Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 1.6e-205 719.2 357 100.0
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 4.6e-152 541.6 372 76.9
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 1.3e-133 480.3 335 71.0
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 4.8e-133 478.4 328 72.9
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 1.3e-122 443.7 340 65.9
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 5.1e-119 431.8 326 67.5
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 8.2e-117 424.5 327 63.6
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 2.4e-116 422.9 324 65.7
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 2.0e-115 419.9 307 66.1
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 4.5e-115 418.7 295 67.1
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 1.7e-114 416.8 329 64.4
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 1.7e-114 416.8 332 63.6
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 1.1e-113 414.1 325 63.4
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.5e-113 412.9 334 63.5
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 2.5e-113 412.9 327 63.0
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 3.2e-113 412.5 269 72.5
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 5.5e-113 411.8 330 63.0
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 5.5e-113 411.8 323 63.8
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 5.5e-113 411.8 292 69.5
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 9.4e-113 411.0 326 63.8
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 2.1e-112 409.8 330 63.3
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 7.9e-112 407.9 320 62.8
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 1.0e-111 407.5 320 62.5
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.0e-111 407.5 330 62.1
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 3.0e-111 406.0 335 61.8
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 3.9e-111 405.6 302 65.9
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 5.2e-111 405.2 291 68.0
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.2e-111 405.2 330 62.7
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 6.7e-111 404.8 286 66.1
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 3.3e-110 402.5 327 60.9
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 5.7e-110 401.7 290 66.6
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.3e-109 400.6 331 61.6
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 1.3e-109 400.6 302 64.9
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 2.2e-109 399.8 264 71.2
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 2.2e-109 399.8 274 69.3
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 3.7e-109 399.1 276 68.8
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 3.7e-109 399.1 311 62.4
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 8.2e-109 397.9 329 62.6
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 8.2e-109 397.9 288 66.3
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.1e-108 397.5 338 59.8
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 1.4e-108 397.1 331 60.7
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 1.8e-108 396.7 330 60.9
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 3.1e-108 396.0 316 60.8
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 5.3e-108 395.2 284 65.8
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 7.0e-108 394.8 284 64.8
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 9.1e-108 394.4 276 68.5
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.6e-107 393.7 323 62.5
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 1.6e-107 393.7 265 67.5
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 2.0e-107 393.3 327 59.3
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 2.0e-107 393.3 327 59.3
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 3.5e-107 392.5 331 61.0
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 3.5e-107 392.5 330 60.6
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 4.5e-107 392.1 338 60.4
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 5.9e-107 391.7 288 63.5
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 1.3e-106 390.6 335 60.6
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 1.7e-106 390.2 327 58.7
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 2.2e-106 389.8 296 64.5
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 3.8e-106 389.0 288 63.5
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 3.8e-106 389.0 269 68.8
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 5.0e-106 388.7 337 60.8
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 1.5e-105 387.1 291 64.6
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 1.9e-105 386.7 283 64.0
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 2.5e-105 386.3 286 62.9
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 3.2e-105 386.0 326 59.5
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 3.2e-105 386.0 287 63.1
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 4.2e-105 385.6 327 60.6
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 9.4e-105 384.4 288 62.2
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 9.4e-105 384.4 287 62.4
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 3.6e-104 382.5 286 64.3
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 6.1e-104 381.7 276 64.5
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 8.0e-104 381.3 327 57.2
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 1.0e-103 380.9 327 57.2
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 2.3e-103 379.8 325 60.3
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 3.0e-103 379.4 290 63.8
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 8.8e-103 377.9 334 57.2
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 2.6e-102 376.3 294 61.2
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 2.2e-101 373.2 334 56.3
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 2.8e-101 372.9 287 62.0
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.8e-101 372.9 287 61.7
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 4.8e-101 372.1 288 60.8
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 4.8e-101 372.1 323 60.1
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 6.3e-101 371.7 259 68.7
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 8.2e-101 371.3 287 61.7
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 8.2e-101 371.3 287 61.7
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.1e-100 370.9 337 58.2
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.4e-100 370.5 299 58.9
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 2.4e-100 369.8 337 56.4
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 5.3e-100 368.6 263 63.1
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 5.9e-99 365.2 329 58.4
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 7.7e-99 364.8 304 60.2
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 9.4e-97 357.8 225 73.3
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 1.6e-96 357.1 220 76.4
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 2.3e-95 353.2 230 69.1
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 3.7e-93 345.9 271 62.0
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 2.4e-92 343.2 233 68.2
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 1.3e-90 337.4 234 67.1
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 1.3e-90 337.4 221 70.1
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 3.2e-89 332.8 235 68.1
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 3.2e-89 332.8 220 71.4
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 6.1e-88 328.6 330 51.8
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 5.2e-87 325.5 334 52.1
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 7.5e-86 321.6 230 67.4
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 3.5e-83 312.8 328 51.5
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.0e-82 311.2 221 69.2
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 1.9e-81 307.0 270 57.4
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 6.8e-79 298.5 234 62.4
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 2.1e-72 276.9 377 42.2
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 3.5e-67 259.6 301 48.2
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 3.9e-66 256.1 174 67.2
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 2.6e-62 243.4 276 46.4
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.9e-61 240.0 300 44.3
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 1.2e-59 234.6 202 56.4
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 2.5e-57 226.9 309 41.1
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 3.3e-57 226.5 153 69.9
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 2.8e-56 223.4 270 43.7
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.1e-55 221.5 295 42.0
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 2.4e-52 210.3 237 44.3
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 7.1e-52 208.8 267 41.9
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 1.5e-49 201.1 149 61.7
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 9.6e-49 198.4 332 37.0
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.1e-47 194.9 132 66.7
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 3.2e-44 183.3 313 35.1
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 1.8e-39 167.5 243 40.3
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 5.3e-39 166.0 161 52.8
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.3e-39 166.0 167 58.7
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.3e-37 161.4 121 64.5
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 1.9e-36 157.5 413 28.6
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 4.2e-36 156.4 226 37.2
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 4.2e-36 156.4 87 80.5
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 1.3e-34 151.4 118 63.6
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 3.9e-34 149.8 145 54.5
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 4.8e-32 142.9 308 29.9
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 1.8e-18 97.8 348 25.6
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 1.3e-16 91.7 199 31.7
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 3.8e-13 80.1 223 25.1
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 8.8e-10 68.9 72 52.8


User provided reference genes

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