Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0150400 Rhododendron simsii HOM05D000230 ORTHO05D011561 1.1e-43 179.5 89 100.0
Rhsim06G0129700 Rhododendron simsii HOM05D000230 ORTHO05D011561 6.3e-26 120.6 76 80.3
CSS0025970 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 2.9e-23 111.7 70 82.9
Rhsim08G0183600 Rhododendron simsii HOM05D000230 ORTHO05D000176 3.2e-22 108.2 71 81.7
vmacro19251 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 9.4e-22 106.7 70 80.0
Rhsim08G0145500 Rhododendron simsii HOM05D000230 ORTHO05D011561 2.6e-19 98.6 66 75.8
Actinidia16195 Actinidia chinensis HOM05D000230 ORTHO05D000176 4.4e-19 97.8 70 75.7
VMungo1309G0134 Vigna mungo HOM05D000230 ORTHO05D000176 1.3e-18 96.3 70 71.4
TWI39G0021 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 1.7e-18 95.9 70 71.4
Eucgr.B00160 Eucalyptus grandis HOM05D000230 ORTHO05D000176 2.8e-18 95.1 70 71.4
Lalb_Chr08g0236921 Lupinus albus HOM05D000230 ORTHO05D000176 3.7e-18 94.7 70 68.6
THA.LOC104818199 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 4.8e-18 94.4 70 70.0
Psat5g141400 Pisum sativum HOM05D000230 ORTHO05D000176 6.3e-18 94.0 70 67.1
Phvul.009G169400 Phaseolus vulgaris HOM05D000230 ORTHO05D000176 1.4e-17 92.8 70 70.0
Glyma.06G173500 Glycine max HOM05D000230 ORTHO05D000176 1.8e-17 92.4 70 68.6
CiPaw.12G035300 Carya illinoinensis HOM05D000230 ORTHO05D000176 2.4e-17 92.0 70 68.6
Aqoxy3G01312 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 3.1e-17 91.7 70 67.1
Haze_07284 Corylus avellana HOM05D000230 ORTHO05D000176 4.1e-17 91.3 70 67.1
PGR083G1307 Punica granatum HOM05D000230 ORTHO05D000176 4.1e-17 91.3 70 68.6
GSVIVG01007559001 Vitis vinifera HOM05D000230 ORTHO05D000176 4.1e-17 91.3 70 70.0
arahy.Tifrunner.gnm1.ann1.7ID4BS Arachis hypogaea HOM05D000230 ORTHO05D000176 5.4e-17 90.9 70 70.0
arahy.Tifrunner.gnm1.ann1.BW67JI Arachis hypogaea HOM05D000230 ORTHO05D000176 5.4e-17 90.9 70 70.0
Ca_16095_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 5.4e-17 90.9 70 64.3
Prupe.5G158100 Prunus persica HOM05D000230 ORTHO05D000176 5.4e-17 90.9 70 67.1
TPR.G26140 Trifolium pratense HOM05D000230 ORTHO05D000176 5.4e-17 90.9 72 66.7
Lj1g0003834 Lotus japonicus HOM05D000230 ORTHO05D000176 7.0e-17 90.5 70 65.7
BcaB02g09327 Brassica carinata HOM05D000230 ORTHO05D000176 9.1e-17 90.1 70 68.6
Thhalv10016126m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 9.1e-17 90.1 70 68.6
TAR622G1283 Trochodendron aralioides HOM05D000230 ORTHO05D000176 9.1e-17 90.1 70 67.1
EL10Ac7g18059 Beta vulgaris HOM05D000230 ORTHO05D000176 1.2e-16 89.7 70 68.6
MD06G1158200 Malus domestica HOM05D000230 ORTHO05D000176 1.6e-16 89.4 70 65.7
Oeu011583.2 Olea europaea HOM05D000230 ORTHO05D000176 1.6e-16 89.4 70 68.6
Sp4g19130 Schrenkiella parvula HOM05D000230 ORTHO05D000176 1.6e-16 89.4 70 68.6
AT2G36850 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 2.0e-16 89.0 70 67.1
BcaC02g11806 Brassica carinata HOM05D000230 ORTHO05D000176 2.0e-16 89.0 70 67.1
BcaC02g11807 Brassica carinata HOM05D000230 ORTHO05D011561 2.0e-16 89.0 70 67.1
A05p09030 Brassica napus HOM05D000230 ORTHO05D000176 2.0e-16 89.0 70 67.1
C04p11160 Brassica napus HOM05D000230 ORTHO05D000176 2.0e-16 89.0 70 67.1
BolC4t22763H Brassica oleracea HOM05D000230 ORTHO05D000176 2.0e-16 89.0 70 67.1
BraA05t19864Z Brassica rapa HOM05D000230 ORTHO05D000176 2.0e-16 89.0 70 67.1
CARHR131310 Cardamine hirsuta HOM05D000230 ORTHO05D000176 2.7e-16 88.6 70 68.6
Dinv11114 Davidia involucrata HOM05D000230 ORTHO05D000176 3.5e-16 88.2 70 68.6
RcHm_v2.0_Chr7g0191411 Rosa chinensis HOM05D000230 ORTHO05D000176 3.5e-16 88.2 70 67.1
AL4G33060 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 4.5e-16 87.8 70 65.7
CANSAT80G0238 Cannabis sativa HOM05D000230 ORTHO05D000176 4.5e-16 87.8 68 69.1
Medtr3g075180 Medicago truncatula HOM05D000230 ORTHO05D000176 4.5e-16 87.8 72 65.3
Sopen03g030690 Solanum pennellii HOM05D000230 ORTHO05D000176 4.5e-16 87.8 70 68.6
Manes.06G114500 Manihot esculenta HOM05D000230 ORTHO05D000176 5.9e-16 87.4 70 67.1
MD14G1164800 Malus domestica HOM05D000230 ORTHO05D000176 7.7e-16 87.0 70 65.7
CAN.G472.41 Capsicum annuum HOM05D000230 ORTHO05D000176 1.0e-15 86.7 70 68.6
AUR62001267 Chenopodium quinoa HOM05D000230 ORTHO05D000176 1.3e-15 86.3 70 65.7
AUR62025743 Chenopodium quinoa HOM05D000230 ORTHO05D000176 1.3e-15 86.3 70 65.7
Nn4g22481 Nelumbo nucifera HOM05D000230 ORTHO05D000176 2.3e-15 85.5 70 64.3
Hund05624 Selenicereus undatus HOM05D000230 ORTHO05D000176 2.3e-15 85.5 70 65.7
Cfa018899 Carpinus fangiana HOM05D000230 ORTHO05D000176 2.9e-15 85.1 70 65.7
Ciclev10018456m.g Citrus clementina HOM05D000230 ORTHO05D000176 3.8e-15 84.7 70 65.7
Thecc.03G121600 Theobroma cacao HOM05D000230 ORTHO05D000176 3.8e-15 84.7 72 66.7
ClCG06G017700 Citrullus lanatus HOM05D000230 ORTHO05D000176 5.0e-15 84.3 70 62.9
MELO3C026219.2 Cucumis melo HOM05D000230 ORTHO05D000176 5.0e-15 84.3 70 62.9
DCAR_016419 Daucus carota HOM05D000230 ORTHO05D000176 5.0e-15 84.3 70 65.7
Gohir.D03G103400 Gossypium hirsutum HOM05D000230 ORTHO05D000176 5.0e-15 84.3 72 66.7
Gorai.003G109000 Gossypium raimondii HOM05D000230 ORTHO05D000176 5.0e-15 84.3 72 66.7
MBI04_g22931_MAGBIO Magnolia biondii HOM05D000230 ORTHO05D000176 6.6e-15 84.0 70 64.3
Sed0009436 Sechium edule HOM05D000230 ORTHO05D000176 8.6e-15 83.6 70 64.3
Peaxi162Scf00089g00839 Petunia axillaris HOM05D000230 ORTHO05D000176 1.1e-14 83.2 70 65.7
SalBow7G0261 Salvia bowleyana HOM05D000230 ORTHO05D000176 1.1e-14 83.2 70 64.3
FAN04G3118 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.5e-14 82.8 70 62.9
SGA_v2.0_scaffold102G29867 Striga asiatica HOM05D000230 ORTHO05D000176 2.5e-14 82.0 70 64.3
CsaV3_1G000760 Cucumis sativus L. HOM05D000230 ORTHO05D000176 3.3e-14 81.6 70 61.4
FAN13G0007 Fragaria x ananassa HOM05D000230 ORTHO05D000176 3.3e-14 81.6 70 62.9
COL.COLO4_08558 Corchorus olitorius HOM05D000230 ORTHO05D011561 5.5e-14 80.9 72 63.9
FvH4_5g07240 Fragaria vesca HOM05D000230 ORTHO05D000176 5.5e-14 80.9 70 62.9
FAN18G1505 Fragaria x ananassa HOM05D000230 ORTHO05D000176 5.5e-14 80.9 70 62.9
Sabra15G0111900 Salix brachista HOM05D000230 ORTHO05D000176 5.5e-14 80.9 70 65.7
Aa31LG5G22080 Aethionema arabicum HOM05D000230 ORTHO05D000176 7.2e-14 80.5 70 62.9
Migut.I00262 Erythranthe guttata HOM05D000230 ORTHO05D000176 9.5e-14 80.1 67 64.2
Gohir.A03G062700 Gossypium hirsutum HOM05D000230 ORTHO05D000176 9.5e-14 80.1 67 67.2
Lj9C474G13 Lonicera japonica HOM05D000230 ORTHO05D000176 1.6e-13 79.3 70 62.9
Sed0027476 Sechium edule HOM05D000230 ORTHO05D000176 1.6e-13 79.3 70 60.0
Cpa.g.sc4.62 Carica papaya HOM05D000230 ORTHO05D011561 2.1e-13 79.0 70 61.4
Prupe.5G181200 Prunus persica HOM05D000230 ORTHO05D011561 2.1e-13 79.0 66 63.6
TAR374G1342 Trochodendron aralioides HOM05D000230 ORTHO05D000176 2.8e-13 78.6 70 58.6
Potri.015G089300 Populus trichocarpa HOM05D000230 ORTHO05D000176 4.7e-13 77.8 70 64.3
ECA232G0347 Erigeron canadensis HOM05D000230 ORTHO05D000176 6.1e-13 77.4 70 60.0
Lsat_1_v5_gn_4_79080 Lactuca sativa HOM05D000230 ORTHO05D000176 6.1e-13 77.4 70 61.4
Duzib084G0430 Durio zibethinus HOM05D000230 ORTHO05D000176 1.0e-12 76.6 72 62.5
Atru.chr9.999 Acer truncatum HOM05D000230 ORTHO05D000176 1.4e-12 76.3 70 61.4
PSO729G0270 Papaver somniferum HOM05D000230 ORTHO05D000176 1.4e-12 76.3 71 62.0
CDE03G0271 Ceratophyllum demersum HOM05D000230 ORTHO05D000176 3.0e-12 75.1 70 57.1
Potri.015G089500 Populus trichocarpa HOM05D000230 ORTHO05D011561 3.0e-12 75.1 70 61.4
SHI17254 Sapria himalayana HOM05D000230 ORTHO05D000176 3.0e-12 75.1 65 63.1
HPP92_025452 Vanilla planifolia HOM05D000230 ORTHO05D000176 3.0e-12 75.1 65 61.5
CDE06G1289 Ceratophyllum demersum HOM05D000230 ORTHO05D000176 6.8e-12 73.9 70 57.1
PSO017G0382 Papaver somniferum HOM05D000230 ORTHO05D000176 6.8e-12 73.9 74 58.1
PSO478G2681 Papaver somniferum HOM05D000230 ORTHO05D000176 6.8e-12 73.9 74 58.1
ATR0057G083 Amborella trichopoda HOM05D000230 ORTHO05D000176 8.9e-12 73.6 70 57.1
FAN08G3494 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.2e-11 73.2 70 60.0
SEGI_35659 Sequoiadendron giganteum HOM05D000230 ORTHO05D000176 1.2e-11 73.2 78 55.1
HanXRQChr09g0272811 Helianthus annuus HOM05D000230 ORTHO05D000176 3.4e-11 71.6 70 54.3
unitig_26.g9677 Utricularia gibba HOM05D000230 ORTHO05D000176 2.8e-10 68.6 70 57.1
CsaV3_1G042280 Cucumis sativus L. HOM05D000230 ORTHO05D000176 3.7e-10 68.2 78 51.3
Medtr1g116470 Medicago truncatula HOM05D000230 ORTHO05D000176 3.7e-10 68.2 78 51.3
SEGI_13556 Sequoiadendron giganteum HOM05D000230 ORTHO05D011561 3.7e-10 68.2 71 54.9
MELO3C015654.2 Cucumis melo HOM05D000230 ORTHO05D000176 4.9e-10 67.8 78 51.3
ClCG03G013800 Citrullus lanatus HOM05D000230 ORTHO05D011561 6.3e-10 67.4 71 52.1
PSO541G3128 Papaver somniferum HOM05D000230 ORTHO05D000176 6.3e-10 67.4 78 51.3
PSO675G5254 Papaver somniferum HOM05D000230 ORTHO05D000176 6.3e-10 67.4 78 51.3
FvH4_3g44320 Fragaria vesca HOM05D000230 ORTHO05D000176 8.3e-10 67.0 74 51.4
FAN11G1332 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.3e-10 67.0 74 51.4
FAN16G0763 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.3e-10 67.0 74 51.4
Rhsim13G0227300 Rhododendron simsii HOM05D000230 ORTHO05D000176 8.3e-10 67.0 78 51.3
Atru.chr3.2120 Acer truncatum HOM05D000230 ORTHO05D000176 1.1e-09 66.6 95 45.3
Lalb_Chr06g0164441 Lupinus albus HOM05D000230 ORTHO05D000176 1.1e-09 66.6 78 50.0
Aqoxy2G00054 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 1.4e-09 66.2 78 52.6
arahy.Tifrunner.gnm1.ann1.APBP9F Arachis hypogaea HOM05D000230 ORTHO05D000176 1.4e-09 66.2 78 50.0
Sed0002246 Sechium edule HOM05D000230 ORTHO05D000176 1.4e-09 66.2 78 50.0
FAN25G2157 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.4e-09 65.5 74 50.0
Glyma.10G295100 Glycine max HOM05D000230 ORTHO05D000176 2.4e-09 65.5 78 47.4
RcHm_v2.0_Chr5g0080681 Rosa chinensis HOM05D000230 ORTHO05D000176 2.4e-09 65.5 74 48.6
TAR636G2721 Trochodendron aralioides HOM05D000230 ORTHO05D000176 2.4e-09 65.5 78 52.6
vmacro21755 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 2.4e-09 65.5 70 52.9
ATR0807G106 Amborella trichopoda HOM05D000230 ORTHO05D000176 4.1e-09 64.7 78 50.0
Prupe.6G014200 Prunus persica HOM05D000230 ORTHO05D000176 4.1e-09 64.7 78 48.7
SEGI_13729 Sequoiadendron giganteum HOM05D000230 ORTHO05D011561 4.1e-09 64.7 72 52.8
Atru.chr3.2121 Acer truncatum HOM05D000230 ORTHO05D000176 5.4e-09 64.3 78 50.0
Dinv36325 Davidia involucrata HOM05D000230 ORTHO05D000176 5.4e-09 64.3 78 48.7
Ciclev10014530m.g Citrus clementina HOM05D000230 ORTHO05D000176 7.0e-09 63.9 78 51.3
VMungo0720G2974 Vigna mungo HOM05D000230 ORTHO05D000176 7.0e-09 63.9 78 48.7
arahy.Tifrunner.gnm1.ann1.B2MCR2 Arachis hypogaea HOM05D000230 ORTHO05D000176 9.2e-09 63.5 78 48.7
ECA248G2824 Erigeron canadensis HOM05D000230 ORTHO05D000176 9.2e-09 63.5 71 52.1
Phvul.007G004900 Phaseolus vulgaris HOM05D000230 ORTHO05D000176 9.2e-09 63.5 78 48.7
SMO238G0026 Selaginella moellendorffii HOM05D000230 ORTHO05D000176 9.2e-09 63.5 65 53.8
Cfa009641 Carpinus fangiana HOM05D000230 ORTHO05D000176 1.2e-08 63.2 78 51.3
EL10Ac4g10332 Beta vulgaris HOM05D000230 ORTHO05D000176 1.6e-08 62.8 70 51.4
Lj5g0013786 Lotus japonicus HOM05D000230 ORTHO05D000176 1.6e-08 62.8 75 49.3
Manes.15G103700 Manihot esculenta HOM05D000230 ORTHO05D000176 1.6e-08 62.8 78 51.3
Cc01_g03350 Coffea canephora HOM05D000230 ORTHO05D000176 2.0e-08 62.4 78 48.7
Glyma.20G244900 Glycine max HOM05D000230 ORTHO05D000176 2.0e-08 62.4 78 46.2
Nn7g36008 Nelumbo nucifera HOM05D000230 ORTHO05D000176 2.0e-08 62.4 78 50.0
Duzib168G1855 Durio zibethinus HOM05D000230 ORTHO05D000176 2.7e-08 62.0 78 50.0
Lsat_1_v5_gn_1_68521 Lactuca sativa HOM05D000230 ORTHO05D000176 2.7e-08 62.0 63 54.0
CSS0003356 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D011561 3.5e-08 61.6 66 53.0
CSS0037633 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D011561 3.5e-08 61.6 66 53.0
QL01p009880 Quercus lobata HOM05D000230 ORTHO05D000176 3.5e-08 61.6 70 52.9
RcHm_v2.0_Chr5g0080671 Rosa chinensis HOM05D000230 ORTHO05D011561 3.5e-08 61.6 72 47.2
Thecc.09G217000 Theobroma cacao HOM05D000230 ORTHO05D000176 3.5e-08 61.6 80 52.5
CANSAT54G2811 Cannabis sativa HOM05D000230 ORTHO05D000176 4.5e-08 61.2 78 47.4
Lj1A479G20 Lonicera japonica HOM05D000230 ORTHO05D000176 4.5e-08 61.2 78 47.4
CiPaw.13G170500 Carya illinoinensis HOM05D000230 ORTHO05D000176 5.9e-08 60.8 78 47.4
AUR62019214 Chenopodium quinoa HOM05D000230 ORTHO05D000176 5.9e-08 60.8 74 50.0
TPR.G10406 Trifolium pratense HOM05D000230 ORTHO05D000176 5.9e-08 60.8 73 49.3
TWI60G0944 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 5.9e-08 60.8 78 48.7
GSVIVG01025372001 Vitis vinifera HOM05D000230 ORTHO05D000176 5.9e-08 60.8 78 48.7
CDE02G2435 Ceratophyllum demersum HOM05D000230 ORTHO05D000176 7.8e-08 60.5 78 47.4
AUR62000044 Chenopodium quinoa HOM05D000230 ORTHO05D000176 1.0e-07 60.1 74 50.0
Ca_11391_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 1.0e-07 60.1 78 46.2
Psat6g241680 Pisum sativum HOM05D000230 ORTHO05D000176 1.0e-07 60.1 78 47.4
Sabra01G0008900 Salix brachista HOM05D000230 ORTHO05D000176 1.3e-07 59.7 78 50.0
Hund21654 Selenicereus undatus HOM05D000230 ORTHO05D000176 1.3e-07 59.7 74 50.0
Lalb_Chr02g0144251 Lupinus albus HOM05D000230 ORTHO05D011561 1.7e-07 59.3 73 43.8
Os06g0113150 Oryza sativa ssp. japonica HOM05D000230 ORTHO05D000176 1.7e-07 59.3 68 47.1
PGR102G2873 Punica granatum HOM05D000230 ORTHO05D000176 1.7e-07 59.3 78 48.7
Sc09g0000350 Simmondsia chinensis HOM05D000230 ORTHO05D000176 1.7e-07 59.3 78 48.7
Eucgr.B03640 Eucalyptus grandis HOM05D000230 ORTHO05D000176 2.3e-07 58.9 74 50.0
MD11G1016100 Malus domestica HOM05D000230 ORTHO05D000176 2.3e-07 58.9 78 44.9
Os03g0119500 Oryza sativa ssp. japonica HOM05D000230 ORTHO05D000176 2.3e-07 58.9 78 48.7
CDE04G1997 Ceratophyllum demersum HOM05D000230 ORTHO05D011561 3.9e-07 58.2 73 49.3
Gohir.D08G023033 Gossypium hirsutum HOM05D000230 ORTHO05D011561 5.0e-07 57.8 73 52.1
Zm00001eb001430 Zea mays HOM05D000230 ORTHO05D000176 5.0e-07 57.8 74 44.6
Gohir.A08G012501 Gossypium hirsutum HOM05D000230 ORTHO05D011561 8.6e-07 57.0 78 51.3
Peaxi162Scf00192g00216 Petunia axillaris HOM05D000230 ORTHO05D000176 8.6e-07 57.0 78 47.4
Gorai.004G018200 Gossypium raimondii HOM05D000230 ORTHO05D000176 1.1e-06 56.6 78 51.3
Potri.001G011900 Populus trichocarpa HOM05D000230 ORTHO05D000176 1.1e-06 56.6 78 48.7
Zm00001eb026200 Zea mays HOM05D000230 ORTHO05D000176 1.1e-06 56.6 71 50.7
CAN.G1236.7 Capsicum annuum HOM05D000230 ORTHO05D000176 1.5e-06 56.2 78 46.2
DCAR_024377 Daucus carota HOM05D000230 ORTHO05D000176 1.5e-06 56.2 71 46.5
Aa31LG5G17720 Aethionema arabicum HOM05D000230 ORTHO05D000176 3.3e-06 55.1 74 47.3
MD09G1227900 Malus domestica HOM05D000230 ORTHO05D011561 3.3e-06 55.1 74 41.9
Nitab4.5_0003436g0140 Nicotiana tabacum HOM05D000230 ORTHO05D000176 4.3e-06 54.7 78 44.9
Nitab4.5_0005041g0040 Nicotiana tabacum HOM05D000230 ORTHO05D000176 4.3e-06 54.7 78 44.9
AT3G07160 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 5.6e-06 54.3 74 45.9
Carub.0003s0668 Capsella rubella HOM05D000230 ORTHO05D000176 5.6e-06 54.3 74 45.9
AL3G18410 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 7.3e-06 53.9 74 45.9
Sopen01g002350 Solanum pennellii HOM05D000230 ORTHO05D000176 7.3e-06 53.9 78 46.2
Ah.04g161650 Amaranthus hybridus HOM05D000230 ORTHO05D000176 9.5e-06 53.5 74 47.3
Oeu058543.1 Olea europaea HOM05D000230 ORTHO05D000176 9.5e-06 53.5 78 48.7
Sp3g06100 Schrenkiella parvula HOM05D000230 ORTHO05D000176 9.5e-06 53.5 78 42.3


User provided reference genes

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