Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 5.6e-53 210.7 108 100.0
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 3.9e-30 134.8 90 72.2
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 6.7e-30 134.0 90 73.3
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 1.5e-29 132.9 90 74.4
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.5e-29 132.9 90 73.3
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 1.9e-29 132.5 83 77.1
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.5e-29 132.1 90 71.1
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 2.5e-29 132.1 83 78.3
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 2.5e-29 132.1 95 72.6
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 2.5e-29 132.1 83 78.3
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 2.5e-29 132.1 83 78.3
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 2.5e-29 132.1 83 78.3
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.3e-29 131.7 90 71.1
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.3e-29 131.7 83 78.3
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 4.3e-29 131.3 83 79.5
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 9.7e-29 130.2 85 74.1
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.3e-28 129.8 83 75.9
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.7e-28 129.4 89 73.0
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.7e-28 129.4 89 73.0
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.7e-28 129.4 89 71.9
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 1.7e-28 129.4 89 74.2
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.2e-28 129.0 89 73.0
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 2.2e-28 129.0 82 75.6
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 3.7e-28 128.3 90 67.8
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 3.7e-28 128.3 85 74.1
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 4.8e-28 127.9 83 77.1
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.8e-28 127.9 90 71.1
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 6.3e-28 127.5 90 66.7
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 6.3e-28 127.5 90 70.0
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.1e-27 126.7 89 71.9
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.4e-27 126.3 88 69.3
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.8e-27 125.9 87 69.0
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 1.8e-27 125.9 89 70.8
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.8e-27 125.9 83 75.9
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 2.4e-27 125.6 85 70.6
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 3.1e-27 125.2 83 74.7
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 4.1e-27 124.8 82 72.0
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 4.1e-27 124.8 89 71.9
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 5.3e-27 124.4 85 72.9
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 5.3e-27 124.4 83 69.9
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 5.3e-27 124.4 89 70.8
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 6.9e-27 124.0 84 67.9
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 9.1e-27 123.6 86 70.9
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 9.1e-27 123.6 89 67.4
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 9.1e-27 123.6 83 72.3
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.5e-26 122.9 88 68.2
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 2.0e-26 122.5 83 73.5
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.0e-26 122.5 88 68.2
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 2.0e-26 122.5 90 66.7
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 2.6e-26 122.1 82 72.0
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 2.6e-26 122.1 90 66.7
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 3.4e-26 121.7 85 74.1
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 7.7e-26 120.6 83 68.7
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.0e-25 120.2 81 74.1
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 1.0e-25 120.2 83 72.3
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 1.3e-25 119.8 82 68.3
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.3e-25 119.8 83 71.1
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 1.3e-25 119.8 83 72.3
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 2.2e-25 119.0 86 67.4
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.2e-25 119.0 83 68.7
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 2.2e-25 119.0 83 67.5
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.9e-25 118.6 82 69.5
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 3.8e-25 118.2 76 78.9
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.8e-25 118.2 83 68.7
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 3.8e-25 118.2 80 72.5
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.8e-25 118.2 83 71.1
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.8e-25 118.2 83 71.1
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 8.5e-25 117.1 89 68.5
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 8.5e-25 117.1 83 67.5
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 8.5e-25 117.1 77 76.6
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.9e-24 115.9 82 68.3
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.9e-24 115.9 82 68.3
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 1.9e-24 115.9 90 62.2
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 1.9e-24 115.9 83 69.9
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 2.5e-24 115.5 89 61.8
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 2.5e-24 115.5 90 63.3
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 4.2e-24 114.8 85 67.1
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 9.4e-24 113.6 83 66.3
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 1.2e-23 113.2 69 79.7
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.2e-23 113.2 80 65.0
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 2.1e-23 112.5 81 69.1
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.1e-23 112.5 90 60.0
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 2.1e-23 112.5 76 76.3
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 2.1e-23 112.5 83 68.7
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.7e-23 112.1 68 80.9
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 4.7e-23 111.3 89 64.0
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 4.7e-23 111.3 83 66.3
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 1.0e-22 110.2 89 60.7
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.4e-22 109.8 90 61.1
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 2.3e-22 109.0 76 69.7
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 3.9e-22 108.2 83 63.9
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 2.0e-21 105.9 89 59.6
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 1.3e-20 103.2 83 61.4
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 1.3e-20 103.2 83 61.4
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 1.1e-19 100.1 80 63.8
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 2.4e-19 99.0 86 52.3
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 3.1e-19 98.6 81 60.5
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 3.1e-19 98.6 80 60.0
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.1e-19 98.2 69 71.0
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 4.1e-19 98.2 66 68.2
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.6e-18 95.5 81 55.6
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.6e-18 95.5 81 55.6
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 5.9e-18 94.4 88 50.0
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 7.7e-18 94.0 81 56.8
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 7.7e-18 94.0 80 57.5
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 7.7e-18 94.0 90 51.1
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.3e-17 93.2 80 57.5
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 2.2e-17 92.4 81 56.8
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 2.9e-17 92.0 81 54.3
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 3.8e-17 91.7 81 54.3
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 3.8e-17 91.7 81 55.6
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 6.5e-17 90.9 81 54.3
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 6.5e-17 90.9 81 54.3
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-16 90.1 81 54.3
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 1.1e-16 90.1 81 54.3
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.1e-16 90.1 87 49.4
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.9e-16 89.4 81 53.1
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.9e-16 89.4 81 53.1
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 2.5e-16 89.0 81 53.1
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 2.5e-16 89.0 81 53.1
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 3.2e-16 88.6 81 53.1
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 4.2e-16 88.2 81 53.1
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 4.2e-16 88.2 92 52.2
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 5.5e-16 87.8 79 57.0
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 5.5e-16 87.8 81 51.9
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 7.2e-16 87.4 81 50.6
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 7.2e-16 87.4 81 50.6
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 1.2e-15 86.7 59 72.9
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-15 86.3 81 50.6
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 2.1e-15 85.9 81 51.9
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 2.1e-15 85.9 81 51.9
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 2.1e-15 85.9 81 51.9
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 2.7e-15 85.5 83 53.0
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 3.6e-15 85.1 81 50.6
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 4.7e-15 84.7 73 54.8
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 8.8e-14 80.5 53 69.8
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 3.3e-13 78.6 72 52.8
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 3.3e-13 78.6 72 52.8
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 4.4e-13 78.2 72 52.8
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 9.7e-13 77.0 72 51.4
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 9.7e-13 77.0 80 52.5
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 5.3e-11 71.2 80 42.5
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.2e-10 70.1 64 54.7
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.2e-10 70.1 79 49.4
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 1.2e-10 70.1 55 65.5
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 4.5e-10 68.2 85 43.5
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 5.0e-09 64.7 72 48.6
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 8.5e-09 63.9 81 46.9
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 1.6e-07 59.7 34 85.3
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 2.1e-07 59.3 80 38.8


User provided reference genes

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