Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 0.0e+00 1551.6 767 100.0
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.5e-293 1012.7 728 72.8
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.6e-263 912.9 694 66.1
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 8.1e-255 884.0 696 63.5
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.6e-253 877.5 694 66.6
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 7.6e-253 877.5 693 63.3
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.4e-248 860.9 697 65.7
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 2.5e-235 819.3 697 59.7
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 3.9e-233 812.0 697 58.7
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 4.3e-232 808.5 694 59.1
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 9.0e-230 800.8 697 57.7
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 8.5e-228 794.3 703 57.8
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.9e-227 793.1 682 58.5
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 7.2e-227 791.2 680 59.4
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.2e-226 790.4 691 58.3
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 7.9e-226 787.7 684 59.1
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 6.9e-222 774.6 693 56.6
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 5.0e-220 768.5 692 55.9
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 6.5e-220 768.1 688 56.5
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 3.2e-219 765.8 690 56.8
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 3.2e-219 765.8 693 56.1
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 5.5e-219 765.0 701 56.3
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 7.2e-219 764.6 684 56.9
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 4.7e-218 761.9 710 55.8
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 7.9e-218 761.1 693 56.0
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 3.0e-217 759.2 708 53.1
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.5e-216 756.9 688 54.1
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 1.5e-216 756.9 686 55.5
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.0e-216 756.5 688 55.8
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 5.7e-216 755.0 688 55.8
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 3.7e-215 752.3 688 56.1
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 6.3e-215 751.5 681 56.1
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 2.4e-214 749.6 694 56.3
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 5.3e-214 748.4 696 55.2
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 2.9e-212 742.7 689 55.7
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 3.8e-212 742.3 688 53.2
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 8.8e-209 731.1 688 55.7
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.2e-207 726.5 688 54.8
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 6.3e-207 724.9 690 53.6
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 5.3e-206 721.8 720 53.1
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 2.9e-204 716.1 686 53.8
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 3.8e-204 715.7 847 47.7
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 3.8e-204 715.7 687 54.4
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 6.5e-204 714.9 698 53.0
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 2.5e-203 713.0 672 53.4
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 4.7e-202 708.8 678 55.3
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 6.1e-202 708.4 590 59.3
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 4.8e-199 698.7 683 53.9
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.7e-196 690.3 685 52.0
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.1e-195 687.6 684 53.5
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 5.5e-195 685.3 686 53.1
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.7e-194 682.9 746 48.8
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.6e-194 682.6 684 52.0
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 6.1e-194 681.8 729 48.6
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 1.4e-193 680.6 681 51.1
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 9.8e-192 674.5 689 50.4
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 9.8e-192 674.5 684 51.0
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.7e-191 673.7 698 50.1
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 6.3e-191 671.8 697 49.4
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.4e-190 670.6 679 50.5
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.6e-189 667.2 696 49.4
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 7.7e-189 664.8 727 49.4
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 7.7e-189 664.8 690 49.7
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.0e-188 664.5 682 50.1
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 2.3e-188 663.3 679 49.3
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 5.0e-188 662.1 688 50.1
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 8.9e-185 651.4 748 46.5
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.2e-184 651.0 642 51.9
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 7.5e-184 648.3 690 48.7
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 1.7e-183 647.1 708 48.4
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 2.2e-183 646.7 686 50.3
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 8.3e-183 644.8 684 49.6
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.5e-179 634.0 693 48.2
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 4.4e-176 622.5 684 48.1
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 7.0e-174 615.1 700 48.0
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 7.3e-171 605.1 646 49.5
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 4.7e-170 602.4 684 47.1
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 2.2e-167 593.6 700 47.1
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 2.4e-166 590.1 724 44.6
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.1e-165 587.0 423 70.4
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.0e-164 583.2 702 47.6
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.1e-163 581.3 698 46.0
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.2e-162 575.5 729 45.0
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.1e-158 564.7 723 44.3
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.6e-157 560.8 682 43.7
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 2.1e-154 550.4 628 50.0
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 8.9e-153 545.0 431 62.6
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.4e-150 537.7 614 49.7
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 3.5e-141 506.5 455 55.6
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.6e-138 497.7 687 41.5
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 6.9e-137 492.3 498 51.8
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 1.5e-128 464.5 687 40.5
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 2.0e-128 464.2 458 53.7
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 7.1e-126 455.7 708 37.3
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 8.7e-116 422.2 374 56.7
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 2.4e-113 414.1 661 37.1
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.1e-110 405.2 279 72.0
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 2.4e-105 387.5 627 35.7
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.3e-97 359.8 569 35.5
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 5.0e-87 326.6 305 52.8
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 3.0e-84 317.4 270 56.3
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-74 284.3 391 36.8
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 3.8e-71 273.9 271 50.6
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.9e-70 271.6 163 81.0
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 9.5e-70 269.2 230 59.6
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 4.9e-66 256.9 229 53.3
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 5.0e-63 246.9 216 57.9
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 9.9e-51 206.1 250 45.2
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 1.9e-49 201.8 182 56.6
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-45 189.1 381 30.2
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 4.9e-42 177.2 118 69.5
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 4.1e-41 174.1 531 28.1
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 6.2e-37 160.2 168 47.0
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.1e-36 159.5 185 45.4
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 3.4e-35 154.5 159 51.6
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.4e-33 148.3 86 81.4
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.1e-33 146.7 86 81.4
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-32 146.0 335 28.1
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.7e-32 144.8 92 76.1
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.9e-31 141.0 366 28.4
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.2e-29 133.7 182 41.2
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-28 132.1 191 34.6
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.3e-28 130.6 92 71.7
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 6.9e-28 130.2 88 68.2
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.9e-28 130.2 367 28.1
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-27 128.3 365 27.4
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.6e-27 126.7 432 24.3
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 3.8e-26 124.4 143 44.8
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 3.0e-23 114.8 88 63.6
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 1.6e-21 109.0 357 26.3
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-21 109.0 365 25.8
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.8e-21 108.2 92 62.0
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.0e-20 103.2 200 32.5
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 2.0e-19 102.1 103 51.5
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 9.9e-19 99.8 506 23.3
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 5.5e-17 94.0 108 46.3
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.6e-16 92.4 447 24.4
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.6e-16 90.9 152 30.9
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.9e-15 87.8 281 27.0
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 6.7e-15 87.0 84 51.2
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.6e-14 83.2 190 33.7
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.6e-14 83.2 178 29.8
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-12 79.7 171 28.1
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.4e-12 79.3 118 34.7
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.1e-12 78.2 45 82.2
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 5.3e-12 77.4 104 46.2
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 6.9e-12 77.0 77 50.6
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 6.9e-12 77.0 58 63.8
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 9.0e-12 76.6 79 49.4
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.6e-11 73.6 42 81.0
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.7e-10 72.4 57 59.6
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 4.9e-10 70.9 45 68.9
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 1.9e-09 68.9 58 60.3
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.5e-09 68.6 87 40.2
CSS0007257 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 4.6e-08 64.3 50 70.0
CSS0018695 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 3.0e-07 61.6 50 68.0
CSS0005932 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 8.7e-07 60.1 50 68.0
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.1e-06 59.7 34 73.5
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 2.5e-06 58.5 45 55.6


User provided reference genes

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