Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 3.0e-177 625.2 337 100.0
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.3e-135 486.9 370 76.5
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 2.4e-102 376.3 345 64.3
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.3e-100 369.8 350 64.6
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.0e-96 356.7 341 62.8
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.1e-94 348.2 342 59.6
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 4.6e-93 345.5 344 60.8
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.0e-92 344.4 340 62.4
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 4.7e-90 335.5 340 59.1
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.8e-89 333.6 345 58.6
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.3e-89 333.2 349 60.2
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 2.3e-89 333.2 345 59.7
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.6e-88 329.7 345 59.4
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.4e-88 328.9 346 57.8
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 7.6e-88 328.2 348 58.6
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 2.9e-87 326.2 324 61.4
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.9e-87 326.2 341 56.9
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 4.9e-87 325.5 307 60.6
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.9e-86 323.6 335 57.9
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 2.4e-86 323.2 335 57.3
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 3.2e-86 322.8 329 58.1
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.6e-85 320.5 375 54.7
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.1e-85 320.1 341 56.3
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 8.6e-84 314.7 340 58.5
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.3e-83 312.8 344 57.0
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 6.2e-82 308.5 343 57.4
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 8.1e-82 308.1 341 57.5
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 8.1e-82 308.1 342 57.0
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 8.1e-82 308.1 309 58.3
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.8e-81 307.0 335 55.5
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.4e-81 306.6 342 56.7
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 4.0e-81 305.8 345 55.7
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 5.2e-81 305.4 346 54.9
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.5e-80 303.9 355 54.9
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.5e-80 303.9 310 57.7
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 2.0e-80 303.5 342 56.7
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 2.6e-80 303.1 351 55.0
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 5.8e-80 302.0 344 54.9
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 9.9e-80 301.2 338 56.8
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.7e-79 300.4 346 55.2
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 6.4e-79 298.5 340 55.3
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.9e-78 297.0 349 54.7
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 4.2e-78 295.8 328 55.8
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.6e-77 293.9 350 52.6
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.6e-77 293.9 344 54.1
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.1e-77 293.5 344 54.4
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.7e-77 293.1 330 56.7
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 3.5e-77 292.7 339 55.8
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 4.6e-77 292.4 346 55.8
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 4.6e-77 292.4 329 56.5
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 3.0e-76 289.7 341 54.3
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.5e-75 287.3 336 53.9
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 9.6e-75 284.6 343 52.5
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 9.6e-75 284.6 336 54.5
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 2.8e-74 283.1 333 54.1
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 2.4e-73 280.0 345 52.5
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 9.0e-73 278.1 344 53.5
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.0e-72 276.9 341 53.7
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 3.4e-72 276.2 302 56.0
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 5.8e-72 275.4 349 51.3
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 9.9e-72 274.6 341 52.5
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.3e-71 274.2 340 53.8
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 2.9e-71 273.1 315 54.9
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 2.9e-71 273.1 338 51.8
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 6.4e-71 271.9 351 51.6
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 6.4e-71 271.9 508 41.9
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 4.2e-70 269.2 409 45.7
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 9.3e-70 268.1 343 52.5
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.3e-68 264.2 333 49.5
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.7e-68 263.8 344 53.5
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 1.7e-68 263.8 333 50.5
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 8.7e-68 261.5 315 52.1
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.9e-67 260.4 325 53.2
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 4.3e-67 259.2 347 49.3
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 3.6e-66 256.1 347 51.6
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 8.1e-66 255.0 260 59.2
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.4e-65 254.2 356 48.6
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 1.4e-65 254.2 332 49.7
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.0e-64 250.4 311 51.4
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.0e-64 250.4 342 49.1
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 9.9e-64 248.1 350 50.9
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.7e-63 247.3 336 49.4
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 7.1e-62 241.9 307 50.8
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 7.1e-62 241.9 335 48.4
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.2e-61 241.1 336 47.3
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 3.5e-61 239.6 341 47.8
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 7.9e-61 238.4 341 47.2
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 7.9e-61 238.4 352 47.4
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.3e-60 237.7 284 53.9
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.8e-60 237.3 260 57.7
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 5.1e-60 235.7 300 48.3
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 8.7e-60 235.0 310 50.6
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 3.7e-58 229.6 345 46.4
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 6.2e-58 228.8 330 47.3
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.8e-57 227.3 332 45.2
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.8e-57 227.3 299 49.2
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 3.1e-57 226.5 352 45.7
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 5.3e-57 225.7 252 56.0
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 5.3e-57 225.7 315 48.3
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 6.9e-57 225.3 338 45.0
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 9.0e-57 224.9 300 47.0
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 9.0e-57 224.9 300 47.0
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.5e-56 224.2 352 46.0
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.7e-55 220.7 241 57.3
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.2e-55 220.3 329 45.6
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.2e-55 220.3 254 55.1
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.4e-54 217.6 336 46.4
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.6e-53 214.2 331 46.2
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.0e-53 212.2 338 43.5
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.3e-52 211.1 354 44.1
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 2.1e-50 203.8 300 44.3
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.1e-50 203.8 277 48.7
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 8.2e-50 201.8 300 44.3
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 4.2e-46 189.5 342 40.6
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.8e-44 184.1 340 40.9
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.5e-43 181.0 330 40.3
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.9e-43 180.6 342 40.4
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.9e-43 180.6 304 42.4
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.9e-43 180.6 313 39.6
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.1e-41 174.9 329 39.5
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.8e-41 174.1 298 39.9
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 2.4e-41 173.7 338 39.3
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 9.4e-38 161.8 306 38.6
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.3e-34 151.4 152 62.5
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 4.1e-33 146.4 240 43.3
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.0e-32 144.1 333 36.6
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.4e-32 143.3 120 71.7
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 1.0e-31 141.7 333 36.6
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 7.2e-30 135.6 190 46.8
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 5.7e-27 125.9 292 32.9
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.3e-23 114.8 130 60.8
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.3e-23 114.8 267 35.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.6e-21 107.8 296 33.4
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 3.6e-21 106.7 372 28.5
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 9.7e-19 98.6 90 61.1
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 2.4e-17 94.0 194 37.1
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 4.1e-17 93.2 108 52.8
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 1.2e-16 91.7 86 60.5
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.7e-16 90.5 91 60.4
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 6.5e-15 85.9 88 52.3
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.5e-14 84.0 98 50.0
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 3.2e-14 83.6 78 59.0
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 1.4e-09 68.2 110 40.0
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 5.4e-09 66.2 80 51.2
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 2.0e-08 64.3 311 22.8
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 6.5e-07 59.3 50 60.0
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 8.5e-07 58.9 96 43.8
Pp3c1_41070 Physcomitrium patens HOM05D025852 ORTHO05D031190 1.5e-06 58.2 175 29.7


User provided reference genes

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