS0013775 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.5e-09 65.9 105 28.6
CSS0015669 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 5.5e-09 65.9 104 28.8
CSS0024362 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 5.5e-09 65.9 104 28.8
CSS0040966 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 5.5e-09 65.9 104 28.8
vmacro00828 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 7.1e-09 65.5 99 31.3
vmacro08585 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 7.1e-09 65.5 99 30.3
CSS0036504 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 9.3e-09 65.1 104 34.6
CSS0036649 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 9.3e-09 65.1 104 34.6
CSS0044841 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 9.3e-09 65.1 104 34.6
CSS0047009 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 9.3e-09 65.1 104 34.6
CSS0016960 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.2e-08 64.7 103 28.2
CSS0033072 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.2e-08 64.7 104 27.9
Rhsim04G0178800 Rhododendron simsii HOM05D000034 ORTHO05D000277 1.2e-08 64.7 106 29.2
vmacro04370 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.2e-08 64.7 115 27.8
vmacro00489 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 2.1e-08 63.9 99 29.3
vmacro15929 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 2.1e-08 63.9 118 30.5
vmacro16960 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 2.1e-08 63.9 97 33.0
CSS0036595 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 2.7e-08 63.5 100 30.0
Thecc.09G268100 Theobroma cacao HOM05D000034 ORTHO05D000277 2.7e-08 63.5 106 33.0
TWI34G1435 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 2.7e-08 63.5 104 31.7
CSS0028844 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 3.5e-08 63.2 104 33.7
PGR031G0918 Punica granatum HOM05D000034 ORTHO05D000277 3.5e-08 63.2 119 30.3
vmacro00234 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.5e-08 63.2 99 29.3
vmacro16065 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.5e-08 63.2 106 31.1
vmacro20771 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.5e-08 63.2 116 30.2
MBI14_g32135_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.6e-08 62.8 104 34.6
vmacro15511 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 4.6e-08 62.8 99 28.3
CSS0042392 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 6.0e-08 62.4 104 27.9
PGR102G0395 Punica granatum HOM05D000034 ORTHO05D000277 6.0e-08 62.4 106 30.2
vmacro07178 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 6.0e-08 62.4 99 30.3
Rhsim05G0104200 Rhododendron simsii HOM05D000034 ORTHO05D000277 7.9e-08 62.0 105 27.6
vmacro19568 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 7.9e-08 62.0 99 28.3
vmacro21923 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 7.9e-08 62.0 105 28.6
Actinidia16895 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.3e-07 61.2 106 32.1
PGR142G3888 Punica granatum HOM05D000034 ORTHO05D000277 1.3e-07 61.2 103 30.1
vmacro09022 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.3e-07 61.2 98 28.6
MELO3C028082.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.8e-07 60.8 102 30.4
PGR102G2952 Punica granatum HOM05D000034 ORTHO05D000277 1.8e-07 60.8 104 30.8
vmacro05125 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.8e-07 60.8 98 28.6
vmacro05218 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.8e-07 60.8 98 28.6
vmacro07016 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.8e-07 60.8 98 28.6
vmacro10340 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.8e-07 60.8 98 28.6
CSS0033959 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 2.3e-07 60.5 122 27.9
MELO3C035642.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.3e-07 60.5 104 31.7
Hma1.2p1_0587F.1_g184020 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.3e-07 60.5 114 32.5
Hma1.2p1_1276F.1_g272080 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.3e-07 60.5 115 32.2
vmacro03716 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 2.3e-07 60.5 95 31.6
Actinidia33700 Actinidia chinensis HOM05D000034 ORTHO05D000277 3.0e-07 60.1 102 28.4
Actinidia38160 Actinidia chinensis HOM05D000034 ORTHO05D000277 3.0e-07 60.1 102 27.5
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 3.0e-07 60.1 101 31.7
MBI18_g40970_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.0e-07 60.1 97 29.9
ECA240G4698 Erigeron canadensis HOM05D000593 ORTHO05D000562 3.9e-07 59.7 101 31.7
ECA246G4240 Erigeron canadensis HOM05D000034 ORTHO05D000037 3.9e-07 59.7 101 31.7
MBI15_g04206_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.9e-07 59.7 112 32.1
vmacro22681 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.9e-07 59.7 122 24.6
Zm00001eb055250 Zea mays HOM05D000034 ORTHO05D000277 3.9e-07 59.7 107 27.1
Atru.chr6.37 Acer truncatum HOM05D000034 ORTHO05D000037 5.1e-07 59.3 105 29.5
MELO3C033417.2 Cucumis melo HOM05D001651 ORTHO05D009716 5.1e-07 59.3 102 29.4
FvH4_5g01520 Fragaria vesca HOM05D008011 ORTHO05D000277 5.1e-07 59.3 103 27.2
FAN08G2404 Fragaria x ananassa HOM05D008011 ORTHO05D000277 5.1e-07 59.3 103 28.2
FAN18G3785 Fragaria x ananassa HOM05D008011 ORTHO05D000277 5.1e-07 59.3 103 27.2
PGR044G2465 Punica granatum HOM05D000034 ORTHO05D000277 5.1e-07 59.3 120 29.2
EL10Ac2g03585 Beta vulgaris HOM05D000034 ORTHO05D000277 6.7e-07 58.9 99 26.3
EL10Ac9g22471 Beta vulgaris HOM05D000034 ORTHO05D000277 6.7e-07 58.9 99 26.3
Hma1.2p1_0084F.1_g043280 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.7e-07 58.9 140 30.0
Hma1.2p1_0633F.1_g192570 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.7e-07 58.9 115 30.4
MBI14_g36869_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 6.7e-07 58.9 77 36.4
MELO3C032240.2 Cucumis melo HOM05D001651 ORTHO05D000277 8.7e-07 58.5 102 29.4
vmacro02413 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 8.7e-07 58.5 95 30.5
vmacro07109 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 8.7e-07 58.5 99 27.3
Hma1.2p1_2244F.1_g317920 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.1e-06 58.2 104 33.7
vmacro08376 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.1e-06 58.2 98 27.6
vmacro17493 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.1e-06 58.2 98 29.6
vmacro17940 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.1e-06 58.2 108 31.5
Actinidia05901 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.5e-06 57.8 115 27.8
Hma1.2p1_0207F.1_g087800 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.5e-06 57.8 104 33.7
Hma1.2p1_1929F.1_g307890 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.9e-06 57.4 106 33.0
MBI03_g05130_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.9e-06 57.4 108 33.3
MBI15_g29361_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.9e-06 57.4 98 29.6
MBI18_g09620_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.9e-06 57.4 104 29.8
MD06G1073100 Malus domestica HOM05D008011 ORTHO05D000277 1.9e-06 57.4 103 23.3
MELO3C035680.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.5e-06 57.0 102 28.4
FAN28G1917 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.5e-06 57.0 104 29.8
Hma1.2p1_0203F.1_g086660 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.5e-06 57.0 114 31.6
Hma1.2p1_2228F.1_g317520 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.5e-06 57.0 102 32.4
PGR031G0842 Punica granatum HOM05D000034 ORTHO05D000277 2.5e-06 57.0 97 32.0
PGR142G3826 Punica granatum HOM05D000034 ORTHO05D000277 2.5e-06 57.0 104 28.8
MELO3C008748.2 Cucumis melo HOM05D001651 ORTHO05D000277 3.3e-06 56.6 102 30.4
MELO3C034777.2 Cucumis melo HOM05D001651 ORTHO05D000277 3.3e-06 56.6 102 29.4
Rhsim01G0203500 Rhododendron simsii HOM05D000034 ORTHO05D000277 3.3e-06 56.6 103 30.1
Zm00001eb044120 Zea mays HOM05D000034 ORTHO05D000277 3.3e-06 56.6 101 27.7
Zm00001eb092060 Zea mays HOM05D000034 ORTHO05D000277 3.3e-06 56.6 101 27.7
Hma1.2p1_1553F.1_g290400 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.3e-06 56.2 111 31.5
Zm00001eb153640 Zea mays HOM05D000034 ORTHO05D000277 4.3e-06 56.2 101 27.7
EL10Ac9g22348 Beta vulgaris HOM05D000034 ORTHO05D000277 5.6e-06 55.8 104 26.0
AUR62000104 Chenopodium quinoa HOM05D000034 ORTHO05D000277 5.6e-06 55.8 104 26.0
MELO3C032742.2 Cucumis melo HOM05D001651 ORTHO05D000277 5.6e-06 55.8 97 29.9
Hma1.2p1_0096F.1_g047690 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.6e-06 55.8 106 33.0
Atru.chr2.2599 Acer truncatum HOM05D000034 ORTHO05D000277 7.4e-06 55.5 104 31.7
MELO3C032206.2 Cucumis melo HOM05D001651 ORTHO05D000277 7.4e-06 55.5 102 29.4
Dinv26541 Davidia involucrata HOM05D000034 ORTHO05D000277 7.4e-06 55.5 105 30.5
vmacro14528 Vaccinium macrocarpon HOM05D000034 ORTHO05D000037 7.4e-06 55.5 117 29.1
AUR62020769 Chenopodium quinoa HOM05D000034 ORTHO05D000277 9.6e-06 55.1 99 26.3
FvH4_1g08720 Fragaria vesca HOM05D000034 ORTHO05D000037 9.6e-06 55.1 100 29.0
FvH4_6g20010 Fragaria vesca HOM05D008011 ORTHO05D000277 9.6e-06 55.1 98 29.6
FAN13G0966 Fragaria x ananassa HOM05D008011 ORTHO05D000277 9.6e-06 55.1 94 27.7
MBI14_g11626_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.6e-06 55.1 52 44.2
Rhsim10G0122700 Rhododendron simsii HOM05D000034 ORTHO05D000277 9.6e-06 55.1 106 25.5
Zm00001eb030860 Zea mays HOM05D000034 ORTHO05D000277 9.6e-06 55.1 101 26.7
Zm00001eb080450 Zea mays HOM05D000034 ORTHO05D000277 9.6e-06 55.1 102 26.5
Zm00001eb430660 Zea mays HOM05D000034 ORTHO05D000277 9.6e-06 55.1 101 26.7


User provided reference genes

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